Wall clock time and date at job start Tue Mar 31 2020 15:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47141 * 2 1 4 4 C 1.52994 * 109.47427 * 239.99695 * 2 1 3 5 5 O 1.45198 * 109.47012 * 119.99791 * 2 1 3 6 6 C 1.34637 * 117.00255 * 59.99793 * 5 2 1 7 7 O 1.21509 * 119.99797 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99999 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99905 * 180.02562 * 8 6 5 10 10 C 1.53118 * 109.52536 * 85.31156 * 9 8 6 11 11 C 1.53037 * 109.27911 * 177.55900 * 10 9 8 12 12 N 1.46847 * 109.52614 * 300.82256 * 11 10 9 13 13 C 1.46900 * 110.99904 * 185.83860 * 12 11 10 14 14 C 1.52999 * 109.46886 * 73.14019 * 13 12 11 15 15 C 1.50700 * 115.54989 * 291.89352 * 14 13 12 16 16 H 1.07993 * 119.99806 * 142.89338 * 15 14 13 17 17 C 1.37883 * 119.99921 * 322.89519 * 15 14 13 18 18 N 1.31517 * 120.00122 * 336.61633 * 17 15 14 19 19 Si 1.86799 * 119.99925 * 156.61579 * 17 15 14 20 20 H 1.48500 * 109.47072 * 59.99912 * 19 17 15 21 21 H 1.48499 * 109.47172 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46993 * 299.99859 * 19 17 15 23 23 C 1.53006 * 117.49446 * 146.22983 * 14 13 12 24 24 C 1.52994 * 117.50193 * 77.56929 * 14 13 12 25 25 C 1.46848 * 111.19523 * 61.74299 * 12 11 10 26 26 C 1.53044 * 109.52303 * 298.25900 * 25 12 11 27 27 H 1.08993 * 109.47647 * 300.00438 * 1 2 3 28 28 H 1.09000 * 109.46992 * 60.00383 * 1 2 3 29 29 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47248 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46829 * 299.99460 * 3 2 1 32 32 H 1.08998 * 109.47654 * 59.99364 * 3 2 1 33 33 H 1.09002 * 109.47343 * 300.00286 * 4 2 1 34 34 H 1.09000 * 109.47098 * 59.99987 * 4 2 1 35 35 H 1.09001 * 109.47489 * 179.97438 * 4 2 1 36 36 H 0.96998 * 120.00287 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.57348 * 325.15884 * 9 8 6 38 38 H 1.08997 * 109.50396 * 297.50428 * 10 9 8 39 39 H 1.09002 * 109.50241 * 57.62339 * 10 9 8 40 40 H 1.09004 * 109.46383 * 180.80470 * 11 10 9 41 41 H 1.09003 * 109.46148 * 60.84285 * 11 10 9 42 42 H 1.09006 * 109.46582 * 193.13657 * 13 12 11 43 43 H 1.08990 * 109.47199 * 313.13260 * 13 12 11 44 44 H 0.96999 * 119.99762 * 185.29944 * 18 17 15 45 45 H 1.08995 * 117.49756 * 359.97438 * 23 14 13 46 46 H 1.08997 * 117.49610 * 145.02097 * 23 14 13 47 47 H 1.08994 * 117.49870 * 214.97542 * 24 14 13 48 48 H 1.09004 * 117.49866 * 359.97083 * 24 14 13 49 49 H 1.08995 * 109.46364 * 178.24393 * 25 12 11 50 50 H 1.08996 * 109.46558 * 58.27270 * 25 12 11 51 51 H 1.09008 * 109.50007 * 299.23699 * 26 25 12 52 52 H 1.08993 * 109.50305 * 179.12246 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9722 1.3385 7 8 0.9515 -2.5096 0.5037 8 7 2.0671 -2.6653 2.4173 9 6 1.6739 -4.0667 2.5834 10 6 2.6513 -4.9662 1.8217 11 6 2.2716 -6.4312 2.0487 12 7 2.3180 -6.7334 3.4850 13 6 2.0942 -8.1646 3.7293 14 6 3.3363 -8.9537 3.3106 15 6 3.6199 -8.9823 1.8308 16 1 4.6391 -8.9459 1.4756 17 6 2.5781 -9.0551 0.9305 18 7 1.4187 -9.5501 1.3050 19 14 2.8136 -8.4506 -0.8212 20 1 3.9028 -9.2242 -1.4696 21 1 1.5525 -8.6368 -1.5828 22 1 3.1725 -7.0098 -0.8036 23 6 3.6856 -10.2034 4.1212 24 6 4.5362 -8.9383 4.2597 25 6 1.3536 -5.9151 4.2311 26 6 1.7060 -4.4345 4.0693 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 2.6267 -2.2364 3.0835 37 1 0.6663 -4.2119 2.1939 38 1 2.6017 -4.7380 0.7571 39 1 3.6643 -4.7924 2.1849 40 1 2.9742 -7.0748 1.5193 41 1 1.2637 -6.6076 1.6728 42 1 1.9014 -8.3262 4.7899 43 1 1.2361 -8.5025 3.1484 44 1 0.7105 -9.6727 0.6536 45 1 3.0308 -10.4631 4.9530 46 1 4.1210 -11.0461 3.5843 47 1 5.5307 -8.9493 3.8138 48 1 4.4409 -8.3655 5.1822 49 1 1.3895 -6.1836 5.2869 50 1 0.3501 -6.0938 3.8451 51 1 2.7041 -4.2524 4.4679 52 1 0.9809 -3.8267 4.6104 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878212025.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:13 Heat of formation + Delta-G solvation = -68.458030 kcal Electronic energy + Delta-G solvation = -29566.877630 eV Core-core repulsion = 25759.629000 eV Total energy + Delta-G solvation = -3807.248630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.88443 -40.27530 -38.68348 -37.59891 -35.81823 -34.92293 -34.34874 -32.13731 -31.68732 -28.38535 -28.29493 -27.82567 -27.15530 -24.40124 -23.89511 -22.83581 -22.57793 -21.35041 -20.88362 -20.59267 -19.12360 -18.06393 -17.75671 -17.18317 -16.92441 -16.64607 -16.09208 -15.79062 -15.79001 -15.50804 -15.33596 -14.83494 -14.65512 -14.56461 -14.40908 -14.00368 -13.69039 -13.38603 -13.33074 -13.20668 -12.92733 -12.91091 -12.86461 -12.79292 -12.60931 -12.45111 -12.38759 -12.27827 -12.10014 -11.98753 -11.93558 -11.67997 -11.54693 -11.39213 -11.12089 -11.01943 -10.91148 -10.45375 -10.14210 -9.90836 -8.92221 -8.15708 -6.06002 1.14523 1.31407 1.39091 1.42152 1.76086 2.33901 2.92098 3.13398 3.23690 3.70423 3.75081 3.78790 3.84998 3.92812 3.94097 4.16434 4.27034 4.39532 4.47857 4.52293 4.57818 4.59370 4.63300 4.66791 4.74933 4.77720 4.80464 4.82316 4.84407 4.87558 4.95268 4.99358 5.07037 5.09091 5.12189 5.16191 5.20566 5.26846 5.27451 5.32266 5.39752 5.45293 5.55428 5.58524 5.62461 5.68267 5.93184 6.41742 6.47198 6.48914 6.60163 6.87414 7.36838 7.40843 8.83992 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016583 B = 0.003484 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.064694 B = 8034.024151 C = 9031.068260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.183 4.183 5 O -0.365 6.365 6 C 0.644 3.356 7 O -0.598 6.598 8 N -0.691 5.691 9 C 0.171 3.829 10 C -0.118 4.118 11 C 0.048 3.952 12 N -0.521 5.521 13 C 0.097 3.903 14 C 0.036 3.964 15 C -0.505 4.505 16 H 0.049 0.951 17 C 0.060 3.940 18 N -0.884 5.884 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.206 4.206 24 C -0.175 4.175 25 C 0.052 3.948 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.419 0.581 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.109 0.891 41 H -0.010 1.010 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.261 0.739 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.013 0.987 51 H 0.093 0.907 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 21.052 2.987 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.240 4.240 5 O -0.280 6.280 6 C 0.397 3.603 7 O -0.489 6.489 8 N -0.350 5.350 9 C 0.068 3.932 10 C -0.157 4.157 11 C -0.080 4.080 12 N -0.245 5.245 13 C -0.031 4.031 14 C 0.035 3.965 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.143 4.143 18 N -0.520 5.520 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.190 1.190 23 C -0.245 4.245 24 C -0.212 4.212 25 C -0.077 4.077 26 C -0.141 4.141 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.256 0.744 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.127 0.873 41 H 0.008 0.992 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.032 0.968 51 H 0.112 0.888 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.657 21.018 2.651 21.195 hybrid contribution -0.710 -0.567 -1.466 1.724 sum -1.368 20.451 1.185 20.531 Atomic orbital electron populations 1.22467 0.94034 1.03435 1.03735 1.22412 0.94601 0.92865 0.81329 1.21870 1.02439 0.90203 1.04476 1.22493 1.01624 1.02017 0.97864 1.86303 1.71568 1.22817 1.47318 1.18338 0.78694 0.80854 0.82404 1.90914 1.42627 1.71178 1.44168 1.44749 1.55127 1.11831 1.23304 1.20912 0.97469 0.77369 0.97499 1.21948 1.00420 0.94603 0.98777 1.22544 0.99250 0.96016 0.90227 1.61870 1.49452 1.05352 1.07805 1.21467 0.98028 0.86252 0.97341 1.18896 0.92410 0.94357 0.90849 1.20539 0.92061 1.51141 0.90439 0.93273 1.25245 0.95022 0.94042 0.99967 1.70048 1.05573 1.41198 1.35179 0.86590 0.77673 0.80361 0.82881 1.19594 1.21392 1.19016 1.22940 1.05207 0.92729 1.03584 1.22719 0.95716 1.00991 1.01792 1.22154 0.92874 0.93244 0.99413 1.21764 1.04573 0.95192 0.92608 0.91504 0.89099 0.92535 0.91186 0.87982 0.90785 0.92729 0.88995 0.92029 0.74390 0.91993 0.94231 0.90349 0.87297 0.99208 0.93136 0.93538 0.92931 0.90641 0.91848 0.91240 0.89326 0.88944 0.96831 0.88828 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 8.37 71.98 0.60 -3.07 16 2 C 0.12 2.57 1.13 -10.80 -0.01 2.56 16 3 C -0.13 -1.71 8.85 71.98 0.64 -1.08 16 4 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 5 O -0.37 -9.13 9.94 -55.47 -0.55 -9.68 16 6 C 0.64 19.13 8.03 129.79 1.04 20.17 16 7 O -0.60 -21.83 11.54 19.81 0.23 -21.60 16 8 N -0.69 -17.63 5.09 -569.76 -2.90 -20.52 16 9 C 0.17 5.14 2.52 45.07 0.11 5.26 16 10 C -0.12 -4.36 5.67 30.65 0.17 -4.19 16 11 C 0.05 2.09 4.02 86.33 0.35 2.44 16 12 N -0.52 -20.68 4.60 -896.36 -4.13 -24.81 16 13 C 0.10 4.34 4.73 86.30 0.41 4.75 16 14 C 0.04 1.71 1.89 -52.93 -0.10 1.61 16 15 C -0.50 -26.85 6.99 25.60 0.18 -26.67 16 16 H 0.05 2.67 7.92 -2.91 -0.02 2.65 16 17 C 0.06 3.19 3.36 84.66 0.28 3.47 16 18 N -0.88 -48.81 11.32 21.45 0.24 -48.57 16 19 Si 0.90 42.90 28.05 68.60 1.92 44.82 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 23 C -0.21 -9.18 9.91 30.62 0.30 -8.88 16 24 C -0.17 -7.31 9.96 30.62 0.30 -7.00 16 25 C 0.05 1.62 5.44 86.33 0.47 2.09 16 26 C -0.10 -2.52 5.57 30.65 0.17 -2.35 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 1.63 5.88 -2.39 -0.01 1.62 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.42 7.93 8.72 -92.71 -0.81 7.12 16 37 H 0.06 2.18 7.58 -2.39 -0.02 2.16 16 38 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.11 5.40 2.66 -2.38 -0.01 5.39 16 41 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 42 H 0.05 2.06 7.77 -2.38 -0.02 2.04 16 43 H 0.05 2.41 5.74 -2.39 -0.01 2.40 16 44 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 45 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 46 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 48 H 0.09 3.32 8.14 -2.38 -0.02 3.30 16 49 H 0.09 2.51 7.95 -2.39 -0.02 2.49 16 50 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 52 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -63.07 393.51 0.43 -62.64 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.08 Total: 32.11 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.53 Total: -14.39 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -6.78 Total: -93.90 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.32 Total: -31.28 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.92 Total: 44.82 kcal Total: -63.07 0.43 -62.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878212025.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.822 kcal (2) G-P(sol) polarization free energy of solvation -63.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds