Wall clock time and date at job start Tue Mar 31 2020 15:06:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47173 * 2 1
4 4 C 1.53002 * 109.46942 * 239.99727 * 2 1 3
5 5 O 1.45200 * 109.47095 * 120.00183 * 2 1 3
6 6 C 1.34631 * 117.00099 * 59.99911 * 5 2 1
7 7 O 1.21511 * 120.00404 * 359.97438 * 6 5 2
8 8 N 1.34777 * 120.00139 * 179.97438 * 6 5 2
9 9 C 1.46967 * 120.60517 * 0.02562 * 8 6 5
10 10 C 1.53369 * 108.68552 * 124.72671 * 9 8 6
11 11 N 1.46988 * 108.62220 * 49.45565 * 10 9 8
12 12 C 1.36943 * 120.60544 * 124.97034 * 11 10 9
13 13 H 1.07994 * 120.00425 * 213.84178 * 12 11 10
14 14 C 1.38811 * 119.99429 * 33.84078 * 12 11 10
15 15 N 1.31625 * 120.00094 * 212.78364 * 14 12 11
16 16 Si 1.86805 * 120.00170 * 32.78719 * 14 12 11
17 17 H 1.48497 * 109.47217 * 88.83070 * 16 14 12
18 18 H 1.48498 * 109.46817 * 208.83087 * 16 14 12
19 19 H 1.48501 * 109.47092 * 328.82597 * 16 14 12
20 20 C 1.46834 * 118.79917 * 304.94753 * 11 10 9
21 21 C 1.52867 * 109.51105 * 295.26386 * 20 11 10
22 22 C 1.53019 * 109.48130 * 299.50482 * 21 20 11
23 23 C 1.52998 * 109.44719 * 300.15319 * 22 21 20
24 24 C 1.53000 * 109.49486 * 60.06666 * 23 22 21
25 25 C 1.52850 * 109.55180 * 174.87615 * 20 11 10
26 26 C 1.46999 * 120.61122 * 179.97438 * 8 6 5
27 27 H 1.09000 * 109.46983 * 300.00170 * 1 2 3
28 28 H 1.08997 * 109.47292 * 59.99767 * 1 2 3
29 29 H 1.09002 * 109.47650 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.46946 * 180.02562 * 3 2 1
31 31 H 1.09005 * 109.47111 * 299.99965 * 3 2 1
32 32 H 1.08998 * 109.46863 * 59.99737 * 3 2 1
33 33 H 1.08994 * 109.47170 * 300.00230 * 4 2 1
34 34 H 1.09005 * 109.47023 * 60.00230 * 4 2 1
35 35 H 1.09003 * 109.47199 * 179.97438 * 4 2 1
36 36 H 1.08998 * 109.60343 * 244.48440 * 9 8 6
37 37 H 1.09001 * 109.60478 * 4.96694 * 9 8 6
38 38 H 1.09003 * 109.60872 * 169.19718 * 10 9 8
39 39 H 1.08992 * 109.60955 * 289.71512 * 10 9 8
40 40 H 0.96999 * 120.00140 * 179.97438 * 15 14 12
41 41 H 1.09000 * 109.47036 * 179.49848 * 21 20 11
42 42 H 1.08998 * 109.46855 * 59.50758 * 21 20 11
43 43 H 1.09000 * 109.47420 * 180.16277 * 22 21 20
44 44 H 1.08996 * 109.47817 * 60.14676 * 22 21 20
45 45 H 1.08994 * 109.46900 * 180.02562 * 23 22 21
46 46 H 1.09001 * 109.46955 * 300.06105 * 23 22 21
47 47 H 1.09005 * 109.47283 * 59.94849 * 24 23 22
48 48 H 1.09004 * 109.47143 * 179.97438 * 24 23 22
49 49 H 1.09004 * 109.46589 * 180.49990 * 25 20 11
50 50 H 1.08994 * 109.46990 * 300.49292 * 25 20 11
51 51 H 1.09000 * 109.61294 * 115.35489 * 26 8 6
52 52 H 1.09005 * 109.75247 * 354.92005 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2492
5 8 2.0140 -0.6845 1.1855
6 6 1.6522 -1.9723 1.3383
7 8 0.9508 -2.5095 0.5040
8 7 2.0680 -2.6657 2.4166
9 6 2.9162 -2.0292 3.4341
10 6 2.2390 -2.1789 4.8020
11 7 1.8520 -3.5854 4.9827
12 6 2.2712 -4.2883 6.0807
13 1 2.4844 -5.3437 5.9973
14 6 2.4222 -3.6440 7.3010
15 7 3.3590 -4.0336 8.1394
16 14 1.2956 -2.2242 7.7533
17 1 0.0853 -2.7501 8.4341
18 1 2.0116 -1.2952 8.6641
19 1 0.8947 -1.4986 6.5212
20 6 1.0074 -4.2231 3.9649
21 6 -0.3617 -3.5436 3.9388
22 6 -1.0309 -3.6914 5.3069
23 6 -1.2010 -5.1766 5.6330
24 6 0.1708 -5.8533 5.6620
25 6 0.8411 -5.7064 4.2943
26 6 1.6806 -4.0722 2.5971
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.6766 -1.7489 -1.2492
34 1 1.6766 -0.2075 -2.1393
35 1 3.1300 -0.7210 -1.2495
36 1 3.8914 -2.5157 3.4537
37 1 3.0372 -0.9716 3.1998
38 1 2.9348 -1.8869 5.5886
39 1 1.3516 -1.5473 4.8419
40 1 3.4648 -3.5832 8.9920
41 1 -0.9851 -4.0116 3.1769
42 1 -0.2379 -2.4857 3.7073
43 1 -2.0084 -3.2094 5.2873
44 1 -0.4090 -3.2211 6.0685
45 1 -1.6781 -5.2823 6.6072
46 1 -1.8221 -5.6471 4.8707
47 1 0.7923 -5.3824 6.4237
48 1 0.0492 -6.9113 5.8948
49 1 0.2212 -6.1802 3.5330
50 1 1.8197 -6.1857 4.3159
51 1 2.5675 -4.7044 2.5544
52 1 0.9837 -4.3660 1.8121
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000746481353.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:06:11
Heat of formation + Delta-G solvation = -47.850711 kcal
Electronic energy + Delta-G solvation = -31365.060595 eV
Core-core repulsion = 27558.705566 eV
Total energy + Delta-G solvation = -3806.355029 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-40.69768 -39.39217 -37.05232 -35.55186 -33.99585 -33.56407 -31.56652 -31.08451
-30.10405 -27.62034 -27.43376 -27.38963 -25.74686 -23.61347 -22.65589 -22.03013
-21.56924 -20.05141 -19.02302 -18.26705 -17.65275 -16.52475 -16.44845 -15.92216
-15.34312 -15.03483 -14.57699 -14.43476 -14.20638 -13.99120 -13.78913 -13.44802
-13.34130 -13.00120 -12.66302 -12.55954 -12.47317 -12.25677 -12.15752 -11.99033
-11.90576 -11.65774 -11.49550 -11.44639 -11.36561 -11.23663 -11.00084 -10.84798
-10.84189 -10.49204 -10.27535 -10.21147 -10.00370 -9.78266 -9.73135 -9.58669
-9.28506 -9.24974 -8.52396 -8.21477 -6.81052 -6.11762 -3.36530 2.42498
3.14592 3.33150 3.45146 3.50179 4.09930 4.48378 4.70331 4.74083
4.78946 4.88427 5.10335 5.35980 5.39475 5.42283 5.47497 5.48400
5.54228 5.62563 5.68624 5.73399 5.79844 5.82576 5.83268 5.91944
5.99387 6.03086 6.09312 6.14211 6.14997 6.26922 6.28857 6.31161
6.33693 6.35966 6.43224 6.49790 6.52693 6.64080 6.66881 6.75698
6.86081 6.96177 7.02442 7.06065 7.12724 7.65900 7.77607 7.91868
8.28046 8.65024 8.88986 9.62263 10.07301 11.01822
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.016328 B = 0.004824 C = 0.004370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1714.476164 B = 5803.142947 C = 6405.564391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.135 3.865
3 C -0.140 4.140
4 C -0.181 4.181
5 O -0.364 6.364
6 C 0.650 3.350
7 O -0.582 6.582
8 N -0.579 5.579
9 C 0.092 3.908
10 C 0.130 3.870
11 N -0.586 5.586
12 C -0.257 4.257
13 H 0.090 0.910
14 C 0.042 3.958
15 N -0.882 5.882
16 Si 0.832 3.168
17 H -0.288 1.288
18 H -0.300 1.300
19 H -0.252 1.252
20 C 0.185 3.815
21 C -0.118 4.118
22 C -0.114 4.114
23 C -0.107 4.107
24 C -0.150 4.150
25 C -0.091 4.091
26 C 0.124 3.876
27 H 0.058 0.942
28 H 0.065 0.935
29 H 0.088 0.912
30 H 0.065 0.935
31 H 0.077 0.923
32 H 0.066 0.934
33 H 0.088 0.912
34 H 0.066 0.934
35 H 0.057 0.943
36 H 0.071 0.929
37 H 0.080 0.920
38 H 0.078 0.922
39 H 0.034 0.966
40 H 0.264 0.736
41 H 0.049 0.951
42 H 0.048 0.952
43 H 0.039 0.961
44 H 0.073 0.927
45 H 0.047 0.953
46 H 0.042 0.958
47 H 0.134 0.866
48 H 0.039 0.961
49 H 0.046 0.954
50 H 0.064 0.936
51 H 0.069 0.931
52 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.722 5.979 -13.323 15.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.098 3.902
3 C -0.197 4.197
4 C -0.239 4.239
5 O -0.279 6.279
6 C 0.404 3.596
7 O -0.473 6.473
8 N -0.318 5.318
9 C -0.032 4.032
10 C 0.004 3.996
11 N -0.309 5.309
12 C -0.384 4.384
13 H 0.108 0.892
14 C -0.160 4.160
15 N -0.522 5.522
16 Si 0.660 3.340
17 H -0.215 1.215
18 H -0.228 1.228
19 H -0.177 1.177
20 C 0.096 3.904
21 C -0.157 4.157
22 C -0.151 4.151
23 C -0.145 4.145
24 C -0.186 4.186
25 C -0.129 4.129
26 C 0.001 3.999
27 H 0.077 0.923
28 H 0.084 0.916
29 H 0.107 0.893
30 H 0.084 0.916
31 H 0.095 0.905
32 H 0.085 0.915
33 H 0.107 0.893
34 H 0.084 0.916
35 H 0.076 0.924
36 H 0.089 0.911
37 H 0.098 0.902
38 H 0.096 0.904
39 H 0.052 0.948
40 H 0.073 0.927
41 H 0.068 0.932
42 H 0.067 0.933
43 H 0.058 0.942
44 H 0.091 0.909
45 H 0.066 0.934
46 H 0.061 0.939
47 H 0.151 0.849
48 H 0.057 0.943
49 H 0.065 0.935
50 H 0.083 0.917
51 H 0.088 0.912
52 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -3.817 5.872 -13.436 15.151
hybrid contribution -0.778 0.967 0.427 1.313
sum -4.595 6.839 -13.009 15.399
Atomic orbital electron populations
1.22500 0.94245 1.05107 1.02071 1.21970 0.94242 0.91435 0.82517
1.21842 1.02155 0.92843 1.02862 1.22499 1.01386 1.03598 0.96373
1.86302 1.71608 1.24117 1.45829 1.17992 0.78980 0.80305 0.82286
1.90828 1.42212 1.70485 1.43747 1.46901 1.52074 1.12337 1.20497
1.22452 0.93998 0.97318 0.89443 1.21771 0.97228 0.86923 0.93704
1.44310 1.55408 1.08456 1.22750 1.18593 1.38380 0.95887 0.85565
0.89239 1.25376 0.97493 0.97016 0.96136 1.70016 1.28740 1.42738
1.10659 0.87721 0.83196 0.83851 0.79261 1.21519 1.22754 1.17721
1.20200 0.89025 0.93374 0.87810 1.21836 0.97142 1.00131 0.96621
1.21469 0.98685 0.96726 0.98213 1.21403 0.97876 0.95719 0.99494
1.22310 0.96776 0.98995 1.00534 1.21311 1.00302 0.93950 0.97322
1.22214 1.00060 0.78546 0.99084 0.92320 0.91560 0.89277 0.91567
0.90466 0.91531 0.89307 0.91551 0.92364 0.91080 0.90208 0.90386
0.94799 0.92662 0.93210 0.93314 0.94232 0.90857 0.93398 0.93926
0.84857 0.94271 0.93496 0.91699 0.91249 0.89517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16
2 C 0.14 1.69 1.13 -90.62 -0.10 1.59 16
3 C -0.14 -1.33 8.85 37.16 0.33 -1.00 16
4 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16
5 O -0.36 -5.66 8.52 -40.30 -0.34 -6.01 16
6 C 0.65 11.23 7.74 54.06 0.42 11.65 16
7 O -0.58 -10.66 11.29 -19.28 -0.22 -10.88 16
8 N -0.58 -10.10 2.60 -178.36 -0.46 -10.56 16
9 C 0.09 1.58 6.60 -3.60 -0.02 1.56 16
10 C 0.13 2.60 4.11 -3.59 -0.01 2.59 16
11 N -0.59 -12.28 1.59 -157.60 -0.25 -12.53 16
12 C -0.26 -6.19 6.16 -15.06 -0.09 -6.28 16
13 H 0.09 2.31 5.90 -52.49 -0.31 2.00 16
14 C 0.04 1.07 4.79 -17.43 -0.08 0.99 16
15 N -0.88 -24.68 13.97 55.49 0.78 -23.90 16
16 Si 0.83 19.92 23.83 -169.99 -4.05 15.87 16
17 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
18 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16
19 H -0.25 -5.73 4.64 56.52 0.26 -5.47 16
20 C 0.18 3.42 0.66 -131.68 -0.09 3.33 16
21 C -0.12 -2.17 4.52 -26.79 -0.12 -2.29 16
22 C -0.11 -2.15 5.77 -26.72 -0.15 -2.30 16
23 C -0.11 -1.90 5.92 -26.73 -0.16 -2.06 16
24 C -0.15 -2.82 5.30 -26.72 -0.14 -2.96 16
25 C -0.09 -1.61 4.21 -26.80 -0.11 -1.72 16
26 C 0.12 2.14 5.27 -3.67 -0.02 2.12 16
27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
29 H 0.09 1.32 5.88 -51.93 -0.31 1.02 16
30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
33 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16
34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16
37 H 0.08 1.26 6.91 -51.93 -0.36 0.90 16
38 H 0.08 1.66 6.15 -51.93 -0.32 1.34 16
39 H 0.03 0.71 5.83 -51.93 -0.30 0.41 16
40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16
42 H 0.05 0.95 7.00 -51.93 -0.36 0.59 16
43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
44 H 0.07 1.58 3.97 -51.93 -0.21 1.37 16
45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
47 H 0.13 3.00 4.21 -51.93 -0.22 2.78 16
48 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
49 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
50 H 0.06 1.19 7.32 -51.93 -0.38 0.81 16
51 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16
52 H 0.09 1.49 6.98 -51.93 -0.36 1.12 16
LS Contribution 364.90 15.07 5.50 5.50
Total: -1.00 -27.36 364.90 -7.84 -35.20
By element:
Atomic # 1 Polarization: 14.91 SS G_CDS: -9.05 Total: 5.86 kcal
Atomic # 6 Polarization: 1.20 SS G_CDS: 0.26 Total: 1.46 kcal
Atomic # 7 Polarization: -47.06 SS G_CDS: 0.06 Total: -46.99 kcal
Atomic # 8 Polarization: -16.33 SS G_CDS: -0.56 Total: -16.89 kcal
Atomic # 14 Polarization: 19.92 SS G_CDS: -4.05 Total: 15.87 kcal
Total LS contribution 5.50 Total: 5.50 kcal
Total: -27.36 -7.84 -35.20 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000746481353.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.654 kcal
(2) G-P(sol) polarization free energy of solvation -27.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds