Wall clock time and date at job start Tue Mar 31 2020 15:06:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53002 * 109.47173 * 2 1
4 4 C 1.53002 * 109.46942 * 239.99727 * 2 1 3
5 5 O 1.45200 * 109.47095 * 120.00183 * 2 1 3
6 6 C 1.34631 * 117.00099 * 59.99911 * 5 2 1
7 7 O 1.21511 * 120.00404 * 359.97438 * 6 5 2
8 8 N 1.34777 * 120.00139 * 179.97438 * 6 5 2
9 9 C 1.46967 * 120.60517 * 0.02562 * 8 6 5
10 10 C 1.53369 * 108.68552 * 124.72671 * 9 8 6
11 11 N 1.46988 * 108.62220 * 49.45565 * 10 9 8
12 12 C 1.36943 * 120.60544 * 124.97034 * 11 10 9
13 13 H 1.07994 * 120.00425 * 213.84178 * 12 11 10
14 14 C 1.38811 * 119.99429 * 33.84078 * 12 11 10
15 15 N 1.31625 * 120.00094 * 212.78364 * 14 12 11
16 16 Si 1.86805 * 120.00170 * 32.78719 * 14 12 11
17 17 H 1.48497 * 109.47217 * 88.83070 * 16 14 12
18 18 H 1.48498 * 109.46817 * 208.83087 * 16 14 12
19 19 H 1.48501 * 109.47092 * 328.82597 * 16 14 12
20 20 C 1.46834 * 118.79917 * 304.94753 * 11 10 9
21 21 C 1.52867 * 109.51105 * 295.26386 * 20 11 10
22 22 C 1.53019 * 109.48130 * 299.50482 * 21 20 11
23 23 C 1.52998 * 109.44719 * 300.15319 * 22 21 20
24 24 C 1.53000 * 109.49486 * 60.06666 * 23 22 21
25 25 C 1.52850 * 109.55180 * 174.87615 * 20 11 10
26 26 C 1.46999 * 120.61122 * 179.97438 * 8 6 5
27 27 H 1.09000 * 109.46983 * 300.00170 * 1 2 3
28 28 H 1.08997 * 109.47292 * 59.99767 * 1 2 3
29 29 H 1.09002 * 109.47650 * 180.02562 * 1 2 3
30 30 H 1.08996 * 109.46946 * 180.02562 * 3 2 1
31 31 H 1.09005 * 109.47111 * 299.99965 * 3 2 1
32 32 H 1.08998 * 109.46863 * 59.99737 * 3 2 1
33 33 H 1.08994 * 109.47170 * 300.00230 * 4 2 1
34 34 H 1.09005 * 109.47023 * 60.00230 * 4 2 1
35 35 H 1.09003 * 109.47199 * 179.97438 * 4 2 1
36 36 H 1.08998 * 109.60343 * 244.48440 * 9 8 6
37 37 H 1.09001 * 109.60478 * 4.96694 * 9 8 6
38 38 H 1.09003 * 109.60872 * 169.19718 * 10 9 8
39 39 H 1.08992 * 109.60955 * 289.71512 * 10 9 8
40 40 H 0.96999 * 120.00140 * 179.97438 * 15 14 12
41 41 H 1.09000 * 109.47036 * 179.49848 * 21 20 11
42 42 H 1.08998 * 109.46855 * 59.50758 * 21 20 11
43 43 H 1.09000 * 109.47420 * 180.16277 * 22 21 20
44 44 H 1.08996 * 109.47817 * 60.14676 * 22 21 20
45 45 H 1.08994 * 109.46900 * 180.02562 * 23 22 21
46 46 H 1.09001 * 109.46955 * 300.06105 * 23 22 21
47 47 H 1.09005 * 109.47283 * 59.94849 * 24 23 22
48 48 H 1.09004 * 109.47143 * 179.97438 * 24 23 22
49 49 H 1.09004 * 109.46589 * 180.49990 * 25 20 11
50 50 H 1.08994 * 109.46990 * 300.49292 * 25 20 11
51 51 H 1.09000 * 109.61294 * 115.35489 * 26 8 6
52 52 H 1.09005 * 109.75247 * 354.92005 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2492
5 8 2.0140 -0.6845 1.1855
6 6 1.6522 -1.9723 1.3383
7 8 0.9508 -2.5095 0.5040
8 7 2.0680 -2.6657 2.4166
9 6 2.9162 -2.0292 3.4341
10 6 2.2390 -2.1789 4.8020
11 7 1.8520 -3.5854 4.9827
12 6 2.2712 -4.2883 6.0807
13 1 2.4844 -5.3437 5.9973
14 6 2.4222 -3.6440 7.3010
15 7 3.3590 -4.0336 8.1394
16 14 1.2956 -2.2242 7.7533
17 1 0.0853 -2.7501 8.4341
18 1 2.0116 -1.2952 8.6641
19 1 0.8947 -1.4986 6.5212
20 6 1.0074 -4.2231 3.9649
21 6 -0.3617 -3.5436 3.9388
22 6 -1.0309 -3.6914 5.3069
23 6 -1.2010 -5.1766 5.6330
24 6 0.1708 -5.8533 5.6620
25 6 0.8411 -5.7064 4.2943
26 6 1.6806 -4.0722 2.5971
27 1 -0.3633 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 3.1300 1.4425 -0.0005
31 1 1.6767 1.9564 -0.8900
32 1 1.6766 1.9563 0.8900
33 1 1.6766 -1.7489 -1.2492
34 1 1.6766 -0.2075 -2.1393
35 1 3.1300 -0.7210 -1.2495
36 1 3.8914 -2.5157 3.4537
37 1 3.0372 -0.9716 3.1998
38 1 2.9348 -1.8869 5.5886
39 1 1.3516 -1.5473 4.8419
40 1 3.4648 -3.5832 8.9920
41 1 -0.9851 -4.0116 3.1769
42 1 -0.2379 -2.4857 3.7073
43 1 -2.0084 -3.2094 5.2873
44 1 -0.4090 -3.2211 6.0685
45 1 -1.6781 -5.2823 6.6072
46 1 -1.8221 -5.6471 4.8707
47 1 0.7923 -5.3824 6.4237
48 1 0.0492 -6.9113 5.8948
49 1 0.2212 -6.1802 3.5330
50 1 1.8197 -6.1857 4.3159
51 1 2.5675 -4.7044 2.5544
52 1 0.9837 -4.3660 1.8121
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000746481353.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:06:10
Heat of formation + Delta-G solvation = -62.052524 kcal
Electronic energy + Delta-G solvation = -31365.676432 eV
Core-core repulsion = 27558.705566 eV
Total energy + Delta-G solvation = -3806.970866 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.00429 -40.83169 -38.30598 -36.97751 -35.48702 -34.87826 -33.27622 -32.62127
-31.64368 -29.23648 -28.32225 -28.26031 -27.14913 -25.34963 -24.22319 -23.44342
-22.91837 -21.43673 -20.28011 -19.91837 -19.06701 -18.11945 -17.69637 -17.28589
-16.92588 -16.40737 -16.15624 -15.73978 -15.40955 -15.38580 -15.25534 -14.82903
-14.63300 -14.42253 -14.32286 -14.17501 -13.93477 -13.40368 -13.21097 -13.08770
-13.04759 -12.93757 -12.82181 -12.77233 -12.68938 -12.52881 -12.41280 -12.38571
-12.28921 -12.12883 -11.82903 -11.72352 -11.42463 -11.33759 -11.19101 -11.01862
-10.89196 -10.75705 -10.34733 -9.79273 -8.56893 -8.13119 -5.31739 1.19866
1.36732 1.48818 1.52285 1.82143 2.51079 2.84629 3.05237 3.30907
3.79911 3.84431 3.89118 3.93556 3.99163 4.05478 4.20853 4.31786
4.32085 4.48402 4.53550 4.56058 4.64722 4.65232 4.68651 4.70711
4.77995 4.79637 4.82591 4.84347 4.85721 4.91087 4.92617 4.95327
4.97439 5.07795 5.11793 5.14872 5.21851 5.32431 5.35272 5.43407
5.47917 5.50541 5.53528 5.57532 5.65622 5.97044 6.06097 6.30469
6.43370 7.03401 7.33855 7.71688 8.17732 9.04774
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.016328 B = 0.004824 C = 0.004370
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1714.476164 B = 5803.142947 C = 6405.564391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.122 3.878
3 C -0.135 4.135
4 C -0.176 4.176
5 O -0.370 6.370
6 C 0.650 3.350
7 O -0.592 6.592
8 N -0.585 5.585
9 C 0.105 3.895
10 C 0.130 3.870
11 N -0.593 5.593
12 C -0.213 4.213
13 H 0.071 0.929
14 C -0.004 4.004
15 N -0.931 5.931
16 Si 0.876 3.124
17 H -0.303 1.303
18 H -0.316 1.316
19 H -0.235 1.235
20 C 0.181 3.819
21 C -0.109 4.109
22 C -0.118 4.118
23 C -0.103 4.103
24 C -0.147 4.147
25 C -0.088 4.088
26 C 0.130 3.870
27 H 0.054 0.946
28 H 0.093 0.907
29 H 0.061 0.939
30 H 0.069 0.931
31 H 0.104 0.896
32 H 0.064 0.936
33 H 0.061 0.939
34 H 0.092 0.908
35 H 0.060 0.940
36 H 0.072 0.928
37 H 0.098 0.902
38 H 0.062 0.938
39 H 0.028 0.972
40 H 0.258 0.742
41 H 0.067 0.933
42 H 0.035 0.965
43 H 0.055 0.945
44 H 0.043 0.957
45 H 0.047 0.953
46 H 0.069 0.931
47 H 0.094 0.906
48 H 0.052 0.948
49 H 0.076 0.924
50 H 0.055 0.945
51 H 0.071 0.929
52 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.941 6.883 -16.232 18.310
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.086 3.914
3 C -0.192 4.192
4 C -0.233 4.233
5 O -0.285 6.285
6 C 0.406 3.594
7 O -0.484 6.484
8 N -0.324 5.324
9 C -0.019 4.019
10 C 0.004 3.996
11 N -0.316 5.316
12 C -0.342 4.342
13 H 0.088 0.912
14 C -0.201 4.201
15 N -0.576 5.576
16 Si 0.706 3.294
17 H -0.231 1.231
18 H -0.245 1.245
19 H -0.160 1.160
20 C 0.093 3.907
21 C -0.148 4.148
22 C -0.155 4.155
23 C -0.141 4.141
24 C -0.184 4.184
25 C -0.126 4.126
26 C 0.007 3.993
27 H 0.073 0.927
28 H 0.112 0.888
29 H 0.080 0.920
30 H 0.088 0.912
31 H 0.123 0.877
32 H 0.083 0.917
33 H 0.080 0.920
34 H 0.111 0.889
35 H 0.079 0.921
36 H 0.090 0.910
37 H 0.116 0.884
38 H 0.080 0.920
39 H 0.046 0.954
40 H 0.067 0.933
41 H 0.086 0.914
42 H 0.054 0.946
43 H 0.073 0.927
44 H 0.062 0.938
45 H 0.066 0.934
46 H 0.087 0.913
47 H 0.111 0.889
48 H 0.070 0.930
49 H 0.094 0.906
50 H 0.074 0.926
51 H 0.090 0.910
52 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -5.064 6.807 -16.399 18.464
hybrid contribution -0.464 0.656 1.185 1.432
sum -5.528 7.464 -15.214 17.825
Atomic orbital electron populations
1.22452 0.94168 1.03597 1.03266 1.22428 0.94529 0.92766 0.81706
1.21874 1.02398 0.90724 1.04171 1.22443 1.01487 1.02209 0.97200
1.86310 1.71647 1.23119 1.47432 1.18032 0.78631 0.80831 0.81921
1.90832 1.42595 1.70955 1.44049 1.46913 1.52288 1.12420 1.20746
1.22253 0.93470 0.98522 0.87672 1.21705 0.96810 0.86049 0.95051
1.44420 1.56181 1.08760 1.22246 1.18472 1.34789 0.94993 0.85976
0.91186 1.25666 0.98836 0.98933 0.96643 1.70089 1.31175 1.44983
1.11313 0.87012 0.81252 0.82014 0.79099 1.23134 1.24460 1.15964
1.20382 0.89019 0.93706 0.87576 1.21740 0.96931 0.99388 0.96768
1.21492 0.98975 0.97501 0.97527 1.21377 0.97385 0.94884 1.00449
1.22141 0.96969 0.99537 0.99797 1.21312 1.00332 0.93473 0.97506
1.22097 1.00188 0.78823 0.98159 0.92672 0.88846 0.92003 0.91236
0.87722 0.91656 0.91984 0.88908 0.92132 0.90953 0.88409 0.91991
0.95380 0.93319 0.91411 0.94574 0.92672 0.93821 0.93407 0.91278
0.88864 0.92970 0.90583 0.92641 0.91049 0.88818
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.95 8.37 71.98 0.60 -3.35 16
2 C 0.12 2.73 1.13 -10.79 -0.01 2.72 16
3 C -0.13 -2.12 8.85 71.98 0.64 -1.48 16
4 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16
5 O -0.37 -10.78 8.52 -55.40 -0.47 -11.25 16
6 C 0.65 21.33 7.74 129.79 1.00 22.34 16
7 O -0.59 -20.76 11.29 19.80 0.22 -20.54 16
8 N -0.58 -19.37 2.60 -948.61 -2.47 -21.84 16
9 C 0.10 3.46 6.60 86.41 0.57 4.04 16
10 C 0.13 5.12 4.11 86.41 0.35 5.47 16
11 N -0.59 -24.58 1.59 -652.52 -1.04 -25.62 16
12 C -0.21 -10.43 6.16 84.03 0.52 -9.91 16
13 H 0.07 3.71 5.90 -2.91 -0.02 3.69 16
14 C 0.00 -0.20 4.79 84.86 0.41 0.20 16
15 N -0.93 -54.24 13.97 21.65 0.30 -53.94 16
16 Si 0.88 42.56 23.83 68.60 1.63 44.19 16
17 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16
18 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16
19 H -0.24 -10.59 4.64 99.48 0.46 -10.13 16
20 C 0.18 6.41 0.66 3.51 0.00 6.41 16
21 C -0.11 -3.75 4.52 30.56 0.14 -3.62 16
22 C -0.12 -4.22 5.77 30.60 0.18 -4.04 16
23 C -0.10 -3.43 5.92 30.59 0.18 -3.25 16
24 C -0.15 -5.37 5.30 30.60 0.16 -5.21 16
25 C -0.09 -2.96 4.21 30.55 0.13 -2.83 16
26 C 0.13 4.25 5.27 86.35 0.45 4.71 16
27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
29 H 0.06 1.74 5.88 -2.39 -0.01 1.72 16
30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
31 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16
32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
33 H 0.06 1.67 5.88 -2.39 -0.01 1.65 16
34 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16
35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16
37 H 0.10 2.90 6.91 -2.39 -0.02 2.88 16
38 H 0.06 2.65 6.15 -2.39 -0.01 2.63 16
39 H 0.03 1.15 5.83 -2.39 -0.01 1.14 16
40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16
41 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
42 H 0.04 1.33 7.00 -2.39 -0.02 1.31 16
43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16
44 H 0.04 1.83 3.97 -2.39 -0.01 1.82 16
45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16
46 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16
47 H 0.09 4.23 4.21 -2.38 -0.01 4.22 16
48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
49 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16
50 H 0.05 1.97 7.32 -2.39 -0.02 1.95 16
51 H 0.07 2.31 8.11 -2.39 -0.02 2.29 16
52 H 0.09 2.97 6.98 -2.38 -0.02 2.96 16
Total: -1.00 -60.45 364.90 4.76 -55.69
By element:
Atomic # 1 Polarization: 23.57 SS G_CDS: 0.65 Total: 24.22 kcal
Atomic # 6 Polarization: 3.16 SS G_CDS: 5.93 Total: 9.09 kcal
Atomic # 7 Polarization: -98.19 SS G_CDS: -3.20 Total: -101.40 kcal
Atomic # 8 Polarization: -31.54 SS G_CDS: -0.25 Total: -31.79 kcal
Atomic # 14 Polarization: 42.56 SS G_CDS: 1.63 Total: 44.19 kcal
Total: -60.45 4.76 -55.69 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000746481353.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.367 kcal
(2) G-P(sol) polarization free energy of solvation -60.448 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.815 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.763 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.685 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.053 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds