Wall clock time and date at job start Tue Mar 31 2020 13:55:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53004 * 109.47090 * 2 1
4 4 C 1.53008 * 109.47074 * 119.99603 * 2 1 3
5 5 N 1.46498 * 109.46531 * 65.00832 * 4 2 1
6 6 C 1.46510 * 119.99707 * 269.99541 * 5 4 2
7 7 C 1.50700 * 109.47097 * 270.00394 * 6 5 4
8 8 H 1.08006 * 120.00021 * 0.02562 * 7 6 5
9 9 C 1.37878 * 120.00188 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99662 * 0.02562 * 9 7 6
11 11 Si 1.86799 * 119.99987 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.46669 * 90.00553 * 11 9 7
13 13 H 1.48497 * 109.46861 * 210.00139 * 11 9 7
14 14 H 1.48496 * 109.47502 * 330.00447 * 11 9 7
15 15 C 1.34777 * 120.00682 * 90.00141 * 5 4 2
16 16 O 1.21282 * 120.00345 * 179.97438 * 15 5 4
17 17 C 1.50699 * 119.99614 * 359.97438 * 15 5 4
18 18 N 1.46496 * 109.47317 * 180.02562 * 17 15 5
19 19 C 1.34777 * 120.00266 * 180.02562 * 18 17 15
20 20 O 1.21274 * 120.00135 * 0.27234 * 19 18 17
21 21 C 1.50706 * 119.99766 * 179.97438 * 19 18 17
22 22 C 1.52999 * 109.46573 * 179.97438 * 21 19 18
23 23 C 1.54266 * 110.03792 * 292.90549 * 22 21 19
24 24 C 1.54961 * 104.16181 * 217.14014 * 23 22 21
25 25 C 1.54885 * 102.77932 * 37.88909 * 24 23 22
26 26 C 1.53875 * 110.03091 * 175.69140 * 22 21 19
27 27 H 1.09004 * 109.46602 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47287 * 299.99860 * 1 2 3
29 29 H 1.08998 * 109.47139 * 60.00099 * 1 2 3
30 30 H 1.08994 * 109.47625 * 239.99813 * 2 1 3
31 31 H 1.09004 * 109.47232 * 179.97438 * 3 2 1
32 32 H 1.08998 * 109.47049 * 299.99956 * 3 2 1
33 33 H 1.09008 * 109.47103 * 59.99692 * 3 2 1
34 34 H 1.08994 * 109.47229 * 305.00281 * 4 2 1
35 35 H 1.08998 * 109.47072 * 185.00113 * 4 2 1
36 36 H 1.09001 * 109.46747 * 29.99957 * 6 5 4
37 37 H 1.08999 * 109.46747 * 150.00408 * 6 5 4
38 38 H 0.96998 * 119.99896 * 179.97438 * 10 9 7
39 39 H 1.09004 * 109.47103 * 60.00237 * 17 15 5
40 40 H 1.09000 * 109.47247 * 300.00115 * 17 15 5
41 41 H 0.96999 * 119.99691 * 359.97438 * 18 17 15
42 42 H 1.09000 * 109.47161 * 299.99737 * 21 19 18
43 43 H 1.09001 * 109.46740 * 59.99879 * 21 19 18
44 44 H 1.08999 * 110.01809 * 54.30201 * 22 21 19
45 45 H 1.09000 * 110.48113 * 335.78905 * 23 22 21
46 46 H 1.09008 * 110.48152 * 98.42758 * 23 22 21
47 47 H 1.08994 * 110.72031 * 279.57006 * 24 23 22
48 48 H 1.09004 * 110.91930 * 156.30021 * 24 23 22
49 49 H 1.08998 * 110.48384 * 203.40508 * 25 24 23
50 50 H 1.09003 * 110.59736 * 80.81343 * 25 24 23
51 51 H 1.09005 * 110.03670 * 238.57201 * 26 22 21
52 52 H 1.09003 * 110.03297 * 359.94934 * 26 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2494
5 7 1.6525 -2.1328 1.1905
6 6 0.3745 -2.5660 1.7612
7 6 0.5716 -2.9409 3.2075
8 1 1.5507 -2.8637 3.6568
9 6 -0.4983 -3.3813 3.9575
10 7 -1.6906 -3.4747 3.4105
11 14 -0.2539 -3.8466 5.7500
12 1 -0.4657 -2.6511 6.6050
13 1 -1.2288 -4.9022 6.1247
14 1 1.1271 -4.3564 5.9452
15 6 2.4716 -3.0330 0.6116
16 8 2.1510 -4.2017 0.5634
17 6 3.7859 -2.5874 0.0242
18 7 4.4854 -3.7438 -0.5409
19 6 5.6901 -3.5841 -1.1238
20 8 6.1973 -2.4837 -1.1760
21 6 6.4098 -4.7739 -1.7046
22 6 7.7441 -4.3214 -2.3011
23 6 7.4960 -3.4215 -3.5292
24 6 8.6249 -3.8090 -4.5175
25 6 8.7449 -5.3402 -4.3172
26 6 8.5382 -5.5407 -2.8016
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5138 -0.8899
31 1 3.1300 1.4426 0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6765 1.9564 0.8900
34 1 1.6053 -0.2617 2.1370
35 1 3.1263 -0.6443 1.2953
36 1 -0.3484 -1.7532 1.6918
37 1 0.0043 -3.4298 1.2091
38 1 -2.4432 -3.7849 3.9380
39 1 4.3990 -2.1375 0.8052
40 1 3.6028 -1.8544 -0.7615
41 1 4.0818 -4.6247 -0.4950
42 1 6.5926 -5.5071 -0.9190
43 1 5.7968 -5.2235 -2.4858
44 1 8.3231 -3.7804 -1.5526
45 1 6.5191 -3.6314 -3.9648
46 1 7.5737 -2.3697 -3.2534
47 1 9.5572 -3.3105 -4.2526
48 1 8.3413 -3.5747 -5.5436
49 1 9.7336 -5.6877 -4.6166
50 1 7.9712 -5.8624 -4.8801
51 1 9.5030 -5.5910 -2.2967
52 1 7.9734 -6.4548 -2.6188
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000751372783.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:55:49
Heat of formation + Delta-G solvation = -107.621495 kcal
Electronic energy + Delta-G solvation = -28264.147379 eV
Core-core repulsion = 24455.200494 eV
Total energy + Delta-G solvation = -3808.946885 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.14363 -39.21201 -37.85085 -36.49829 -34.32504 -33.54649 -32.38855 -31.76914
-28.95685 -28.82252 -27.18704 -26.83346 -25.66927 -25.08741 -22.60608 -20.92899
-20.51016 -20.25577 -19.70098 -18.69887 -17.34487 -16.62753 -16.36707 -16.06573
-15.60225 -15.50672 -15.23833 -14.81582 -14.61318 -14.52712 -14.07669 -13.76237
-13.50780 -13.34896 -13.26442 -12.85934 -12.57901 -12.30471 -12.18229 -12.07157
-11.88426 -11.56475 -11.41648 -11.38146 -11.26166 -11.14283 -11.04458 -10.94861
-10.93035 -10.78792 -10.73590 -10.58317 -10.49391 -10.31491 -10.17894 -9.77796
-9.64664 -9.12526 -9.01457 -8.46560 -7.75044 -6.08720 -4.13238 2.69226
3.12862 3.21878 3.27325 3.34298 3.39034 3.90306 4.38510 4.41090
4.42776 4.54228 4.83287 4.91913 5.01273 5.08630 5.12703 5.14962
5.25898 5.27309 5.33800 5.39508 5.45670 5.48391 5.54558 5.56447
5.61604 5.65123 5.70785 5.72845 5.82641 5.86270 5.88400 5.92323
6.10149 6.11668 6.14116 6.15345 6.16655 6.29881 6.32092 6.40378
6.54989 6.66586 7.00635 7.36160 7.44862 7.61238 7.87045 8.18486
8.22233 8.33966 8.78771 8.95093 9.51681 10.99265
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.014157 B = 0.002738 C = 0.002410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1977.404287 B =10223.141681 C =11613.463027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.114 4.114
3 C -0.144 4.144
4 C 0.111 3.889
5 N -0.587 5.587
6 C 0.242 3.758
7 C -0.527 4.527
8 H 0.057 0.943
9 C 0.062 3.938
10 N -0.894 5.894
11 Si 0.897 3.103
12 H -0.280 1.280
13 H -0.285 1.285
14 H -0.274 1.274
15 C 0.499 3.501
16 O -0.541 6.541
17 C 0.099 3.901
18 N -0.716 5.716
19 C 0.513 3.487
20 O -0.545 6.545
21 C -0.134 4.134
22 C -0.076 4.076
23 C -0.114 4.114
24 C -0.128 4.128
25 C -0.125 4.125
26 C -0.123 4.123
27 H 0.068 0.932
28 H 0.057 0.943
29 H 0.045 0.955
30 H 0.065 0.935
31 H 0.053 0.947
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.086 0.914
35 H 0.067 0.933
36 H 0.043 0.957
37 H 0.042 0.958
38 H 0.263 0.737
39 H 0.091 0.909
40 H 0.091 0.909
41 H 0.411 0.589
42 H 0.094 0.906
43 H 0.094 0.906
44 H 0.079 0.921
45 H 0.061 0.939
46 H 0.074 0.926
47 H 0.064 0.936
48 H 0.063 0.937
49 H 0.061 0.939
50 H 0.064 0.936
51 H 0.064 0.936
52 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.986 2.384 -13.290 20.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.133 4.133
3 C -0.202 4.202
4 C -0.013 4.013
5 N -0.317 5.317
6 C 0.123 3.877
7 C -0.566 4.566
8 H 0.075 0.925
9 C -0.140 4.140
10 N -0.533 5.533
11 Si 0.725 3.275
12 H -0.206 1.206
13 H -0.211 1.211
14 H -0.199 1.199
15 C 0.285 3.715
16 O -0.420 6.420
17 C -0.029 4.029
18 N -0.371 5.371
19 C 0.299 3.701
20 O -0.422 6.422
21 C -0.174 4.174
22 C -0.095 4.095
23 C -0.151 4.151
24 C -0.165 4.165
25 C -0.162 4.162
26 C -0.160 4.160
27 H 0.087 0.913
28 H 0.076 0.924
29 H 0.064 0.936
30 H 0.084 0.916
31 H 0.073 0.927
32 H 0.072 0.928
33 H 0.076 0.924
34 H 0.104 0.896
35 H 0.085 0.915
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.073 0.927
39 H 0.109 0.891
40 H 0.109 0.891
41 H 0.249 0.751
42 H 0.112 0.888
43 H 0.112 0.888
44 H 0.098 0.902
45 H 0.079 0.921
46 H 0.092 0.908
47 H 0.083 0.917
48 H 0.081 0.919
49 H 0.080 0.920
50 H 0.083 0.917
51 H 0.082 0.918
52 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 15.932 2.498 -13.274 20.887
hybrid contribution -0.286 -0.613 1.194 1.373
sum 15.645 1.885 -12.080 19.856
Atomic orbital electron populations
1.21935 0.94537 1.03047 1.01088 1.21576 0.97129 0.95994 0.98627
1.21783 1.00743 0.95831 1.01823 1.21641 0.99289 0.82056 0.98360
1.48169 1.21638 1.06382 1.55533 1.19459 0.78367 0.96525 0.93301
1.21427 0.95120 1.44617 0.95452 0.92510 1.24919 0.95042 0.95372
0.98702 1.69924 0.99826 1.46926 1.36619 0.86508 0.78062 0.78227
0.84697 1.20628 1.21094 1.19923 1.20201 0.85477 0.86442 0.79371
1.90655 1.74904 1.17350 1.59066 1.21188 0.92838 0.89437 0.99405
1.45835 1.19938 1.12254 1.59101 1.20695 0.80709 0.90954 0.77734
1.90670 1.66415 1.26950 1.58201 1.21853 0.97225 0.96602 1.01761
1.21530 0.94176 0.95841 0.97931 1.22406 0.98046 1.00322 0.94331
1.22538 0.99104 0.95630 0.99238 1.22354 1.01261 0.96520 0.96109
1.22242 1.00051 0.97886 0.95851 0.91310 0.92426 0.93552 0.91615
0.92740 0.92774 0.92438 0.89553 0.91462 0.93880 0.93971 0.92694
0.89111 0.89141 0.75079 0.88807 0.88793 0.90217 0.92066 0.90751
0.91683 0.91855 0.91984 0.91733 0.91752 0.91583
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.21 8.18 37.15 0.30 -1.91 16
2 C -0.11 -1.54 3.12 -90.62 -0.28 -1.83 16
3 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16
4 C 0.11 1.74 4.70 -4.04 -0.02 1.72 16
5 N -0.59 -11.75 2.28 -175.05 -0.40 -12.15 16
6 C 0.24 6.02 4.23 -5.19 -0.02 6.00 16
7 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16
8 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16
9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16
10 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16
11 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16
12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16
15 C 0.50 9.83 7.74 -10.99 -0.09 9.74 16
16 O -0.54 -12.60 15.25 5.56 0.08 -12.52 16
17 C 0.10 1.53 4.71 -5.20 -0.02 1.50 16
18 N -0.72 -10.22 5.53 -61.47 -0.34 -10.56 16
19 C 0.51 6.83 7.61 -10.98 -0.08 6.75 16
20 O -0.54 -8.68 14.79 5.56 0.08 -8.60 16
21 C -0.13 -1.31 4.83 -27.88 -0.13 -1.44 16
22 C -0.08 -0.73 2.55 -89.50 -0.23 -0.95 16
23 C -0.11 -1.13 5.40 -25.03 -0.14 -1.26 16
24 C -0.13 -1.03 6.91 -24.70 -0.17 -1.20 16
25 C -0.12 -0.91 6.83 -25.07 -0.17 -1.08 16
26 C -0.12 -0.94 6.46 -25.61 -0.17 -1.11 16
27 H 0.07 1.21 5.89 -51.93 -0.31 0.90 16
28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 0.90 7.30 -51.93 -0.38 0.52 16
31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16
34 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16
35 H 0.07 0.92 6.44 -51.93 -0.33 0.58 16
36 H 0.04 1.07 5.98 -51.93 -0.31 0.76 16
37 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16
38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16
39 H 0.09 1.36 7.40 -51.93 -0.38 0.98 16
40 H 0.09 1.30 7.26 -51.93 -0.38 0.93 16
41 H 0.41 5.81 7.44 -40.82 -0.30 5.51 16
42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
43 H 0.09 0.79 8.02 -51.93 -0.42 0.37 16
44 H 0.08 0.87 7.94 -51.93 -0.41 0.45 16
45 H 0.06 0.62 7.77 -51.93 -0.40 0.21 16
46 H 0.07 0.86 7.63 -51.92 -0.40 0.47 16
47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
49 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
50 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
51 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
52 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16
LS Contribution 407.23 15.07 6.14 6.14
Total: -1.00 -31.95 407.23 -9.44 -41.39
By element:
Atomic # 1 Polarization: 13.94 SS G_CDS: -9.42 Total: 4.52 kcal
Atomic # 6 Polarization: 1.78 SS G_CDS: -1.30 Total: 0.48 kcal
Atomic # 7 Polarization: -47.93 SS G_CDS: 0.00 Total: -47.93 kcal
Atomic # 8 Polarization: -21.28 SS G_CDS: 0.17 Total: -21.12 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -31.95 -9.44 -41.39 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751372783.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -66.233 kcal
(2) G-P(sol) polarization free energy of solvation -31.949 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.621 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds