Wall clock time and date at job start Tue Mar 31 2020 13:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46693 * 2 1 4 4 C 1.52997 * 109.47291 * 119.99668 * 2 1 3 5 5 N 1.46895 * 109.47155 * 177.02795 * 4 2 1 6 6 C 1.46900 * 111.00428 * 288.02233 * 5 4 2 7 7 C 1.50703 * 109.47330 * 160.42474 * 6 5 4 8 8 H 1.08001 * 119.99746 * 4.74307 * 7 6 5 9 9 C 1.37872 * 119.99713 * 184.74254 * 7 6 5 10 10 N 1.31513 * 120.00633 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99630 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47135 * 60.00204 * 11 9 7 13 13 H 1.48506 * 109.47120 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47417 * 299.99967 * 11 9 7 15 15 C 1.46906 * 110.99951 * 164.07023 * 5 4 2 16 16 N 1.46498 * 109.47092 * 278.95366 * 15 5 4 17 17 C 1.46936 * 124.35414 * 269.72750 * 16 15 5 18 18 C 1.53884 * 105.24213 * 163.53479 * 17 16 15 19 19 C 1.53895 * 102.49534 * 24.96422 * 18 17 16 20 20 C 1.34516 * 124.34922 * 90.02418 * 16 15 5 21 21 O 1.21286 * 124.94584 * 0.36670 * 20 16 15 22 22 C 1.52290 * 110.66633 * 143.00509 * 18 17 16 23 23 C 1.53259 * 109.24109 * 178.70452 * 22 18 17 24 24 O 1.42923 * 109.30078 * 303.76463 * 23 22 18 25 25 C 1.42903 * 114.25946 * 61.80000 * 24 23 22 26 26 C 1.52270 * 111.04077 * 266.73596 * 18 17 16 27 27 H 1.09007 * 109.47130 * 299.99793 * 1 2 3 28 28 H 1.09000 * 109.47263 * 59.99905 * 1 2 3 29 29 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.46927 * 240.00200 * 2 1 3 31 31 H 1.09000 * 109.47344 * 300.00045 * 3 2 1 32 32 H 1.09002 * 109.47514 * 60.00535 * 3 2 1 33 33 H 1.09008 * 109.46863 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.46858 * 57.03175 * 4 2 1 35 35 H 1.09002 * 109.47354 * 297.02986 * 4 2 1 36 36 H 1.09001 * 109.47339 * 280.42500 * 6 5 4 37 37 H 1.09002 * 109.46352 * 40.42494 * 6 5 4 38 38 H 0.96993 * 120.00486 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47100 * 158.95703 * 15 5 4 40 40 H 1.08996 * 109.47481 * 38.95534 * 15 5 4 41 41 H 1.08997 * 110.27549 * 282.63126 * 17 16 15 42 42 H 1.09010 * 110.27422 * 44.70273 * 17 16 15 43 43 H 1.09004 * 110.51247 * 217.11541 * 19 18 17 44 44 H 1.09003 * 110.51924 * 94.39418 * 19 18 17 45 45 H 1.08993 * 109.51319 * 298.63469 * 22 18 17 46 46 H 1.09006 * 109.50976 * 58.77710 * 22 18 17 47 47 H 1.09001 * 109.49618 * 183.81665 * 23 22 18 48 48 H 1.09001 * 109.52376 * 63.72910 * 23 22 18 49 49 H 1.08999 * 109.49964 * 178.24687 * 25 24 23 50 50 H 1.09000 * 109.52758 * 58.15760 * 25 24 23 51 51 H 1.08996 * 109.51219 * 301.43684 * 26 18 17 52 52 H 1.09006 * 109.51027 * 61.57710 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5072 -0.7836 1.2139 6 6 3.9692 -1.7395 0.1985 7 6 5.4048 -1.4448 -0.1526 8 1 5.9458 -0.6794 0.3841 9 6 6.0275 -2.1522 -1.1589 10 7 5.3687 -3.0839 -1.8127 11 14 7.8068 -1.7864 -1.5946 12 1 8.6658 -2.0214 -0.4062 13 1 8.2389 -2.6777 -2.7010 14 1 7.9306 -0.3698 -2.0224 15 6 4.0520 -1.1167 2.5369 16 7 4.0977 0.0913 3.3644 17 6 5.2460 1.0053 3.4346 18 6 4.6963 2.2980 4.0631 19 6 3.4821 1.7902 4.8607 20 6 3.0959 0.5032 4.1620 21 8 2.0375 -0.0723 4.3015 22 6 5.7270 2.9239 4.9931 23 6 5.1594 4.2232 5.5748 24 8 4.7797 5.0930 4.5061 25 6 3.7559 4.5688 3.6580 26 6 4.2599 3.2853 2.9892 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6339 -1.7324 1.2763 35 1 1.7208 -0.1775 2.1384 36 1 3.8921 -2.7531 0.5919 37 1 3.3506 -1.6482 -0.6943 38 1 5.8069 -3.5818 -2.5204 39 1 5.0591 -1.5184 2.4245 40 1 3.4153 -1.8609 3.0152 41 1 6.0292 0.5803 4.0623 42 1 5.6302 1.2067 2.4345 43 1 2.6655 2.5106 4.8132 44 1 3.7601 1.5942 5.8963 45 1 5.9545 2.2313 5.8034 46 1 6.6369 3.1424 4.4339 47 1 5.9183 4.7096 6.1876 48 1 4.2867 3.9973 6.1876 49 1 3.5057 5.3037 2.8928 50 1 2.8696 4.3458 4.2519 51 1 5.1066 3.5193 2.3440 52 1 3.4588 2.8460 2.3946 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753091025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:17 Heat of formation + Delta-G solvation = -105.482400 kcal Electronic energy + Delta-G solvation = -30349.610042 eV Core-core repulsion = 26540.755916 eV Total energy + Delta-G solvation = -3808.854127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.10191 -39.91479 -38.78127 -37.40151 -35.79090 -34.85161 -33.66394 -32.07585 -30.16244 -29.25468 -28.28632 -27.95632 -26.82757 -25.29432 -24.58129 -23.70960 -22.92898 -20.68255 -20.53365 -19.89644 -18.60688 -17.78337 -17.33127 -17.07830 -16.89776 -16.59811 -16.29161 -16.24018 -15.68479 -15.50966 -15.41832 -15.13025 -14.90927 -14.58226 -14.29376 -14.11797 -13.93741 -13.71393 -13.47260 -13.28965 -13.18634 -13.05459 -13.00374 -12.82010 -12.62637 -12.57826 -12.47439 -12.18002 -12.15519 -12.05476 -11.81951 -11.71402 -11.48700 -11.34414 -11.27296 -11.17098 -10.73482 -10.58230 -10.36185 -9.80717 -9.08440 -8.17295 -6.27385 1.42754 1.45130 1.52535 1.56056 2.07525 2.41410 3.05729 3.14167 3.28486 3.32979 3.36852 3.63353 3.90343 3.93451 4.07193 4.11624 4.13461 4.19681 4.29576 4.31249 4.46572 4.56342 4.57786 4.59115 4.63999 4.68199 4.72299 4.73257 4.80415 4.82207 4.86408 4.88065 4.94122 4.99966 5.05243 5.06928 5.12367 5.15845 5.20677 5.26741 5.30595 5.35409 5.47071 5.48277 5.58011 5.70539 6.06146 6.23169 6.31973 6.36242 6.56319 6.86392 7.19067 7.42156 8.93137 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010748 B = 0.004615 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.604973 B = 6065.065137 C = 7266.168619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 C -0.116 4.116 4 C 0.065 3.935 5 N -0.537 5.537 6 C 0.214 3.786 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.005 3.995 10 N -0.935 5.935 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.289 1.289 14 H -0.269 1.269 15 C 0.300 3.700 16 N -0.598 5.598 17 C 0.112 3.888 18 C -0.058 4.058 19 C -0.135 4.135 20 C 0.507 3.493 21 O -0.583 6.583 22 C -0.133 4.133 23 C 0.057 3.943 24 O -0.400 6.400 25 C 0.065 3.935 26 C -0.138 4.138 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.000 1.000 35 H 0.074 0.926 36 H -0.042 1.042 37 H 0.013 0.987 38 H 0.263 0.737 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.108 0.892 44 H 0.127 0.873 45 H 0.098 0.902 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.062 0.938 49 H 0.100 0.900 50 H 0.059 0.941 51 H 0.073 0.927 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.889 15.456 14.320 21.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.112 4.112 3 C -0.173 4.173 4 C -0.063 4.063 5 N -0.263 5.263 6 C 0.087 3.913 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.190 1.190 13 H -0.214 1.214 14 H -0.194 1.194 15 C 0.088 3.912 16 N -0.330 5.330 17 C -0.010 4.010 18 C -0.059 4.059 19 C -0.174 4.174 20 C 0.296 3.704 21 O -0.464 6.464 22 C -0.171 4.171 23 C -0.019 4.019 24 O -0.319 6.319 25 C -0.012 4.012 26 C -0.175 4.175 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.019 0.981 35 H 0.092 0.908 36 H -0.025 1.025 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.145 0.855 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.128 0.872 48 H 0.080 0.920 49 H 0.118 0.882 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.134 15.593 14.048 21.019 hybrid contribution 0.243 -1.876 -0.711 2.021 sum -0.892 13.717 13.337 19.153 Atomic orbital electron populations 1.21734 0.93819 1.01445 1.02312 1.21092 0.95985 0.97457 0.96679 1.21494 1.01018 0.94171 1.00644 1.22194 0.87984 0.97121 0.99014 1.61862 1.07534 1.51461 1.05424 1.19357 0.95695 0.87021 0.89200 1.21329 0.96690 1.19120 1.17900 0.91612 1.25845 1.02631 0.94827 0.95998 1.70081 1.38849 1.24503 1.24115 0.85503 0.79474 0.78139 0.77890 1.19017 1.21440 1.19405 1.21507 1.00313 0.84263 0.85132 1.48524 1.17193 1.25659 1.41660 1.22304 0.88070 0.88448 1.02168 1.20920 0.95324 0.93841 0.95822 1.22494 0.99777 0.93976 1.01194 1.21659 0.82434 0.87104 0.79152 1.90659 1.25914 1.62764 1.67056 1.22079 0.97680 0.98046 0.99273 1.22801 1.00286 0.90134 0.88706 1.87904 1.57331 1.44012 1.42662 1.22642 0.89891 0.94984 0.93652 1.22019 1.02161 0.95840 0.97525 0.92305 0.91166 0.93509 0.93648 0.92560 0.93103 0.93375 0.98139 0.90780 1.02474 0.96865 0.92842 0.89171 0.94961 0.89177 0.90997 0.87419 0.85505 0.88365 0.90228 0.87158 0.91977 0.88177 0.92278 0.90835 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.19 71.98 0.66 -3.36 16 2 C -0.09 -3.41 2.92 -10.79 -0.03 -3.44 16 3 C -0.12 -3.79 9.06 71.98 0.65 -3.14 16 4 C 0.07 2.64 4.22 86.30 0.36 3.00 16 5 N -0.54 -23.08 3.84 -913.15 -3.51 -26.59 16 6 C 0.21 11.16 4.54 85.56 0.39 11.55 16 7 C -0.51 -27.61 8.51 25.60 0.22 -27.39 16 8 H 0.07 3.41 7.81 -2.91 -0.02 3.39 16 9 C 0.01 0.28 5.46 84.65 0.46 0.74 16 10 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 11 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 12 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 13 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 15 C 0.30 11.72 5.55 170.81 0.95 12.67 16 16 N -0.60 -18.67 3.15 -829.40 -2.61 -21.28 16 17 C 0.11 2.69 6.47 86.59 0.56 3.25 16 18 C -0.06 -1.06 0.60 -52.06 -0.03 -1.09 16 19 C -0.13 -2.62 5.09 30.39 0.15 -2.47 16 20 C 0.51 15.53 7.35 87.94 0.65 16.18 16 21 O -0.58 -22.62 15.84 -3.05 -0.05 -22.66 16 22 C -0.13 -1.68 4.74 30.45 0.14 -1.53 16 23 C 0.06 0.69 6.68 72.07 0.48 1.18 16 24 O -0.40 -7.15 10.74 -148.98 -1.60 -8.75 16 25 C 0.06 1.08 6.66 72.07 0.48 1.56 16 26 C -0.14 -2.72 4.82 30.44 0.15 -2.57 16 27 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.93 6.46 -2.39 -0.02 1.91 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.05 1.79 7.69 -2.38 -0.02 1.77 16 34 H 0.00 0.01 8.05 -2.38 -0.02 -0.01 16 35 H 0.07 3.00 5.26 -2.39 -0.01 2.99 16 36 H -0.04 -2.43 8.00 -2.39 -0.02 -2.45 16 37 H 0.01 0.76 6.21 -2.39 -0.01 0.75 16 38 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.09 3.66 7.24 -2.39 -0.02 3.64 16 40 H 0.03 1.35 7.70 -2.39 -0.02 1.34 16 41 H 0.09 1.80 7.87 -2.39 -0.02 1.78 16 42 H 0.07 2.00 7.89 -2.38 -0.02 1.98 16 43 H 0.11 1.94 6.37 -2.38 -0.02 1.93 16 44 H 0.13 1.85 7.78 -2.39 -0.02 1.83 16 45 H 0.10 0.89 8.01 -2.39 -0.02 0.87 16 46 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 47 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16 49 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.06 0.88 6.68 -2.39 -0.02 0.86 16 51 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -67.80 396.01 1.66 -66.15 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.87 Total: 18.23 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.25 Total: 5.13 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -5.84 Total: -102.94 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -1.65 Total: -31.42 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -67.80 1.66 -66.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753091025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.336 kcal (2) G-P(sol) polarization free energy of solvation -67.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds