Wall clock time and date at job start Tue Mar 31 2020 13:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46693 * 2 1 4 4 C 1.52997 * 109.47291 * 119.99668 * 2 1 3 5 5 N 1.46895 * 109.47155 * 177.02795 * 4 2 1 6 6 C 1.46900 * 111.00428 * 288.02233 * 5 4 2 7 7 C 1.50703 * 109.47330 * 160.42474 * 6 5 4 8 8 H 1.08001 * 119.99746 * 4.74307 * 7 6 5 9 9 C 1.37872 * 119.99713 * 184.74254 * 7 6 5 10 10 N 1.31513 * 120.00633 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99630 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47135 * 60.00204 * 11 9 7 13 13 H 1.48506 * 109.47120 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47417 * 299.99967 * 11 9 7 15 15 C 1.46906 * 110.99951 * 164.07023 * 5 4 2 16 16 N 1.46498 * 109.47092 * 278.95366 * 15 5 4 17 17 C 1.46936 * 124.35414 * 269.72750 * 16 15 5 18 18 C 1.53884 * 105.24213 * 163.53479 * 17 16 15 19 19 C 1.53895 * 102.49534 * 24.96422 * 18 17 16 20 20 C 1.34516 * 124.34922 * 90.02418 * 16 15 5 21 21 O 1.21286 * 124.94584 * 0.36670 * 20 16 15 22 22 C 1.52290 * 110.66633 * 143.00509 * 18 17 16 23 23 C 1.53259 * 109.24109 * 178.70452 * 22 18 17 24 24 O 1.42923 * 109.30078 * 303.76463 * 23 22 18 25 25 C 1.42903 * 114.25946 * 61.80000 * 24 23 22 26 26 C 1.52270 * 111.04077 * 266.73596 * 18 17 16 27 27 H 1.09007 * 109.47130 * 299.99793 * 1 2 3 28 28 H 1.09000 * 109.47263 * 59.99905 * 1 2 3 29 29 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46927 * 240.00200 * 2 1 3 31 31 H 1.09000 * 109.47344 * 300.00045 * 3 2 1 32 32 H 1.09002 * 109.47514 * 60.00535 * 3 2 1 33 33 H 1.09008 * 109.46863 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46858 * 57.03175 * 4 2 1 35 35 H 1.09002 * 109.47354 * 297.02986 * 4 2 1 36 36 H 1.09001 * 109.47339 * 280.42500 * 6 5 4 37 37 H 1.09002 * 109.46352 * 40.42494 * 6 5 4 38 38 H 0.96993 * 120.00486 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47100 * 158.95703 * 15 5 4 40 40 H 1.08996 * 109.47481 * 38.95534 * 15 5 4 41 41 H 1.08997 * 110.27549 * 282.63126 * 17 16 15 42 42 H 1.09010 * 110.27422 * 44.70273 * 17 16 15 43 43 H 1.09004 * 110.51247 * 217.11541 * 19 18 17 44 44 H 1.09003 * 110.51924 * 94.39418 * 19 18 17 45 45 H 1.08993 * 109.51319 * 298.63469 * 22 18 17 46 46 H 1.09006 * 109.50976 * 58.77710 * 22 18 17 47 47 H 1.09001 * 109.49618 * 183.81665 * 23 22 18 48 48 H 1.09001 * 109.52376 * 63.72910 * 23 22 18 49 49 H 1.08999 * 109.49964 * 178.24687 * 25 24 23 50 50 H 1.09000 * 109.52758 * 58.15760 * 25 24 23 51 51 H 1.08996 * 109.51219 * 301.43684 * 26 18 17 52 52 H 1.09006 * 109.51027 * 61.57710 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5072 -0.7836 1.2139 6 6 3.9692 -1.7395 0.1985 7 6 5.4048 -1.4448 -0.1526 8 1 5.9458 -0.6794 0.3841 9 6 6.0275 -2.1522 -1.1589 10 7 5.3687 -3.0839 -1.8127 11 14 7.8068 -1.7864 -1.5946 12 1 8.6658 -2.0214 -0.4062 13 1 8.2389 -2.6777 -2.7010 14 1 7.9306 -0.3698 -2.0224 15 6 4.0520 -1.1167 2.5369 16 7 4.0977 0.0913 3.3644 17 6 5.2460 1.0053 3.4346 18 6 4.6963 2.2980 4.0631 19 6 3.4821 1.7902 4.8607 20 6 3.0959 0.5032 4.1620 21 8 2.0375 -0.0723 4.3015 22 6 5.7270 2.9239 4.9931 23 6 5.1594 4.2232 5.5748 24 8 4.7797 5.0930 4.5061 25 6 3.7559 4.5688 3.6580 26 6 4.2599 3.2853 2.9892 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6339 -1.7324 1.2763 35 1 1.7208 -0.1775 2.1384 36 1 3.8921 -2.7531 0.5919 37 1 3.3506 -1.6482 -0.6943 38 1 5.8069 -3.5818 -2.5204 39 1 5.0591 -1.5184 2.4245 40 1 3.4153 -1.8609 3.0152 41 1 6.0292 0.5803 4.0623 42 1 5.6302 1.2067 2.4345 43 1 2.6655 2.5106 4.8132 44 1 3.7601 1.5942 5.8963 45 1 5.9545 2.2313 5.8034 46 1 6.6369 3.1424 4.4339 47 1 5.9183 4.7096 6.1876 48 1 4.2867 3.9973 6.1876 49 1 3.5057 5.3037 2.8928 50 1 2.8696 4.3458 4.2519 51 1 5.1066 3.5193 2.3440 52 1 3.4588 2.8460 2.3946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753091025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:18 Heat of formation + Delta-G solvation = -87.358971 kcal Electronic energy + Delta-G solvation = -30348.824152 eV Core-core repulsion = 26540.755916 eV Total energy + Delta-G solvation = -3808.068236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06103 -38.87025 -37.20559 -36.26766 -34.35564 -33.17557 -32.07508 -31.37636 -29.02449 -27.55554 -27.01464 -26.62811 -25.44597 -23.88240 -23.46889 -22.83011 -21.25246 -19.51399 -19.00891 -18.86257 -16.66465 -16.61586 -16.22712 -16.03115 -15.97299 -15.11796 -14.94073 -14.77988 -14.66440 -14.25160 -14.14244 -13.84891 -13.63533 -13.24155 -13.02665 -12.78143 -12.56608 -12.47217 -12.28968 -12.04178 -11.83731 -11.71255 -11.53694 -11.48215 -11.38536 -11.26646 -11.17732 -10.81375 -10.72398 -10.65929 -10.45365 -10.41185 -10.22109 -10.12643 -9.70605 -9.61695 -9.44808 -9.29058 -8.50731 -8.41583 -7.31038 -6.06896 -4.09123 2.81765 3.28144 3.33837 3.34901 3.36952 3.70972 4.22253 4.32143 4.37446 4.45158 4.81376 4.84414 4.91886 4.92949 4.98038 5.25393 5.28678 5.33135 5.39167 5.43836 5.45987 5.51484 5.52783 5.58223 5.66247 5.75604 5.77039 5.79377 5.87712 5.96873 6.00930 6.07038 6.12338 6.14386 6.16617 6.28028 6.31103 6.36698 6.52912 6.62395 6.76325 6.94492 6.97965 7.02520 7.15272 7.31316 7.50162 7.76702 8.06770 8.13797 8.45910 8.50980 8.97565 9.55286 11.03282 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.004615 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.604973 B = 6065.065137 C = 7266.168619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.128 4.128 4 C 0.058 3.942 5 N -0.544 5.544 6 C 0.196 3.804 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.294 3.706 16 N -0.596 5.596 17 C 0.116 3.884 18 C -0.070 4.070 19 C -0.149 4.149 20 C 0.516 3.484 21 O -0.542 6.542 22 C -0.139 4.139 23 C 0.062 3.938 24 O -0.383 6.383 25 C 0.061 3.939 26 C -0.140 4.140 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.020 0.980 35 H 0.072 0.928 36 H -0.012 1.012 37 H 0.040 0.960 38 H 0.262 0.738 39 H 0.099 0.901 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.050 0.950 49 H 0.095 0.905 50 H 0.050 0.950 51 H 0.080 0.920 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.936 12.941 12.661 18.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 C -0.185 4.185 4 C -0.070 4.070 5 N -0.270 5.270 6 C 0.071 3.929 7 C -0.545 4.545 8 H 0.078 0.922 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.202 1.202 15 C 0.083 3.917 16 N -0.329 5.329 17 C -0.007 4.007 18 C -0.071 4.071 19 C -0.190 4.190 20 C 0.303 3.697 21 O -0.420 6.420 22 C -0.177 4.177 23 C -0.015 4.015 24 O -0.302 6.302 25 C -0.016 4.016 26 C -0.178 4.178 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.090 0.910 36 H 0.006 0.994 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.111 0.889 48 H 0.069 0.931 49 H 0.113 0.887 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.200 13.039 12.357 18.099 hybrid contribution 0.602 -1.066 -0.220 1.244 sum -1.599 11.973 12.138 17.124 Atomic orbital electron populations 1.21802 0.96318 1.01084 1.00875 1.21090 0.93849 0.97081 0.99078 1.21622 1.02678 0.95044 0.99154 1.22207 0.88854 0.97955 0.97995 1.61845 1.06722 1.53178 1.05251 1.19733 0.96225 0.87751 0.89218 1.21070 0.96173 1.19278 1.17961 0.92161 1.24965 0.98127 0.95161 0.96132 1.69935 1.36879 1.23317 1.23451 0.86611 0.84887 0.78208 0.77960 1.20363 1.21401 1.20225 1.21773 1.01435 0.82716 0.85739 1.48528 1.15773 1.26237 1.42402 1.22088 0.88638 0.87683 1.02324 1.20957 0.95119 0.95198 0.95803 1.22487 0.99244 0.96825 1.00404 1.20821 0.83339 0.86044 0.79501 1.90685 1.24268 1.61250 1.65754 1.22085 0.98706 0.97611 0.99319 1.22600 0.99263 0.90535 0.89114 1.87914 1.57156 1.43121 1.42028 1.22660 0.89792 0.95685 0.93421 1.22068 1.03092 0.95054 0.97545 0.93314 0.93138 0.93240 0.90677 0.94346 0.94411 0.90986 0.96213 0.90992 0.99375 0.94212 0.92830 0.88252 0.93474 0.91255 0.89243 0.88535 0.88267 0.90415 0.90203 0.88890 0.93147 0.88701 0.93173 0.90138 0.89896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.19 37.16 0.34 -1.82 16 2 C -0.09 -1.64 2.92 -90.62 -0.26 -1.91 16 3 C -0.13 -2.10 9.06 37.16 0.34 -1.77 16 4 C 0.06 1.13 4.22 -3.83 -0.02 1.11 16 5 N -0.54 -11.13 3.84 -239.98 -0.92 -12.05 16 6 C 0.20 4.83 4.54 -4.97 -0.02 4.80 16 7 C -0.51 -13.28 8.51 -34.44 -0.29 -13.57 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -25.77 13.29 55.43 0.74 -25.04 16 11 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.29 5.52 5.55 -63.31 -0.35 5.17 16 16 N -0.60 -9.32 3.15 -176.04 -0.55 -9.87 16 17 C 0.12 1.46 6.47 -3.34 -0.02 1.44 16 18 C -0.07 -0.72 0.60 -154.32 -0.09 -0.81 16 19 C -0.15 -1.66 5.09 -27.05 -0.14 -1.80 16 20 C 0.52 8.10 7.35 -10.73 -0.08 8.02 16 21 O -0.54 -10.48 15.84 5.55 0.09 -10.39 16 22 C -0.14 -1.13 4.74 -26.96 -0.13 -1.26 16 23 C 0.06 0.50 6.68 37.29 0.25 0.74 16 24 O -0.38 -4.00 10.74 -35.23 -0.38 -4.38 16 25 C 0.06 0.58 6.66 37.29 0.25 0.83 16 26 C -0.14 -1.49 4.82 -26.97 -0.13 -1.62 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.51 6.46 -51.93 -0.34 1.18 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.33 7.69 -51.92 -0.40 0.93 16 34 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 35 H 0.07 1.42 5.26 -51.93 -0.27 1.15 16 36 H -0.01 -0.31 8.00 -51.93 -0.42 -0.72 16 37 H 0.04 1.07 6.21 -51.93 -0.32 0.74 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.10 1.93 7.24 -51.93 -0.38 1.56 16 40 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 41 H 0.07 0.77 7.87 -51.93 -0.41 0.36 16 42 H 0.09 1.26 7.89 -51.92 -0.41 0.85 16 43 H 0.10 1.02 6.37 -51.93 -0.33 0.69 16 44 H 0.10 0.93 7.78 -51.93 -0.40 0.53 16 45 H 0.08 0.54 8.01 -51.93 -0.42 0.12 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.05 0.45 6.68 -51.93 -0.35 0.10 16 51 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 52 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 396.01 15.07 5.97 5.97 Total: -1.00 -30.16 396.01 -9.97 -40.13 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -9.43 Total: 0.82 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -0.46 Total: -0.97 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: -0.74 Total: -46.96 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.29 Total: -14.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.16 -9.97 -40.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753091025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.230 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds