Wall clock time and date at job start Tue Mar 31 2020 14:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47249 * 2 1 4 4 C 1.53002 * 109.47084 * 240.00142 * 2 1 3 5 5 O 1.45198 * 109.47469 * 119.99973 * 2 1 3 6 6 C 1.34641 * 116.99706 * 59.99597 * 5 2 1 7 7 O 1.21507 * 120.00031 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99747 * 180.02562 * 6 5 2 9 9 C 1.47575 * 134.49078 * 180.02562 * 8 6 5 10 10 C 1.53941 * 86.11575 * 155.35778 * 9 8 6 11 11 C 1.53007 * 113.74123 * 137.95233 * 10 9 8 12 12 N 1.46901 * 109.47149 * 176.92337 * 11 10 9 13 13 C 1.46900 * 110.99753 * 189.99897 * 12 11 10 14 14 C 1.50698 * 109.47221 * 75.52806 * 13 12 11 15 15 H 1.07999 * 119.99821 * 355.47980 * 14 13 12 16 16 C 1.37875 * 120.00251 * 175.48004 * 14 13 12 17 17 N 1.31516 * 119.99707 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00004 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47110 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46934 * 120.00290 * 18 16 14 21 21 H 1.48496 * 109.46745 * 240.00028 * 18 16 14 22 22 C 1.46905 * 110.99739 * 66.04774 * 12 11 10 23 23 C 1.52998 * 109.46891 * 187.84466 * 22 12 11 24 24 C 1.52998 * 117.50079 * 243.47891 * 23 22 12 25 25 C 1.52999 * 117.50019 * 174.85357 * 23 22 12 26 26 C 1.47810 * 134.45603 * 359.87172 * 8 6 5 27 27 H 1.09001 * 109.47038 * 300.00143 * 1 2 3 28 28 H 1.08997 * 109.46966 * 59.99614 * 1 2 3 29 29 H 1.08998 * 109.47424 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47116 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46726 * 300.00022 * 3 2 1 32 32 H 1.08992 * 109.46699 * 59.99652 * 3 2 1 33 33 H 1.09002 * 109.47073 * 299.99434 * 4 2 1 34 34 H 1.08995 * 109.47498 * 60.00103 * 4 2 1 35 35 H 1.09006 * 109.47131 * 180.02562 * 4 2 1 36 36 H 1.08997 * 113.77147 * 41.05272 * 9 8 6 37 37 H 1.08998 * 113.76894 * 269.66114 * 9 8 6 38 38 H 1.08992 * 113.74327 * 269.15028 * 10 9 8 39 39 H 1.08998 * 109.46950 * 56.92062 * 11 10 9 40 40 H 1.09003 * 109.46800 * 296.92673 * 11 10 9 41 41 H 1.09002 * 109.46788 * 195.52486 * 13 12 11 42 42 H 1.08996 * 109.47012 * 315.52172 * 13 12 11 43 43 H 0.97002 * 119.99910 * 180.02562 * 17 16 14 44 44 H 1.09002 * 109.46870 * 307.84618 * 22 12 11 45 45 H 1.08994 * 109.47159 * 67.84517 * 22 12 11 46 46 H 1.09005 * 115.55187 * 29.18706 * 23 22 12 47 47 H 1.09001 * 117.49456 * 359.97438 * 24 23 22 48 48 H 1.08991 * 117.50284 * 145.02308 * 24 23 22 49 49 H 1.08995 * 117.50361 * 214.97989 * 25 23 22 50 50 H 1.09000 * 117.49507 * 0.02562 * 25 23 22 51 51 H 1.08995 * 113.77130 * 90.37683 * 26 8 6 52 52 H 1.09000 * 113.83547 * 318.91439 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5096 0.5036 8 7 2.0673 -2.6654 2.4172 9 6 1.8723 -4.0476 2.8962 10 6 3.1930 -3.8565 3.6637 11 6 3.1675 -4.4238 5.0845 12 7 4.4900 -4.2577 5.7019 13 6 4.5760 -4.9963 6.9689 14 6 4.7261 -6.4683 6.6830 15 1 4.6815 -6.8281 5.6657 16 6 4.9203 -7.3557 7.7202 17 7 4.9741 -6.9175 8.9591 18 14 5.1056 -9.1804 7.3659 19 1 5.0078 -9.4129 5.9025 20 1 6.4282 -9.6475 7.8536 21 1 4.0288 -9.9312 8.0600 22 6 4.8042 -2.8362 5.8988 23 6 6.2566 -2.6939 6.3584 24 6 6.5031 -2.1073 7.7498 25 6 6.8162 -1.2773 6.5032 26 6 2.9029 -2.3464 3.5939 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2491 36 1 1.9271 -4.7978 2.1074 37 1 1.0027 -4.1702 3.5419 38 1 4.0756 -4.1601 3.1008 39 1 2.9139 -5.4833 5.0481 40 1 2.4214 -3.8918 5.6748 41 1 5.4389 -4.6464 7.5355 42 1 3.6684 -4.8294 7.5490 43 1 5.1111 -7.5418 9.6888 44 1 4.6660 -2.3001 4.9599 45 1 4.1409 -2.4191 6.6564 46 1 6.9378 -3.4711 6.0117 47 1 5.6305 -1.8224 8.3376 48 1 7.3464 -2.4985 8.3188 49 1 7.8655 -1.1225 6.2522 50 1 6.1495 -0.4467 6.2715 51 1 2.3370 -1.9679 4.4451 52 1 3.7790 -1.7412 3.3610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779479747.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:36 Heat of formation + Delta-G solvation = -34.454655 kcal Electronic energy + Delta-G solvation = -28473.228509 eV Core-core repulsion = 24667.454376 eV Total energy + Delta-G solvation = -3805.774133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.91898 -40.57656 -38.94813 -37.63912 -36.65480 -35.04444 -34.53796 -31.53584 -29.49882 -28.36551 -28.29627 -27.94735 -27.25224 -25.61328 -23.47436 -23.09622 -22.40876 -21.15692 -20.99419 -20.19130 -18.80550 -18.48905 -17.72152 -17.48742 -16.89952 -16.66861 -16.30804 -16.16878 -15.61244 -15.45010 -15.22077 -14.92925 -14.66961 -14.31468 -14.14662 -14.02241 -13.77688 -13.48471 -13.33138 -13.19343 -13.09502 -12.90470 -12.86255 -12.75394 -12.67596 -12.49636 -12.45859 -12.30593 -12.23343 -12.19810 -12.11421 -11.70838 -11.49305 -11.39258 -11.29525 -11.02870 -10.99323 -10.64394 -10.48065 -9.84797 -8.91622 -8.12594 -6.20733 0.97153 1.43003 1.44934 1.57110 1.74281 2.44816 2.71848 2.98922 3.17804 3.23422 3.51955 3.75673 3.80161 3.91476 3.94795 3.97689 4.08852 4.15409 4.23390 4.32374 4.38955 4.46801 4.51139 4.60754 4.61483 4.61855 4.64803 4.75704 4.76226 4.79777 4.83751 4.84360 4.87916 4.90979 4.95837 5.03823 5.10925 5.12864 5.27500 5.28396 5.32600 5.33474 5.38505 5.42921 5.48508 5.51407 5.75255 6.17713 6.48857 6.59773 6.74710 6.96588 7.23135 7.48318 8.97598 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.002825 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.181239 B = 9909.627561 C =11420.265018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 C -0.134 4.134 4 C -0.179 4.179 5 O -0.368 6.368 6 C 0.666 3.334 7 O -0.597 6.597 8 N -0.637 5.637 9 C 0.137 3.863 10 C -0.100 4.100 11 C 0.076 3.924 12 N -0.538 5.538 13 C 0.209 3.791 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.002 3.998 17 N -0.935 5.935 18 Si 0.960 3.040 19 H -0.263 1.263 20 H -0.283 1.283 21 H -0.282 1.282 22 C 0.086 3.914 23 C -0.154 4.154 24 C -0.195 4.195 25 C -0.151 4.151 26 C 0.115 3.885 27 H 0.060 0.940 28 H 0.093 0.907 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.031 0.969 41 H 0.019 0.981 42 H -0.043 1.043 43 H 0.261 0.739 44 H 0.096 0.904 45 H 0.018 0.982 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.105 0.895 50 H 0.109 0.891 51 H 0.096 0.904 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 17.308 -15.344 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.236 4.236 5 O -0.283 6.283 6 C 0.423 3.577 7 O -0.489 6.489 8 N -0.379 5.379 9 C 0.016 3.984 10 C -0.119 4.119 11 C -0.052 4.052 12 N -0.262 5.262 13 C 0.083 3.917 14 C -0.551 4.551 15 H 0.080 0.920 16 C -0.196 4.196 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.187 1.187 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.042 4.042 23 C -0.173 4.173 24 C -0.232 4.232 25 C -0.188 4.188 26 C -0.007 4.007 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.037 0.963 42 H -0.025 1.025 43 H 0.070 0.930 44 H 0.114 0.886 45 H 0.037 0.963 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.123 0.877 50 H 0.128 0.872 51 H 0.114 0.886 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.520 17.087 -15.984 23.831 hybrid contribution -0.555 -1.045 1.063 1.590 sum -5.075 16.042 -14.921 22.489 Atomic orbital electron populations 1.22460 0.93988 1.03482 1.03614 1.22467 0.94655 0.92828 0.81542 1.21877 1.02409 0.90478 1.04356 1.22469 1.01569 1.02103 0.97463 1.86328 1.71765 1.22760 1.47408 1.17730 0.77866 0.80559 0.81567 1.90868 1.42687 1.71114 1.44259 1.48965 1.53636 1.14848 1.20439 1.23334 0.98175 0.80720 0.96168 1.23022 0.98180 0.94833 0.95899 1.21871 0.89569 1.01132 0.92663 1.62038 1.28319 1.09302 1.26567 1.19376 0.93828 0.92774 0.85753 1.21548 1.47651 0.92692 0.93228 0.91969 1.25809 0.95473 1.03440 0.94853 1.70090 1.51773 1.36125 0.99612 0.85472 0.77426 0.79923 0.78630 1.18671 1.20929 1.20793 1.21796 0.93085 0.89346 0.99960 1.22189 0.97720 0.97276 1.00109 1.22977 1.03053 1.05662 0.91480 1.23027 1.02392 0.93323 1.00056 1.23640 0.93742 0.97261 0.86035 0.92093 0.88805 0.92279 0.91279 0.87726 0.91283 0.92260 0.88826 0.92095 0.89362 0.88184 0.87389 0.91125 0.95039 0.96330 1.02507 0.93022 0.88611 0.96334 0.89372 0.89676 0.89931 0.87713 0.87237 0.88638 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 8.37 71.98 0.60 -2.77 16 2 C 0.12 2.36 1.13 -10.79 -0.01 2.35 16 3 C -0.13 -1.69 8.85 71.98 0.64 -1.06 16 4 C -0.18 -3.44 8.37 71.98 0.60 -2.83 16 5 O -0.37 -9.35 9.87 -55.50 -0.55 -9.90 16 6 C 0.67 19.30 8.22 129.79 1.07 20.36 16 7 O -0.60 -19.78 12.61 19.82 0.25 -19.53 16 8 N -0.64 -16.50 3.61 -966.55 -3.49 -19.99 16 9 C 0.14 3.26 8.41 86.49 0.73 3.99 16 10 C -0.10 -2.51 3.68 -10.14 -0.04 -2.55 16 11 C 0.08 2.48 4.71 86.31 0.41 2.89 16 12 N -0.54 -20.80 4.44 -900.78 -4.00 -24.80 16 13 C 0.21 10.47 4.62 85.56 0.40 10.86 16 14 C -0.51 -27.92 8.60 25.60 0.22 -27.70 16 15 H 0.06 3.33 7.65 -2.91 -0.02 3.30 16 16 C 0.00 0.10 5.46 84.65 0.46 0.56 16 17 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 18 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 19 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 C 0.09 2.71 4.88 86.30 0.42 3.14 16 23 C -0.15 -4.95 4.56 -10.80 -0.05 -4.99 16 24 C -0.19 -5.96 9.92 30.59 0.30 -5.66 16 25 C -0.15 -3.60 10.25 30.59 0.31 -3.29 16 26 C 0.11 2.54 6.52 86.43 0.56 3.11 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.49 5.88 -2.39 -0.01 1.47 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 37 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 38 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 39 H 0.07 2.58 7.31 -2.39 -0.02 2.56 16 40 H 0.03 0.99 7.86 -2.39 -0.02 0.97 16 41 H 0.02 1.01 6.53 -2.39 -0.02 1.00 16 42 H -0.04 -2.35 8.00 -2.39 -0.02 -2.37 16 43 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 44 H 0.10 2.44 4.83 -2.39 -0.01 2.43 16 45 H 0.02 0.60 7.87 -2.39 -0.02 0.58 16 46 H 0.09 3.25 8.14 -2.38 -0.02 3.24 16 47 H 0.08 2.63 8.03 -2.39 -0.02 2.61 16 48 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 49 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.10 1.95 7.92 -2.39 -0.02 1.93 16 52 H 0.10 1.94 7.35 -2.39 -0.02 1.93 16 Total: -1.00 -67.73 408.61 2.01 -65.72 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.87 Total: 21.40 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 6.62 Total: -3.60 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -7.21 Total: -99.87 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.30 Total: -29.43 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -67.73 2.01 -65.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779479747.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.264 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds