Wall clock time and date at job start Tue Mar 31 2020 15:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47141 * 2 1 4 4 C 1.52994 * 109.47427 * 239.99695 * 2 1 3 5 5 O 1.45198 * 109.47012 * 119.99791 * 2 1 3 6 6 C 1.34637 * 117.00255 * 59.99793 * 5 2 1 7 7 O 1.21509 * 119.99797 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99999 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99905 * 180.02562 * 8 6 5 10 10 C 1.53118 * 109.52536 * 85.31156 * 9 8 6 11 11 C 1.53037 * 109.27911 * 177.55900 * 10 9 8 12 12 N 1.46847 * 109.52614 * 300.82256 * 11 10 9 13 13 C 1.46900 * 110.99904 * 185.83860 * 12 11 10 14 14 C 1.52999 * 109.46886 * 73.14019 * 13 12 11 15 15 C 1.50700 * 115.54989 * 291.89352 * 14 13 12 16 16 H 1.07993 * 119.99806 * 142.89338 * 15 14 13 17 17 C 1.37883 * 119.99921 * 322.89519 * 15 14 13 18 18 N 1.31517 * 120.00122 * 336.61633 * 17 15 14 19 19 Si 1.86799 * 119.99925 * 156.61579 * 17 15 14 20 20 H 1.48500 * 109.47072 * 59.99912 * 19 17 15 21 21 H 1.48499 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46993 * 299.99859 * 19 17 15 23 23 C 1.53006 * 117.49446 * 146.22983 * 14 13 12 24 24 C 1.52994 * 117.50193 * 77.56929 * 14 13 12 25 25 C 1.46848 * 111.19523 * 61.74299 * 12 11 10 26 26 C 1.53044 * 109.52303 * 298.25900 * 25 12 11 27 27 H 1.08993 * 109.47647 * 300.00438 * 1 2 3 28 28 H 1.09000 * 109.46992 * 60.00383 * 1 2 3 29 29 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47248 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46829 * 299.99460 * 3 2 1 32 32 H 1.08998 * 109.47654 * 59.99364 * 3 2 1 33 33 H 1.09002 * 109.47343 * 300.00286 * 4 2 1 34 34 H 1.09000 * 109.47098 * 59.99987 * 4 2 1 35 35 H 1.09001 * 109.47489 * 179.97438 * 4 2 1 36 36 H 0.96998 * 120.00287 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.57348 * 325.15884 * 9 8 6 38 38 H 1.08997 * 109.50396 * 297.50428 * 10 9 8 39 39 H 1.09002 * 109.50241 * 57.62339 * 10 9 8 40 40 H 1.09004 * 109.46383 * 180.80470 * 11 10 9 41 41 H 1.09003 * 109.46148 * 60.84285 * 11 10 9 42 42 H 1.09006 * 109.46582 * 193.13657 * 13 12 11 43 43 H 1.08990 * 109.47199 * 313.13260 * 13 12 11 44 44 H 0.96999 * 119.99762 * 185.29944 * 18 17 15 45 45 H 1.08995 * 117.49756 * 359.97438 * 23 14 13 46 46 H 1.08997 * 117.49610 * 145.02097 * 23 14 13 47 47 H 1.08994 * 117.49870 * 214.97542 * 24 14 13 48 48 H 1.09004 * 117.49866 * 359.97083 * 24 14 13 49 49 H 1.08995 * 109.46364 * 178.24393 * 25 12 11 50 50 H 1.08996 * 109.46558 * 58.27270 * 25 12 11 51 51 H 1.09008 * 109.50007 * 299.23699 * 26 25 12 52 52 H 1.08993 * 109.50305 * 179.12246 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3385 7 8 0.9515 -2.5096 0.5037 8 7 2.0671 -2.6653 2.4173 9 6 1.6739 -4.0667 2.5834 10 6 2.6513 -4.9662 1.8217 11 6 2.2716 -6.4312 2.0487 12 7 2.3180 -6.7334 3.4850 13 6 2.0942 -8.1646 3.7293 14 6 3.3363 -8.9537 3.3106 15 6 3.6199 -8.9823 1.8308 16 1 4.6391 -8.9459 1.4756 17 6 2.5781 -9.0551 0.9305 18 7 1.4187 -9.5501 1.3050 19 14 2.8136 -8.4506 -0.8212 20 1 3.9028 -9.2242 -1.4696 21 1 1.5525 -8.6368 -1.5828 22 1 3.1725 -7.0098 -0.8036 23 6 3.6856 -10.2034 4.1212 24 6 4.5362 -8.9383 4.2597 25 6 1.3536 -5.9151 4.2311 26 6 1.7060 -4.4345 4.0693 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 2.6267 -2.2364 3.0835 37 1 0.6663 -4.2119 2.1939 38 1 2.6017 -4.7380 0.7571 39 1 3.6643 -4.7924 2.1849 40 1 2.9742 -7.0748 1.5193 41 1 1.2637 -6.6076 1.6728 42 1 1.9014 -8.3262 4.7899 43 1 1.2361 -8.5025 3.1484 44 1 0.7105 -9.6727 0.6536 45 1 3.0308 -10.4631 4.9530 46 1 4.1210 -11.0461 3.5843 47 1 5.5307 -8.9493 3.8138 48 1 4.4409 -8.3655 5.1822 49 1 1.3895 -6.1836 5.2869 50 1 0.3501 -6.0938 3.8451 51 1 2.7041 -4.2524 4.4679 52 1 0.9809 -3.8267 4.6104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878212025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:13 Heat of formation + Delta-G solvation = -51.200548 kcal Electronic energy + Delta-G solvation = -29566.129289 eV Core-core repulsion = 25759.629000 eV Total energy + Delta-G solvation = -3806.500289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.76988 -38.85207 -37.32193 -36.12456 -34.51885 -33.87324 -32.38263 -30.75796 -30.22597 -27.58375 -27.50112 -25.95574 -25.47930 -23.06177 -22.47981 -21.38540 -20.98289 -20.16429 -19.31992 -18.99792 -17.99888 -16.69134 -16.14699 -16.06981 -15.58805 -14.88933 -14.74609 -14.49799 -14.40066 -14.16515 -13.90491 -13.61785 -13.26431 -13.11142 -12.88714 -12.67717 -12.45134 -12.35240 -12.04484 -12.01318 -11.97179 -11.67346 -11.59232 -11.42954 -11.26992 -10.95199 -10.90299 -10.72469 -10.45942 -10.44750 -10.32846 -10.18673 -10.12156 -10.02872 -9.90110 -9.19978 -9.12609 -8.80301 -8.56733 -8.03359 -7.22100 -6.14666 -4.02168 2.21086 2.93703 3.25358 3.33232 3.37847 4.16069 4.31353 4.56822 4.60527 4.70111 4.75328 4.94557 5.00876 5.26391 5.27757 5.36657 5.43539 5.45169 5.51225 5.59506 5.65510 5.71870 5.72900 5.80073 5.81647 5.91989 6.07022 6.12868 6.15572 6.17609 6.22573 6.29953 6.36418 6.38695 6.51154 6.52693 6.63411 6.69088 6.82758 6.84600 6.92648 7.03688 7.20896 7.36959 7.45654 7.49380 7.53906 7.88774 8.16629 8.21551 8.48138 8.48720 8.86641 9.43372 10.86794 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.003484 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.064694 B = 8034.024151 C = 9031.068260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.369 6.369 6 C 0.647 3.353 7 O -0.567 6.567 8 N -0.704 5.704 9 C 0.160 3.840 10 C -0.127 4.127 11 C 0.040 3.960 12 N -0.523 5.523 13 C 0.088 3.912 14 C 0.064 3.936 15 C -0.494 4.494 16 H 0.062 0.938 17 C 0.082 3.918 18 N -0.863 5.863 19 Si 0.864 3.136 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C -0.205 4.205 24 C -0.197 4.197 25 C 0.057 3.943 26 C -0.117 4.117 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.402 0.598 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.019 0.981 42 H 0.034 0.966 43 H 0.079 0.921 44 H 0.264 0.736 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.025 0.975 51 H 0.076 0.924 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 18.315 1.492 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.284 6.284 6 C 0.400 3.600 7 O -0.456 6.456 8 N -0.362 5.362 9 C 0.058 3.942 10 C -0.166 4.166 11 C -0.088 4.088 12 N -0.248 5.248 13 C -0.039 4.039 14 C 0.064 3.936 15 C -0.531 4.531 16 H 0.081 0.919 17 C -0.123 4.123 18 N -0.498 5.498 19 Si 0.690 3.310 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.243 4.243 24 C -0.235 4.235 25 C -0.072 4.072 26 C -0.155 4.155 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.236 0.764 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.154 0.846 41 H 0.038 0.962 42 H 0.053 0.947 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.043 0.957 51 H 0.094 0.906 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.325 18.252 1.138 18.336 hybrid contribution -0.518 0.279 -0.965 1.130 sum -1.843 18.531 0.173 18.623 Atomic orbital electron populations 1.22514 0.94129 1.05182 1.02221 1.22011 0.94277 0.91408 0.82348 1.21850 1.02224 0.92683 1.02923 1.22524 1.01598 1.03739 0.96332 1.86284 1.71755 1.24044 1.46307 1.18145 0.79022 0.80237 0.82579 1.90908 1.41283 1.70362 1.43018 1.44999 1.55172 1.12745 1.23242 1.21211 0.99683 0.76825 0.96527 1.22083 0.99182 0.95804 0.99505 1.22812 1.01850 0.94585 0.89507 1.61862 1.48192 1.06161 1.08566 1.21670 0.99969 0.84983 0.97231 1.18769 0.90510 0.92858 0.91504 1.20394 0.92705 1.51219 0.88758 0.91945 1.24933 0.95215 0.94115 0.97995 1.69971 1.05126 1.40064 1.34659 0.87167 0.77950 0.80706 0.85223 1.20078 1.21042 1.19039 1.22957 1.04732 0.93075 1.03552 1.22737 0.96711 1.02055 1.01984 1.21979 0.94309 0.91993 0.98968 1.21831 1.02583 0.97014 0.94112 0.92317 0.91302 0.89259 0.91509 0.90284 0.91590 0.89178 0.91307 0.92165 0.76352 0.89731 0.92061 0.91225 0.84609 0.96229 0.94705 0.90312 0.92604 0.92101 0.90626 0.91145 0.91452 0.91150 0.95669 0.90556 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.37 37.16 0.31 -1.68 16 2 C 0.14 1.52 1.13 -90.63 -0.10 1.42 16 3 C -0.14 -1.11 8.85 37.15 0.33 -0.78 16 4 C -0.18 -2.13 8.37 37.15 0.31 -1.82 16 5 O -0.37 -4.86 9.94 -40.32 -0.40 -5.26 16 6 C 0.65 9.78 8.03 54.06 0.43 10.21 16 7 O -0.57 -10.07 11.54 -19.28 -0.22 -10.29 16 8 N -0.70 -9.52 5.09 -58.61 -0.30 -9.82 16 9 C 0.16 2.48 2.52 -67.81 -0.17 2.31 16 10 C -0.13 -2.32 5.67 -26.65 -0.15 -2.48 16 11 C 0.04 0.85 4.02 -3.83 -0.02 0.84 16 12 N -0.52 -10.59 4.60 -234.67 -1.08 -11.67 16 13 C 0.09 2.00 4.73 -3.82 -0.02 1.98 16 14 C 0.06 1.55 1.89 -155.66 -0.29 1.25 16 15 C -0.49 -12.90 6.99 -34.44 -0.24 -13.14 16 16 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 17 C 0.08 2.12 3.36 -17.82 -0.06 2.06 16 18 N -0.86 -23.10 11.32 55.43 0.63 -22.47 16 19 Si 0.86 20.31 28.05 -169.99 -4.77 15.54 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.20 -4.64 9.91 -26.69 -0.26 -4.91 16 24 C -0.20 -4.30 9.96 -26.69 -0.27 -4.56 16 25 C 0.06 0.94 5.44 -3.83 -0.02 0.92 16 26 C -0.12 -1.60 5.57 -26.65 -0.15 -1.75 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 1.31 5.88 -51.93 -0.31 1.01 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 4.38 8.72 -40.82 -0.36 4.02 16 37 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.14 3.28 2.66 -51.93 -0.14 3.14 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.03 0.74 7.77 -51.93 -0.40 0.33 16 43 H 0.08 1.99 5.74 -51.93 -0.30 1.70 16 44 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 45 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 50 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 52 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.51 15.07 5.93 5.93 Total: -1.00 -27.95 393.51 -9.93 -37.88 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -9.35 Total: 10.27 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.37 Total: -10.12 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -0.75 Total: -43.95 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.62 Total: -15.55 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.77 Total: 15.54 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.95 -9.93 -37.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878212025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.317 kcal (2) G-P(sol) polarization free energy of solvation -27.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds