Wall clock time and date at job start Tue Mar 31 2020 14:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47249 * 2 1 4 4 C 1.53002 * 109.47084 * 240.00142 * 2 1 3 5 5 O 1.45198 * 109.47469 * 119.99973 * 2 1 3 6 6 C 1.34641 * 116.99706 * 59.99597 * 5 2 1 7 7 O 1.21507 * 120.00031 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99747 * 180.02562 * 6 5 2 9 9 C 1.47575 * 134.49078 * 180.02562 * 8 6 5 10 10 C 1.53941 * 86.11575 * 155.35778 * 9 8 6 11 11 C 1.53007 * 113.74123 * 137.95233 * 10 9 8 12 12 N 1.46901 * 109.47149 * 176.92337 * 11 10 9 13 13 C 1.46900 * 110.99753 * 189.99897 * 12 11 10 14 14 C 1.50698 * 109.47221 * 75.52806 * 13 12 11 15 15 H 1.07999 * 119.99821 * 355.47980 * 14 13 12 16 16 C 1.37875 * 120.00251 * 175.48004 * 14 13 12 17 17 N 1.31516 * 119.99707 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47110 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46934 * 120.00290 * 18 16 14 21 21 H 1.48496 * 109.46745 * 240.00028 * 18 16 14 22 22 C 1.46905 * 110.99739 * 66.04774 * 12 11 10 23 23 C 1.52998 * 109.46891 * 187.84466 * 22 12 11 24 24 C 1.52998 * 117.50079 * 243.47891 * 23 22 12 25 25 C 1.52999 * 117.50019 * 174.85357 * 23 22 12 26 26 C 1.47810 * 134.45603 * 359.87172 * 8 6 5 27 27 H 1.09001 * 109.47038 * 300.00143 * 1 2 3 28 28 H 1.08997 * 109.46966 * 59.99614 * 1 2 3 29 29 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47116 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46726 * 300.00022 * 3 2 1 32 32 H 1.08992 * 109.46699 * 59.99652 * 3 2 1 33 33 H 1.09002 * 109.47073 * 299.99434 * 4 2 1 34 34 H 1.08995 * 109.47498 * 60.00103 * 4 2 1 35 35 H 1.09006 * 109.47131 * 180.02562 * 4 2 1 36 36 H 1.08997 * 113.77147 * 41.05272 * 9 8 6 37 37 H 1.08998 * 113.76894 * 269.66114 * 9 8 6 38 38 H 1.08992 * 113.74327 * 269.15028 * 10 9 8 39 39 H 1.08998 * 109.46950 * 56.92062 * 11 10 9 40 40 H 1.09003 * 109.46800 * 296.92673 * 11 10 9 41 41 H 1.09002 * 109.46788 * 195.52486 * 13 12 11 42 42 H 1.08996 * 109.47012 * 315.52172 * 13 12 11 43 43 H 0.97002 * 119.99910 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.46870 * 307.84618 * 22 12 11 45 45 H 1.08994 * 109.47159 * 67.84517 * 22 12 11 46 46 H 1.09005 * 115.55187 * 29.18706 * 23 22 12 47 47 H 1.09001 * 117.49456 * 359.97438 * 24 23 22 48 48 H 1.08991 * 117.50284 * 145.02308 * 24 23 22 49 49 H 1.08995 * 117.50361 * 214.97989 * 25 23 22 50 50 H 1.09000 * 117.49507 * 0.02562 * 25 23 22 51 51 H 1.08995 * 113.77130 * 90.37683 * 26 8 6 52 52 H 1.09000 * 113.83547 * 318.91439 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.8723 -4.0476 2.8962 10 6 3.1930 -3.8565 3.6637 11 6 3.1675 -4.4238 5.0845 12 7 4.4900 -4.2577 5.7019 13 6 4.5760 -4.9963 6.9689 14 6 4.7261 -6.4683 6.6830 15 1 4.6815 -6.8281 5.6657 16 6 4.9203 -7.3557 7.7202 17 7 4.9741 -6.9175 8.9591 18 14 5.1056 -9.1804 7.3659 19 1 5.0078 -9.4129 5.9025 20 1 6.4282 -9.6475 7.8536 21 1 4.0288 -9.9312 8.0600 22 6 4.8042 -2.8362 5.8988 23 6 6.2566 -2.6939 6.3584 24 6 6.5031 -2.1073 7.7498 25 6 6.8162 -1.2773 6.5032 26 6 2.9029 -2.3464 3.5939 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 1.9271 -4.7978 2.1074 37 1 1.0027 -4.1702 3.5419 38 1 4.0756 -4.1601 3.1008 39 1 2.9139 -5.4833 5.0481 40 1 2.4214 -3.8918 5.6748 41 1 5.4389 -4.6464 7.5355 42 1 3.6684 -4.8294 7.5490 43 1 5.1111 -7.5418 9.6888 44 1 4.6660 -2.3001 4.9599 45 1 4.1409 -2.4191 6.6564 46 1 6.9378 -3.4711 6.0117 47 1 5.6305 -1.8224 8.3376 48 1 7.3464 -2.4985 8.3188 49 1 7.8655 -1.1225 6.2522 50 1 6.1495 -0.4467 6.2715 51 1 2.3370 -1.9679 4.4451 52 1 3.7790 -1.7412 3.3610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779479747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:36 Heat of formation + Delta-G solvation = -17.014031 kcal Electronic energy + Delta-G solvation = -28472.472227 eV Core-core repulsion = 24667.454376 eV Total energy + Delta-G solvation = -3805.017850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87784 -39.49131 -37.66427 -36.57470 -35.22805 -34.14323 -32.54292 -30.28814 -27.78848 -27.62767 -27.57330 -26.58659 -26.19403 -23.95815 -22.20313 -21.91137 -21.07691 -20.06282 -19.65477 -19.14750 -17.76325 -16.76358 -16.57752 -16.29021 -15.57786 -15.33182 -15.20057 -14.69492 -14.42033 -14.28062 -14.11461 -13.77406 -13.42692 -13.12334 -12.83890 -12.68632 -12.62252 -12.49536 -12.32879 -12.09448 -12.07652 -12.03098 -11.66974 -11.55350 -11.39854 -11.22432 -11.13131 -11.01458 -10.86177 -10.63269 -10.53225 -10.49992 -10.42619 -9.99646 -9.86859 -9.84629 -9.34170 -9.18492 -8.78122 -8.41358 -7.31207 -6.01912 -4.02808 1.95537 2.84531 3.30862 3.38986 3.43278 3.67574 4.19295 4.37581 4.46230 4.51463 4.55423 4.69561 4.76373 5.01893 5.07682 5.16896 5.23729 5.29366 5.31432 5.32751 5.34759 5.40689 5.46170 5.46386 5.53886 5.58318 5.61610 5.64809 5.69319 5.73419 5.79827 5.89822 5.95149 6.01439 6.07912 6.09235 6.13582 6.22713 6.28465 6.39756 6.42997 6.47341 6.57212 6.78153 7.26005 7.35175 7.66749 7.81530 8.11538 8.18357 8.31203 8.53207 9.05327 9.61359 11.08524 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.002825 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.181239 B = 9909.627561 C =11420.265018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.671 3.329 7 O -0.574 6.574 8 N -0.633 5.633 9 C 0.136 3.864 10 C -0.112 4.112 11 C 0.073 3.927 12 N -0.531 5.531 13 C 0.191 3.809 14 C -0.503 4.503 15 H 0.063 0.937 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.894 3.106 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.081 3.919 23 C -0.129 4.129 24 C -0.178 4.178 25 C -0.190 4.190 26 C 0.108 3.892 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.043 0.957 42 H -0.013 1.013 43 H 0.260 0.740 44 H 0.067 0.933 45 H 0.021 0.979 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.084 0.916 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 15.575 -13.658 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.428 3.572 7 O -0.465 6.465 8 N -0.375 5.375 9 C 0.015 3.985 10 C -0.132 4.132 11 C -0.057 4.057 12 N -0.256 5.256 13 C 0.066 3.934 14 C -0.542 4.542 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.047 4.047 23 C -0.148 4.148 24 C -0.215 4.215 25 C -0.227 4.227 26 C -0.014 4.014 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.005 0.995 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.130 0.870 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.102 0.898 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.550 15.334 -14.281 21.443 hybrid contribution -0.535 -0.558 0.565 0.958 sum -5.085 14.776 -13.716 20.792 Atomic orbital electron populations 1.22508 0.94147 1.05026 1.02304 1.22046 0.94285 0.91528 0.82353 1.21850 1.02298 0.92582 1.02982 1.22515 1.01597 1.03529 0.96381 1.86321 1.71732 1.23597 1.46076 1.17569 0.77966 0.80066 0.81629 1.90874 1.41658 1.70495 1.43444 1.48900 1.53666 1.14523 1.20376 1.23285 0.98293 0.80841 0.96122 1.23276 0.97803 0.93862 0.98221 1.21923 0.90877 1.01955 0.90903 1.62140 1.26508 1.07566 1.29344 1.19787 0.96416 0.93078 0.84100 1.21212 1.48417 0.91240 0.93339 0.91872 1.24974 0.95663 0.98938 0.95045 1.69968 1.50573 1.34610 0.98693 0.86502 0.77558 0.85304 0.78420 1.19642 1.21139 1.21226 1.21739 0.93138 0.91200 0.98633 1.22243 0.97986 0.95418 0.99141 1.22959 1.03208 1.04182 0.91160 1.22941 1.01160 0.94919 1.03726 1.23599 0.93371 0.98252 0.86170 0.92273 0.91249 0.89412 0.91445 0.90239 0.91521 0.89370 0.91284 0.92163 0.89572 0.89357 0.86937 0.89051 0.95617 0.93938 0.99546 0.93076 0.91491 0.96054 0.86950 0.89325 0.89146 0.89375 0.89522 0.89758 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.37 37.16 0.31 -1.55 16 2 C 0.13 1.44 1.13 -90.62 -0.10 1.33 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 5 O -0.36 -4.86 9.87 -40.33 -0.40 -5.26 16 6 C 0.67 10.00 8.22 54.06 0.44 10.44 16 7 O -0.57 -9.51 12.61 -19.28 -0.24 -9.76 16 8 N -0.63 -8.61 3.61 -184.03 -0.66 -9.27 16 9 C 0.14 1.68 8.41 -2.97 -0.02 1.66 16 10 C -0.11 -1.47 3.68 -89.70 -0.33 -1.80 16 11 C 0.07 1.18 4.71 -3.82 -0.02 1.16 16 12 N -0.53 -10.16 4.44 -236.07 -1.05 -11.21 16 13 C 0.19 4.62 4.62 -4.98 -0.02 4.59 16 14 C -0.50 -13.40 8.60 -34.44 -0.30 -13.70 16 15 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 16 C 0.05 1.50 5.46 -17.82 -0.10 1.41 16 17 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 18 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.08 1.32 4.88 -3.82 -0.02 1.30 16 23 C -0.13 -2.09 4.56 -90.62 -0.41 -2.51 16 24 C -0.18 -2.74 9.92 -26.73 -0.27 -3.00 16 25 C -0.19 -2.50 10.25 -26.73 -0.27 -2.77 16 26 C 0.11 1.31 6.52 -2.85 -0.02 1.29 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.09 1.64 7.31 -51.93 -0.38 1.26 16 40 H 0.03 0.41 7.86 -51.93 -0.41 0.00 16 41 H 0.04 1.11 6.53 -51.93 -0.34 0.77 16 42 H -0.01 -0.35 8.00 -51.93 -0.42 -0.76 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.07 0.93 4.83 -51.93 -0.25 0.68 16 45 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 46 H 0.11 2.03 8.14 -51.93 -0.42 1.60 16 47 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 52 H 0.08 0.98 7.35 -51.93 -0.38 0.60 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -30.42 408.61 -10.44 -40.86 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -9.48 Total: 2.09 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.49 Total: -4.49 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.98 Total: -45.69 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.64 Total: -15.02 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.42 -10.44 -40.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779479747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.850 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds