Wall clock time and date at job start Tue Mar 31 2020 15:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47052 * 240.00297 * 2 1 3 5 5 O 1.45202 * 109.47364 * 119.99922 * 2 1 3 6 6 C 1.34634 * 116.99532 * 63.01271 * 5 2 1 7 7 O 1.21509 * 120.00220 * 354.65165 * 6 5 2 8 8 N 1.34780 * 119.99752 * 174.66101 * 6 5 2 9 9 C 1.46496 * 120.00080 * 184.80459 * 8 6 5 10 10 C 1.49725 * 107.87609 * 73.96370 * 9 8 6 11 11 C 1.56000 * 103.98927 * 77.77554 * 10 9 8 12 12 C 1.57055 * 106.04318 * 7.39846 * 11 10 9 13 13 C 1.51566 * 101.48449 * 24.65196 * 12 11 10 14 14 H 1.09003 * 111.11016 * 72.45106 * 13 12 11 15 15 C 1.51530 * 123.30018 * 208.15149 * 13 12 11 16 16 N 1.50029 * 102.46361 * 152.44691 * 15 13 12 17 17 C 1.46900 * 110.99738 * 212.66137 * 16 15 13 18 18 C 1.53003 * 109.47133 * 176.84064 * 17 16 15 19 19 C 1.50701 * 109.47333 * 181.50089 * 18 17 16 20 20 H 1.08007 * 119.99639 * 5.00148 * 19 18 17 21 21 C 1.37870 * 120.00227 * 184.99935 * 19 18 17 22 22 N 1.31513 * 120.00220 * 184.98968 * 21 19 18 23 23 Si 1.86805 * 119.99767 * 4.98638 * 21 19 18 24 24 H 1.48499 * 109.47171 * 94.90052 * 23 21 19 25 25 H 1.48500 * 109.47243 * 214.89622 * 23 21 19 26 26 H 1.48495 * 109.47328 * 334.89933 * 23 21 19 27 27 C 1.49688 * 107.72502 * 334.37494 * 16 15 13 28 28 H 1.09008 * 109.47129 * 304.68059 * 1 2 3 29 29 H 1.08997 * 109.47277 * 64.68059 * 1 2 3 30 30 H 1.09001 * 109.46817 * 184.68531 * 1 2 3 31 31 H 1.08996 * 109.47501 * 184.96022 * 3 2 1 32 32 H 1.09002 * 109.46634 * 304.96206 * 3 2 1 33 33 H 1.09009 * 109.46978 * 64.95614 * 3 2 1 34 34 H 1.09003 * 109.47164 * 299.99501 * 4 2 1 35 35 H 1.08997 * 109.47124 * 59.99844 * 4 2 1 36 36 H 1.09002 * 109.47230 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99571 * 4.80314 * 8 6 5 38 38 H 1.09002 * 110.52903 * 196.40536 * 10 9 8 39 39 H 1.09004 * 110.51925 * 319.15016 * 10 9 8 40 40 H 1.08996 * 110.18411 * 126.01848 * 11 10 9 41 41 H 1.09000 * 110.18628 * 247.85709 * 11 10 9 42 42 H 1.09007 * 110.28455 * 266.99001 * 12 11 10 43 43 H 1.08996 * 111.94332 * 143.04152 * 12 11 10 44 44 H 1.09004 * 110.80898 * 270.69049 * 15 13 12 45 45 H 1.09003 * 110.80742 * 34.00517 * 15 13 12 46 46 H 1.09006 * 109.47187 * 296.83994 * 17 16 15 47 47 H 1.09001 * 109.47441 * 56.83992 * 17 16 15 48 48 H 1.09002 * 109.46835 * 301.50104 * 18 17 16 49 49 H 1.08996 * 109.46906 * 61.50011 * 18 17 16 50 50 H 0.97000 * 119.99907 * 180.02562 * 22 21 19 51 51 H 1.09008 * 110.40274 * 112.39387 * 27 16 15 52 52 H 1.09006 * 110.40177 * 234.69002 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.7045 -1.9891 1.3072 7 8 0.9678 -2.5168 0.4978 8 7 2.2118 -2.7097 2.3270 9 6 1.9613 -4.1512 2.4011 10 6 2.8073 -4.8188 1.3617 11 6 4.2332 -4.8418 1.9938 12 6 4.0610 -4.3389 3.4717 13 6 2.6088 -4.6804 3.7393 14 1 2.4730 -5.7559 3.8533 15 6 1.7403 -3.9139 4.7163 16 7 0.3646 -4.1130 4.1518 17 6 -0.4823 -2.9392 4.4029 18 6 -1.8486 -3.1464 3.7462 19 6 -2.7048 -1.9269 3.9723 20 1 -2.2878 -1.0569 4.4579 21 6 -4.0202 -1.9219 3.5594 22 7 -4.7391 -0.8259 3.6672 23 14 -4.7813 -3.4719 2.8467 24 1 -5.4891 -4.2145 3.9203 25 1 -5.7468 -3.1039 1.7802 26 1 -3.7132 -4.3293 2.2732 27 6 0.5069 -4.3676 2.6836 28 1 -0.3634 0.5848 0.8451 29 1 -0.3634 0.4395 -0.9289 30 1 -0.3633 -1.0243 0.0839 31 1 3.1264 1.4439 -0.0889 32 1 1.6059 1.9813 -0.8422 33 1 1.7510 1.9301 0.9311 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.7428 -2.2739 3.0118 38 1 2.4550 -5.8335 1.1761 39 1 2.8076 -4.2385 0.4389 40 1 4.6275 -5.8579 1.9955 41 1 4.9002 -4.1798 1.4416 42 1 4.2249 -3.2626 3.5261 43 1 4.7194 -4.8673 4.1611 44 1 1.8138 -4.3403 5.7168 45 1 2.0088 -2.8575 4.7267 46 1 -0.6117 -2.8077 5.4772 47 1 -0.0080 -2.0523 3.9828 48 1 -1.7170 -3.3045 2.6758 49 1 -2.3343 -4.0178 4.1852 50 1 -5.6646 -0.8225 3.3770 51 1 0.2221 -5.3927 2.4464 52 1 -0.1013 -3.6639 2.1152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856813514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:17 Heat of formation + Delta-G solvation = -55.181305 kcal Electronic energy + Delta-G solvation = -30784.902244 eV Core-core repulsion = 26978.229336 eV Total energy + Delta-G solvation = -3806.672908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.63777 -39.96670 -36.68921 -35.98078 -34.09895 -33.03437 -32.79367 -30.97623 -29.90864 -27.79858 -27.38491 -27.17154 -26.19908 -24.28702 -22.89316 -21.63545 -20.27669 -20.04440 -19.84542 -19.01753 -18.16835 -16.85317 -16.39875 -15.98820 -15.83026 -15.20276 -15.11633 -14.84275 -14.30941 -14.14050 -14.10040 -13.56337 -13.49432 -13.33932 -12.92883 -12.54929 -12.44346 -12.40626 -12.20789 -11.98270 -11.87226 -11.68653 -11.48801 -11.45983 -11.43703 -11.30700 -11.15936 -11.13282 -11.05093 -10.78875 -10.71005 -10.27368 -10.17563 -9.96169 -9.78386 -9.68608 -9.66002 -9.17269 -9.10642 -8.44995 -7.82940 -5.99913 -3.96763 2.32503 3.09843 3.36692 3.44071 3.51691 3.80945 4.17625 4.25403 4.51968 4.60217 4.77710 4.81047 4.84350 4.97393 5.01015 5.06640 5.17207 5.27231 5.35543 5.47168 5.48004 5.58483 5.60871 5.64541 5.70008 5.72838 5.74049 5.80146 5.85824 5.89564 5.96074 6.00568 6.02638 6.10231 6.11459 6.14080 6.23454 6.32712 6.34167 6.41323 6.58522 6.68154 6.73155 6.79727 7.14562 7.23878 7.53370 7.58530 7.62614 7.88923 8.57731 8.60874 9.04267 9.63723 11.13411 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005693 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.112757 B = 4916.960050 C = 6901.750616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.368 6.368 6 C 0.653 3.347 7 O -0.559 6.559 8 N -0.706 5.706 9 C 0.162 3.838 10 C -0.112 4.112 11 C -0.117 4.117 12 C -0.110 4.110 13 C -0.121 4.121 14 H 0.101 0.899 15 C 0.047 3.953 16 N -0.521 5.521 17 C 0.066 3.934 18 C -0.007 4.007 19 C -0.518 4.518 20 H 0.069 0.931 21 C 0.069 3.931 22 N -0.903 5.903 23 Si 0.878 3.122 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.263 1.263 27 C 0.039 3.961 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.399 0.601 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.047 0.953 46 H 0.066 0.934 47 H 0.025 0.975 48 H 0.016 0.984 49 H 0.019 0.981 50 H 0.262 0.738 51 H 0.082 0.918 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.102 -3.878 -5.753 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.102 3.898 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.284 6.284 6 C 0.407 3.593 7 O -0.448 6.448 8 N -0.368 5.368 9 C 0.076 3.924 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.140 4.140 14 H 0.120 0.880 15 C -0.080 4.080 16 N -0.245 5.245 17 C -0.061 4.061 18 C -0.045 4.045 19 C -0.556 4.556 20 H 0.087 0.913 21 C -0.132 4.132 22 N -0.542 5.542 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.089 4.089 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.236 0.764 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.043 0.957 48 H 0.035 0.965 49 H 0.038 0.962 50 H 0.072 0.928 51 H 0.100 0.900 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 20.268 -4.408 -5.982 21.587 hybrid contribution -0.050 0.339 -0.447 0.563 sum 20.218 -4.068 -6.428 21.602 Atomic orbital electron populations 1.22502 0.93205 1.05808 1.02555 1.22031 0.94875 0.91170 0.81755 1.21855 1.01530 0.92977 1.03324 1.22516 1.00897 1.03731 0.96756 1.86266 1.73576 1.22397 1.46116 1.18034 0.79051 0.80352 0.81892 1.90895 1.38309 1.71611 1.43939 1.45289 1.56865 1.08175 1.26512 1.21315 0.96476 0.77794 0.96776 1.21703 0.94133 1.01156 0.98071 1.23045 0.96546 1.01178 0.94750 1.22082 0.95219 1.01058 0.96482 1.22897 0.94549 1.01930 0.94630 0.88031 1.22569 0.89028 0.98092 0.98330 1.65324 1.09278 1.39464 1.10424 1.22251 0.94592 0.88777 1.00530 1.19632 0.91728 0.97525 0.95580 1.21030 0.95488 0.99862 1.39268 0.91321 1.24963 0.97161 0.95956 0.95089 1.69925 1.08875 1.27046 1.48395 0.86793 0.79348 0.84224 0.79108 1.20378 1.21479 1.18729 1.22481 0.93098 1.03358 0.89961 0.91619 0.91557 0.89003 0.91962 0.90277 0.91289 0.89323 0.91303 0.92669 0.76439 0.90309 0.90619 0.91468 0.91761 0.91545 0.90802 0.90061 0.93505 0.91513 0.95709 0.96541 0.96244 0.92837 0.90016 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.93 8.48 37.16 0.31 -2.62 16 2 C 0.14 1.91 1.13 -90.62 -0.10 1.81 16 3 C -0.14 -1.51 8.85 37.16 0.33 -1.18 16 4 C -0.18 -2.25 8.32 37.16 0.31 -1.94 16 5 O -0.37 -5.72 9.94 -40.31 -0.40 -6.12 16 6 C 0.65 10.63 7.11 54.06 0.38 11.02 16 7 O -0.56 -10.32 9.86 -19.28 -0.19 -10.51 16 8 N -0.71 -9.71 3.71 -53.05 -0.20 -9.90 16 9 C 0.16 2.13 0.73 -132.43 -0.10 2.03 16 10 C -0.11 -1.25 6.16 -26.75 -0.16 -1.42 16 11 C -0.12 -1.02 6.87 -22.93 -0.16 -1.17 16 12 C -0.11 -0.94 6.40 -25.26 -0.16 -1.10 16 13 C -0.12 -1.31 2.94 -89.46 -0.26 -1.58 16 14 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.05 0.63 6.15 -2.81 -0.02 0.61 16 16 N -0.52 -9.04 5.38 -232.30 -1.25 -10.29 16 17 C 0.07 1.39 4.82 -3.82 -0.02 1.37 16 18 C -0.01 -0.18 3.81 -27.88 -0.11 -0.28 16 19 C -0.52 -15.25 9.65 -34.44 -0.33 -15.59 16 20 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 21 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 23 Si 0.88 22.72 27.42 -169.99 -4.66 18.06 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.26 -6.65 6.65 56.52 0.38 -6.28 16 27 C 0.04 0.66 5.50 -3.89 -0.02 0.64 16 28 H 0.06 1.13 8.14 -51.92 -0.42 0.70 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.76 5.83 -51.93 -0.30 1.46 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.09 1.30 5.85 -51.93 -0.30 0.99 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.89 5.79 -40.82 -0.24 4.65 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.97 7.09 -51.93 -0.37 0.60 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.62 6.46 -51.93 -0.34 0.28 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 47 H 0.02 0.54 8.05 -51.93 -0.42 0.12 16 48 H 0.02 0.43 5.75 -51.93 -0.30 0.13 16 49 H 0.02 0.49 7.14 -51.93 -0.37 0.12 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 51 H 0.08 1.34 8.14 -51.92 -0.42 0.91 16 52 H 0.10 2.00 4.12 -51.93 -0.21 1.78 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -32.70 384.61 -9.44 -42.14 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -9.11 Total: 5.94 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.20 Total: -7.41 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.67 Total: -47.90 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.59 Total: -16.63 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.66 Total: 18.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.70 -9.44 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856813514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.042 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds