Wall clock time and date at job start Tue Mar 31 2020 15:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47236 * 2 1 4 4 C 1.52997 * 109.47052 * 240.00297 * 2 1 3 5 5 O 1.45202 * 109.47364 * 119.99922 * 2 1 3 6 6 C 1.34634 * 116.99532 * 63.01271 * 5 2 1 7 7 O 1.21509 * 120.00220 * 354.65165 * 6 5 2 8 8 N 1.34780 * 119.99752 * 174.66101 * 6 5 2 9 9 C 1.46496 * 120.00080 * 184.80459 * 8 6 5 10 10 C 1.49725 * 107.87609 * 73.96370 * 9 8 6 11 11 C 1.56000 * 103.98927 * 77.77554 * 10 9 8 12 12 C 1.57055 * 106.04318 * 7.39846 * 11 10 9 13 13 C 1.51566 * 101.48449 * 24.65196 * 12 11 10 14 14 H 1.09003 * 111.11016 * 72.45106 * 13 12 11 15 15 C 1.51530 * 123.30018 * 208.15149 * 13 12 11 16 16 N 1.50029 * 102.46361 * 152.44691 * 15 13 12 17 17 C 1.46900 * 110.99738 * 212.66137 * 16 15 13 18 18 C 1.53003 * 109.47133 * 176.84064 * 17 16 15 19 19 C 1.50701 * 109.47333 * 181.50089 * 18 17 16 20 20 H 1.08007 * 119.99639 * 5.00148 * 19 18 17 21 21 C 1.37870 * 120.00227 * 184.99935 * 19 18 17 22 22 N 1.31513 * 120.00220 * 184.98968 * 21 19 18 23 23 Si 1.86805 * 119.99767 * 4.98638 * 21 19 18 24 24 H 1.48499 * 109.47171 * 94.90052 * 23 21 19 25 25 H 1.48500 * 109.47243 * 214.89622 * 23 21 19 26 26 H 1.48495 * 109.47328 * 334.89933 * 23 21 19 27 27 C 1.49688 * 107.72502 * 334.37494 * 16 15 13 28 28 H 1.09008 * 109.47129 * 304.68059 * 1 2 3 29 29 H 1.08997 * 109.47277 * 64.68059 * 1 2 3 30 30 H 1.09001 * 109.46817 * 184.68531 * 1 2 3 31 31 H 1.08996 * 109.47501 * 184.96022 * 3 2 1 32 32 H 1.09002 * 109.46634 * 304.96206 * 3 2 1 33 33 H 1.09009 * 109.46978 * 64.95614 * 3 2 1 34 34 H 1.09003 * 109.47164 * 299.99501 * 4 2 1 35 35 H 1.08997 * 109.47124 * 59.99844 * 4 2 1 36 36 H 1.09002 * 109.47230 * 179.97438 * 4 2 1 37 37 H 0.97001 * 119.99571 * 4.80314 * 8 6 5 38 38 H 1.09002 * 110.52903 * 196.40536 * 10 9 8 39 39 H 1.09004 * 110.51925 * 319.15016 * 10 9 8 40 40 H 1.08996 * 110.18411 * 126.01848 * 11 10 9 41 41 H 1.09000 * 110.18628 * 247.85709 * 11 10 9 42 42 H 1.09007 * 110.28455 * 266.99001 * 12 11 10 43 43 H 1.08996 * 111.94332 * 143.04152 * 12 11 10 44 44 H 1.09004 * 110.80898 * 270.69049 * 15 13 12 45 45 H 1.09003 * 110.80742 * 34.00517 * 15 13 12 46 46 H 1.09006 * 109.47187 * 296.83994 * 17 16 15 47 47 H 1.09001 * 109.47441 * 56.83992 * 17 16 15 48 48 H 1.09002 * 109.46835 * 301.50104 * 18 17 16 49 49 H 1.08996 * 109.46906 * 61.50011 * 18 17 16 50 50 H 0.97000 * 119.99907 * 180.02562 * 22 21 19 51 51 H 1.09008 * 110.40274 * 112.39387 * 27 16 15 52 52 H 1.09006 * 110.40177 * 234.69002 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.7045 -1.9891 1.3072 7 8 0.9678 -2.5168 0.4978 8 7 2.2118 -2.7097 2.3270 9 6 1.9613 -4.1512 2.4011 10 6 2.8073 -4.8188 1.3617 11 6 4.2332 -4.8418 1.9938 12 6 4.0610 -4.3389 3.4717 13 6 2.6088 -4.6804 3.7393 14 1 2.4730 -5.7559 3.8533 15 6 1.7403 -3.9139 4.7163 16 7 0.3646 -4.1130 4.1518 17 6 -0.4823 -2.9392 4.4029 18 6 -1.8486 -3.1464 3.7462 19 6 -2.7048 -1.9269 3.9723 20 1 -2.2878 -1.0569 4.4579 21 6 -4.0202 -1.9219 3.5594 22 7 -4.7391 -0.8259 3.6672 23 14 -4.7813 -3.4719 2.8467 24 1 -5.4891 -4.2145 3.9203 25 1 -5.7468 -3.1039 1.7802 26 1 -3.7132 -4.3293 2.2732 27 6 0.5069 -4.3676 2.6836 28 1 -0.3634 0.5848 0.8451 29 1 -0.3634 0.4395 -0.9289 30 1 -0.3633 -1.0243 0.0839 31 1 3.1264 1.4439 -0.0889 32 1 1.6059 1.9813 -0.8422 33 1 1.7510 1.9301 0.9311 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1392 36 1 3.1300 -0.7208 -1.2495 37 1 2.7428 -2.2739 3.0118 38 1 2.4550 -5.8335 1.1761 39 1 2.8076 -4.2385 0.4389 40 1 4.6275 -5.8579 1.9955 41 1 4.9002 -4.1798 1.4416 42 1 4.2249 -3.2626 3.5261 43 1 4.7194 -4.8673 4.1611 44 1 1.8138 -4.3403 5.7168 45 1 2.0088 -2.8575 4.7267 46 1 -0.6117 -2.8077 5.4772 47 1 -0.0080 -2.0523 3.9828 48 1 -1.7170 -3.3045 2.6758 49 1 -2.3343 -4.0178 4.1852 50 1 -5.6646 -0.8225 3.3770 51 1 0.2221 -5.3927 2.4464 52 1 -0.1013 -3.6639 2.1152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856813514.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:16 Heat of formation + Delta-G solvation = -77.638308 kcal Electronic energy + Delta-G solvation = -30785.876053 eV Core-core repulsion = 26978.229336 eV Total energy + Delta-G solvation = -3807.646716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.75718 -41.13646 -37.94078 -37.31368 -35.27624 -35.09407 -33.90284 -32.74202 -31.03563 -29.31378 -28.38977 -28.31666 -27.24703 -25.96257 -24.15206 -23.08660 -21.55608 -21.31471 -20.85600 -20.27445 -19.34563 -19.06484 -17.64206 -17.20341 -17.03289 -16.51253 -16.18900 -16.13555 -15.95831 -15.52205 -15.23104 -15.06085 -14.88268 -14.62779 -14.44912 -14.12710 -13.54559 -13.46184 -13.35721 -13.24826 -13.10369 -12.94198 -12.88901 -12.86420 -12.62280 -12.49669 -12.32100 -12.26606 -12.19094 -12.10998 -11.92791 -11.82407 -11.50122 -11.48359 -11.43137 -11.35551 -11.18580 -10.89893 -10.77826 -10.33645 -9.24170 -8.35962 -6.38767 1.20118 1.28776 1.30448 1.44571 1.83874 2.30763 2.84477 2.92562 2.99698 3.12884 3.73354 3.75011 3.78119 3.82867 3.92780 3.98923 4.21841 4.27432 4.31274 4.37161 4.42886 4.50669 4.55283 4.58239 4.65416 4.71982 4.72945 4.73352 4.80434 4.83038 4.85509 4.86588 4.91041 4.98192 5.07906 5.08323 5.10057 5.18405 5.20345 5.26061 5.27082 5.33921 5.42250 5.45746 5.48645 5.54208 5.62928 5.87611 6.06957 6.22587 6.41484 6.66658 7.25538 7.39687 8.80740 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.005693 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2955.112757 B = 4916.960050 C = 6901.750616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.130 3.870 3 C -0.134 4.134 4 C -0.173 4.173 5 O -0.375 6.375 6 C 0.645 3.355 7 O -0.586 6.586 8 N -0.695 5.695 9 C 0.153 3.847 10 C -0.110 4.110 11 C -0.108 4.108 12 C -0.102 4.102 13 C -0.100 4.100 14 H 0.114 0.886 15 C 0.045 3.955 16 N -0.525 5.525 17 C 0.084 3.916 18 C 0.003 3.997 19 C -0.531 4.531 20 H 0.030 0.970 21 C 0.013 3.987 22 N -0.945 5.945 23 Si 0.946 3.054 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.257 1.257 27 C 0.037 3.963 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.406 0.594 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.007 0.993 48 H 0.005 0.995 49 H 0.020 0.980 50 H 0.267 0.733 51 H 0.086 0.914 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.805 -5.662 -5.988 25.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.093 3.907 3 C -0.191 4.191 4 C -0.230 4.230 5 O -0.290 6.290 6 C 0.398 3.602 7 O -0.476 6.476 8 N -0.358 5.358 9 C 0.068 3.932 10 C -0.149 4.149 11 C -0.145 4.145 12 C -0.140 4.140 13 C -0.119 4.119 14 H 0.132 0.868 15 C -0.082 4.082 16 N -0.249 5.249 17 C -0.045 4.045 18 C -0.034 4.034 19 C -0.569 4.569 20 H 0.049 0.951 21 C -0.185 4.185 22 N -0.585 5.585 23 Si 0.769 3.231 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.181 1.181 27 C -0.091 4.091 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.245 0.755 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.023 0.977 49 H 0.039 0.961 50 H 0.076 0.924 51 H 0.104 0.896 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.006 -6.192 -6.192 24.616 hybrid contribution -0.929 0.975 -0.361 1.394 sum 22.077 -5.218 -6.553 23.612 Atomic orbital electron populations 1.22456 0.95563 1.03019 1.02738 1.22328 0.93193 0.93129 0.82026 1.21875 1.02802 0.90563 1.03827 1.22422 1.01794 1.02089 0.96685 1.86272 1.73512 1.22124 1.47131 1.18319 0.78994 0.80616 0.82232 1.90883 1.39463 1.72149 1.45119 1.45282 1.56202 1.08426 1.25848 1.21360 0.94578 0.77685 0.99571 1.21715 0.95606 1.00849 0.96721 1.22996 0.94435 1.02687 0.94389 1.22112 0.93486 1.01600 0.96814 1.22884 0.95622 1.02067 0.91345 0.86797 1.22693 0.87036 0.98846 0.99646 1.65277 1.11597 1.37000 1.11022 1.21859 0.93263 0.89752 0.99592 1.19459 0.93432 0.95355 0.95186 1.21310 0.96419 1.00282 1.38886 0.95136 1.25879 0.97669 0.99437 0.95467 1.70056 1.09511 1.29337 1.49638 0.85723 0.78559 0.79965 0.78850 1.18567 1.20640 1.18111 1.22372 0.95302 1.02263 0.89173 0.93910 0.89252 0.92753 0.90052 0.88075 0.92214 0.92002 0.89214 0.91028 0.75515 0.89484 0.92737 0.89296 0.91336 0.91448 0.88091 0.88236 0.93527 0.91637 0.97497 0.97729 0.96145 0.92385 0.89552 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 8.48 71.98 0.61 -5.49 16 2 C 0.13 3.60 1.13 -10.79 -0.01 3.59 16 3 C -0.13 -2.71 8.85 71.98 0.64 -2.07 16 4 C -0.17 -4.16 8.32 71.98 0.60 -3.56 16 5 O -0.38 -11.97 9.94 -55.43 -0.55 -12.52 16 6 C 0.64 21.81 7.11 129.79 0.92 22.73 16 7 O -0.59 -22.96 9.86 19.81 0.20 -22.77 16 8 N -0.69 -19.10 3.71 -552.15 -2.05 -21.15 16 9 C 0.15 3.90 0.73 3.21 0.00 3.90 16 10 C -0.11 -2.29 6.16 30.58 0.19 -2.11 16 11 C -0.11 -1.47 6.87 33.06 0.23 -1.24 16 12 C -0.10 -1.32 6.40 31.55 0.20 -1.12 16 13 C -0.10 -1.88 2.94 -10.04 -0.03 -1.91 16 14 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 15 C 0.04 1.09 6.15 85.21 0.52 1.62 16 16 N -0.53 -18.06 5.38 -888.87 -4.78 -22.84 16 17 C 0.08 3.64 4.82 86.30 0.42 4.05 16 18 C 0.00 0.17 3.81 29.85 0.11 0.29 16 19 C -0.53 -32.76 9.65 25.60 0.25 -32.52 16 20 H 0.03 2.05 7.99 -2.91 -0.02 2.03 16 21 C 0.01 0.80 5.47 84.65 0.46 1.26 16 22 N -0.95 -61.55 13.96 21.44 0.30 -61.25 16 23 Si 0.95 47.73 27.42 68.60 1.88 49.61 16 24 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.26 -12.63 6.65 99.48 0.66 -11.97 16 27 C 0.04 1.27 5.50 84.71 0.47 1.73 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.05 2.25 5.83 -2.39 -0.01 2.24 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.06 1.86 5.85 -2.39 -0.01 1.84 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.41 9.67 5.79 -92.71 -0.54 9.13 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.38 7.09 -2.39 -0.02 1.37 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.90 6.56 -2.38 -0.02 0.88 16 43 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.05 1.16 6.46 -2.39 -0.02 1.15 16 46 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 47 H 0.01 0.31 8.05 -2.39 -0.02 0.29 16 48 H 0.00 0.25 5.75 -2.39 -0.01 0.23 16 49 H 0.02 1.05 7.14 -2.39 -0.02 1.03 16 50 H 0.27 16.17 8.31 -92.71 -0.77 15.40 16 51 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 52 H 0.05 2.31 4.12 -2.38 -0.01 2.30 16 Total: -1.00 -76.13 384.61 0.89 -75.24 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.32 Total: 26.52 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: 5.58 Total: -10.84 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.53 Total: -105.24 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.36 Total: -35.28 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.88 Total: 49.61 kcal Total: -76.13 0.89 -75.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856813514.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.397 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds