Wall clock time and date at job start Tue Mar 31 2020 13:55:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53004 * 109.47090 * 2 1
4 4 C 1.53008 * 109.47074 * 119.99603 * 2 1 3
5 5 N 1.46498 * 109.46531 * 65.00832 * 4 2 1
6 6 C 1.46510 * 119.99707 * 269.99541 * 5 4 2
7 7 C 1.50700 * 109.47097 * 270.00394 * 6 5 4
8 8 H 1.08006 * 120.00021 * 0.02562 * 7 6 5
9 9 C 1.37878 * 120.00188 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99662 * 0.02562 * 9 7 6
11 11 Si 1.86799 * 119.99987 * 179.97438 * 9 7 6
12 12 H 1.48506 * 109.46669 * 90.00553 * 11 9 7
13 13 H 1.48497 * 109.46861 * 210.00139 * 11 9 7
14 14 H 1.48496 * 109.47502 * 330.00447 * 11 9 7
15 15 C 1.34777 * 120.00682 * 90.00141 * 5 4 2
16 16 O 1.21282 * 120.00345 * 179.97438 * 15 5 4
17 17 C 1.50699 * 119.99614 * 359.97438 * 15 5 4
18 18 N 1.46496 * 109.47317 * 180.02562 * 17 15 5
19 19 C 1.34777 * 120.00266 * 180.02562 * 18 17 15
20 20 O 1.21274 * 120.00135 * 0.27234 * 19 18 17
21 21 C 1.50706 * 119.99766 * 179.97438 * 19 18 17
22 22 C 1.52999 * 109.46573 * 179.97438 * 21 19 18
23 23 C 1.54266 * 110.03792 * 292.90549 * 22 21 19
24 24 C 1.54961 * 104.16181 * 217.14014 * 23 22 21
25 25 C 1.54885 * 102.77932 * 37.88909 * 24 23 22
26 26 C 1.53875 * 110.03091 * 175.69140 * 22 21 19
27 27 H 1.09004 * 109.46602 * 179.97438 * 1 2 3
28 28 H 1.08999 * 109.47287 * 299.99860 * 1 2 3
29 29 H 1.08998 * 109.47139 * 60.00099 * 1 2 3
30 30 H 1.08994 * 109.47625 * 239.99813 * 2 1 3
31 31 H 1.09004 * 109.47232 * 179.97438 * 3 2 1
32 32 H 1.08998 * 109.47049 * 299.99956 * 3 2 1
33 33 H 1.09008 * 109.47103 * 59.99692 * 3 2 1
34 34 H 1.08994 * 109.47229 * 305.00281 * 4 2 1
35 35 H 1.08998 * 109.47072 * 185.00113 * 4 2 1
36 36 H 1.09001 * 109.46747 * 29.99957 * 6 5 4
37 37 H 1.08999 * 109.46747 * 150.00408 * 6 5 4
38 38 H 0.96998 * 119.99896 * 179.97438 * 10 9 7
39 39 H 1.09004 * 109.47103 * 60.00237 * 17 15 5
40 40 H 1.09000 * 109.47247 * 300.00115 * 17 15 5
41 41 H 0.96999 * 119.99691 * 359.97438 * 18 17 15
42 42 H 1.09000 * 109.47161 * 299.99737 * 21 19 18
43 43 H 1.09001 * 109.46740 * 59.99879 * 21 19 18
44 44 H 1.08999 * 110.01809 * 54.30201 * 22 21 19
45 45 H 1.09000 * 110.48113 * 335.78905 * 23 22 21
46 46 H 1.09008 * 110.48152 * 98.42758 * 23 22 21
47 47 H 1.08994 * 110.72031 * 279.57006 * 24 23 22
48 48 H 1.09004 * 110.91930 * 156.30021 * 24 23 22
49 49 H 1.08998 * 110.48384 * 203.40508 * 25 24 23
50 50 H 1.09003 * 110.59736 * 80.81343 * 25 24 23
51 51 H 1.09005 * 110.03670 * 238.57201 * 26 22 21
52 52 H 1.09003 * 110.03297 * 359.94934 * 26 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2494
5 7 1.6525 -2.1328 1.1905
6 6 0.3745 -2.5660 1.7612
7 6 0.5716 -2.9409 3.2075
8 1 1.5507 -2.8637 3.6568
9 6 -0.4983 -3.3813 3.9575
10 7 -1.6906 -3.4747 3.4105
11 14 -0.2539 -3.8466 5.7500
12 1 -0.4657 -2.6511 6.6050
13 1 -1.2288 -4.9022 6.1247
14 1 1.1271 -4.3564 5.9452
15 6 2.4716 -3.0330 0.6116
16 8 2.1510 -4.2017 0.5634
17 6 3.7859 -2.5874 0.0242
18 7 4.4854 -3.7438 -0.5409
19 6 5.6901 -3.5841 -1.1238
20 8 6.1973 -2.4837 -1.1760
21 6 6.4098 -4.7739 -1.7046
22 6 7.7441 -4.3214 -2.3011
23 6 7.4960 -3.4215 -3.5292
24 6 8.6249 -3.8090 -4.5175
25 6 8.7449 -5.3402 -4.3172
26 6 8.5382 -5.5407 -2.8016
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8933 -0.5138 -0.8899
31 1 3.1300 1.4426 0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6765 1.9564 0.8900
34 1 1.6053 -0.2617 2.1370
35 1 3.1263 -0.6443 1.2953
36 1 -0.3484 -1.7532 1.6918
37 1 0.0043 -3.4298 1.2091
38 1 -2.4432 -3.7849 3.9380
39 1 4.3990 -2.1375 0.8052
40 1 3.6028 -1.8544 -0.7615
41 1 4.0818 -4.6247 -0.4950
42 1 6.5926 -5.5071 -0.9190
43 1 5.7968 -5.2235 -2.4858
44 1 8.3231 -3.7804 -1.5526
45 1 6.5191 -3.6314 -3.9648
46 1 7.5737 -2.3697 -3.2534
47 1 9.5572 -3.3105 -4.2526
48 1 8.3413 -3.5747 -5.5436
49 1 9.7336 -5.6877 -4.6166
50 1 7.9712 -5.8624 -4.8801
51 1 9.5030 -5.5910 -2.2967
52 1 7.9734 -6.4548 -2.6188
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000751372783.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:55:49
Heat of formation + Delta-G solvation = -126.330435 kcal
Electronic energy + Delta-G solvation = -28264.958659 eV
Core-core repulsion = 24455.200494 eV
Total energy + Delta-G solvation = -3809.758165 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.38747 -40.52613 -38.68013 -37.90676 -35.66850 -35.18931 -34.18080 -32.59287
-30.54568 -29.48752 -28.60400 -27.97900 -26.95201 -26.28210 -24.43097 -21.73602
-21.48875 -21.41201 -20.52223 -20.06817 -18.71474 -18.48761 -17.79341 -17.21191
-16.86376 -16.77248 -16.42527 -16.17857 -15.85488 -15.60648 -15.41265 -14.98455
-14.60390 -14.35162 -14.19860 -14.14722 -14.03456 -13.65851 -13.59900 -13.41603
-13.04550 -12.97026 -12.90101 -12.68752 -12.58368 -12.18571 -12.13637 -12.09385
-11.90118 -11.84074 -11.80223 -11.63647 -11.59030 -11.53543 -11.47699 -11.26113
-10.86735 -10.77055 -10.61670 -10.19274 -9.46199 -8.22321 -6.36121 1.36298
1.38528 1.48418 1.60368 1.69013 1.90619 2.35890 2.51872 3.07645
3.46212 3.64522 3.75267 3.83464 3.89440 3.99675 4.03944 4.17060
4.30834 4.31785 4.37981 4.45395 4.59769 4.62353 4.66250 4.67328
4.76684 4.82496 4.87124 4.90441 4.93572 4.99869 5.00183 5.04584
5.10052 5.14454 5.16664 5.21223 5.26798 5.29100 5.31383 5.42290
5.43190 5.48524 5.53117 5.57816 5.58682 5.82040 6.07208 6.49924
6.63044 6.73924 7.19267 7.21944 7.37624 8.84475
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.014157 B = 0.002738 C = 0.002410
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1977.404287 B =10223.141681 C =11613.463027
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.107 4.107
3 C -0.137 4.137
4 C 0.106 3.894
5 N -0.590 5.590
6 C 0.261 3.739
7 C -0.543 4.543
8 H 0.051 0.949
9 C 0.010 3.990
10 N -0.926 5.926
11 Si 0.964 3.036
12 H -0.265 1.265
13 H -0.282 1.282
14 H -0.274 1.274
15 C 0.494 3.506
16 O -0.585 6.585
17 C 0.114 3.886
18 N -0.720 5.720
19 C 0.512 3.488
20 O -0.571 6.571
21 C -0.129 4.129
22 C -0.076 4.076
23 C -0.115 4.115
24 C -0.126 4.126
25 C -0.123 4.123
26 C -0.119 4.119
27 H 0.032 0.968
28 H 0.051 0.949
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.067 0.933
32 H 0.067 0.933
33 H 0.060 0.940
34 H 0.077 0.923
35 H 0.094 0.906
36 H 0.039 0.961
37 H -0.003 1.003
38 H 0.267 0.733
39 H 0.101 0.899
40 H 0.106 0.894
41 H 0.413 0.587
42 H 0.112 0.888
43 H 0.111 0.889
44 H 0.063 0.937
45 H 0.058 0.942
46 H 0.051 0.949
47 H 0.065 0.935
48 H 0.069 0.931
49 H 0.073 0.927
50 H 0.069 0.931
51 H 0.069 0.931
52 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.909 2.727 -13.541 22.617
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.126 4.126
3 C -0.195 4.195
4 C -0.016 4.016
5 N -0.320 5.320
6 C 0.140 3.860
7 C -0.582 4.582
8 H 0.070 0.930
9 C -0.189 4.189
10 N -0.566 5.566
11 Si 0.788 3.212
12 H -0.190 1.190
13 H -0.207 1.207
14 H -0.198 1.198
15 C 0.282 3.718
16 O -0.466 6.466
17 C -0.014 4.014
18 N -0.374 5.374
19 C 0.301 3.699
20 O -0.451 6.451
21 C -0.169 4.169
22 C -0.095 4.095
23 C -0.153 4.153
24 C -0.163 4.163
25 C -0.160 4.160
26 C -0.157 4.157
27 H 0.051 0.949
28 H 0.070 0.930
29 H 0.085 0.915
30 H 0.086 0.914
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.079 0.921
34 H 0.095 0.905
35 H 0.113 0.887
36 H 0.057 0.943
37 H 0.015 0.985
38 H 0.076 0.924
39 H 0.119 0.881
40 H 0.124 0.876
41 H 0.250 0.750
42 H 0.130 0.870
43 H 0.130 0.870
44 H 0.081 0.919
45 H 0.076 0.924
46 H 0.070 0.930
47 H 0.083 0.917
48 H 0.088 0.912
49 H 0.091 0.909
50 H 0.088 0.912
51 H 0.088 0.912
52 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 17.881 2.876 -13.538 22.611
hybrid contribution -0.905 -0.689 1.232 1.676
sum 16.975 2.188 -12.306 21.080
Atomic orbital electron populations
1.21892 0.95786 1.00860 1.01861 1.21522 0.95963 0.97739 0.97400
1.21732 1.01563 0.93506 1.02674 1.21922 1.00927 0.79528 0.99249
1.48125 1.20208 1.08470 1.55168 1.18907 0.80623 0.94626 0.91843
1.21717 0.94922 1.44793 0.96721 0.93046 1.25786 0.94736 0.95199
1.03171 1.70039 1.00616 1.47612 1.38328 0.85473 0.77830 0.78361
0.79496 1.19040 1.20697 1.19846 1.20912 0.86531 0.85716 0.78631
1.90626 1.76084 1.19231 1.60647 1.21041 0.90292 0.90129 0.99904
1.45929 1.20317 1.11882 1.59320 1.21322 0.80046 0.91660 0.76872
1.90661 1.66884 1.28320 1.59199 1.21927 0.97033 0.95309 1.02621
1.21520 0.94080 0.96551 0.97308 1.22377 0.98671 0.99090 0.95148
1.22533 0.98333 0.96451 0.99026 1.22361 1.02138 0.95674 0.95840
1.22226 1.00110 0.97237 0.96085 0.94897 0.92957 0.91467 0.91364
0.91370 0.91443 0.92128 0.90454 0.88741 0.94331 0.98462 0.92446
0.88094 0.87573 0.74961 0.86997 0.87042 0.91876 0.92370 0.93047
0.91662 0.91249 0.90854 0.91231 0.91234 0.90427
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.36 8.18 71.98 0.59 -3.78 16
2 C -0.11 -2.77 3.12 -10.79 -0.03 -2.80 16
3 C -0.14 -2.65 9.19 71.98 0.66 -1.99 16
4 C 0.11 3.27 4.70 86.38 0.41 3.68 16
5 N -0.59 -24.14 2.28 -826.13 -1.88 -26.02 16
6 C 0.26 13.58 4.23 85.63 0.36 13.94 16
7 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16
8 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16
9 C 0.01 0.58 5.46 84.65 0.46 1.04 16
10 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16
11 Si 0.96 44.44 29.54 68.60 2.03 46.47 16
12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
15 C 0.49 19.74 7.74 87.66 0.68 20.42 16
16 O -0.58 -28.14 15.25 -3.04 -0.05 -28.19 16
17 C 0.11 3.41 4.71 85.63 0.40 3.81 16
18 N -0.72 -19.91 5.53 -466.79 -2.58 -22.49 16
19 C 0.51 13.07 7.61 87.66 0.67 13.74 16
20 O -0.57 -17.70 14.79 -3.01 -0.04 -17.74 16
21 C -0.13 -2.29 4.83 29.85 0.14 -2.14 16
22 C -0.08 -1.34 2.55 -10.07 -0.03 -1.37 16
23 C -0.12 -2.19 5.40 31.69 0.17 -2.02 16
24 C -0.13 -1.85 6.91 31.91 0.22 -1.63 16
25 C -0.12 -1.50 6.83 31.67 0.22 -1.28 16
26 C -0.12 -1.55 6.46 31.32 0.20 -1.35 16
27 H 0.03 1.20 5.89 -2.39 -0.01 1.18 16
28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.07 1.76 7.30 -2.39 -0.02 1.74 16
31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16
33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16
34 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16
35 H 0.09 2.39 6.44 -2.39 -0.02 2.38 16
36 H 0.04 2.03 5.98 -2.39 -0.01 2.01 16
37 H 0.00 -0.17 7.42 -2.39 -0.02 -0.18 16
38 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16
39 H 0.10 2.86 7.40 -2.38 -0.02 2.84 16
40 H 0.11 2.88 7.26 -2.39 -0.02 2.86 16
41 H 0.41 11.49 7.44 -92.71 -0.69 10.80 16
42 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16
43 H 0.11 1.62 8.02 -2.39 -0.02 1.60 16
44 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16
45 H 0.06 1.12 7.77 -2.39 -0.02 1.10 16
46 H 0.05 1.20 7.63 -2.38 -0.02 1.18 16
47 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16
48 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16
49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16
50 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
51 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16
52 H 0.08 0.85 7.67 -2.39 -0.02 0.83 16
Total: -1.00 -71.35 407.23 3.32 -68.03
By element:
Atomic # 1 Polarization: 26.71 SS G_CDS: 0.20 Total: 26.91 kcal
Atomic # 6 Polarization: 2.49 SS G_CDS: 5.37 Total: 7.86 kcal
Atomic # 7 Polarization: -99.16 SS G_CDS: -4.18 Total: -103.33 kcal
Atomic # 8 Polarization: -45.84 SS G_CDS: -0.09 Total: -45.93 kcal
Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal
Total: -71.35 3.32 -68.03 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000751372783.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.295 kcal
(2) G-P(sol) polarization free energy of solvation -71.354 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.650 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.330 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds