Wall clock time and date at job start Tue Mar 31 2020 15:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00053 * 2 1 4 4 C 1.53002 * 109.46600 * 296.46692 * 3 2 1 5 5 C 1.50694 * 115.55154 * 305.14062 * 4 3 2 6 6 H 1.07996 * 119.99997 * 94.17538 * 5 4 3 7 7 C 1.37882 * 120.00319 * 274.17707 * 5 4 3 8 8 N 1.31508 * 119.99619 * 5.73358 * 7 5 4 9 9 Si 1.86796 * 120.00162 * 185.73236 * 7 5 4 10 10 H 1.48495 * 109.47313 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.47293 * 300.00233 * 9 7 5 12 12 H 1.48508 * 109.47036 * 59.99807 * 9 7 5 13 13 C 1.53003 * 117.50061 * 90.81626 * 4 3 2 14 14 C 1.53002 * 117.49601 * 159.47635 * 4 3 2 15 15 C 1.46902 * 110.99783 * 123.94711 * 2 1 3 16 16 C 1.53781 * 113.61031 * 153.54325 * 15 2 1 17 17 C 1.53780 * 87.08470 * 220.02139 * 16 15 2 18 18 N 1.46504 * 113.61288 * 270.88845 * 17 16 15 19 19 C 1.34775 * 119.99879 * 252.49146 * 18 17 16 20 20 O 1.21511 * 119.99991 * 359.97438 * 19 18 17 21 21 O 1.34634 * 120.00102 * 180.02562 * 19 18 17 22 22 C 1.45201 * 117.00186 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.46915 * 59.99604 * 22 21 19 24 24 C 1.53004 * 109.47125 * 179.97438 * 22 21 19 25 25 C 1.52993 * 109.47009 * 299.99676 * 22 21 19 26 26 C 1.53777 * 113.61413 * 56.05203 * 15 2 1 27 27 H 1.09005 * 109.47213 * 65.01835 * 1 2 3 28 28 H 1.09005 * 109.47184 * 185.01768 * 1 2 3 29 29 H 1.09005 * 109.47379 * 305.01763 * 1 2 3 30 30 H 1.09000 * 109.47330 * 176.47010 * 3 2 1 31 31 H 1.08997 * 109.47104 * 56.46222 * 3 2 1 32 32 H 0.97000 * 120.00364 * 355.12035 * 8 7 5 33 33 H 1.08996 * 117.49977 * 215.00110 * 13 4 3 34 34 H 1.09004 * 117.49902 * 0.02562 * 13 4 3 35 35 H 1.09001 * 117.50064 * 359.97083 * 14 4 3 36 36 H 1.08997 * 117.50191 * 144.97609 * 14 4 3 37 37 H 1.09001 * 112.85296 * 284.84935 * 15 2 1 38 38 H 1.09002 * 113.61949 * 334.57032 * 16 15 2 39 39 H 1.09006 * 113.61479 * 105.47410 * 16 15 2 40 40 H 1.08998 * 113.69658 * 139.99076 * 17 16 15 41 41 H 0.97007 * 119.99923 * 72.49887 * 18 17 16 42 42 H 1.09007 * 109.47342 * 60.00392 * 23 22 21 43 43 H 1.08996 * 109.47327 * 179.97438 * 23 22 21 44 44 H 1.09001 * 109.47571 * 299.99873 * 23 22 21 45 45 H 1.08996 * 109.46868 * 60.00020 * 24 22 21 46 46 H 1.09000 * 109.47088 * 179.97438 * 24 22 21 47 47 H 1.09001 * 109.46829 * 300.00195 * 24 22 21 48 48 H 1.09000 * 109.47491 * 59.99671 * 25 22 21 49 49 H 1.09000 * 109.47118 * 180.02562 * 25 22 21 50 50 H 1.09004 * 109.47506 * 299.99897 * 25 22 21 51 51 H 1.09005 * 113.61837 * 254.52850 * 26 15 2 52 52 H 1.09002 * 113.61461 * 25.34061 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5779 2.0779 -1.2914 5 6 1.9568 1.3741 -2.5689 6 1 1.2515 0.7135 -3.0511 7 6 3.2038 1.5737 -3.1223 8 7 4.1020 2.2871 -2.4791 9 14 3.6174 0.8306 -4.7854 10 1 5.0099 1.1897 -5.1556 11 1 3.4893 -0.6471 -4.7131 12 1 2.6814 1.3589 -5.8102 13 6 0.2603 2.8554 -1.2771 14 6 1.5932 3.6078 -1.2963 15 6 1.9953 -0.7659 1.1377 16 6 3.3938 -1.3553 0.8892 17 6 2.9043 -2.6190 1.6160 18 7 3.1209 -2.5839 3.0645 19 6 4.0767 -3.3535 3.6218 20 8 4.7584 -4.0769 2.9229 21 8 4.2754 -3.3216 4.9530 22 6 5.3222 -4.1764 5.4840 23 6 6.6635 -3.7884 4.8586 24 6 5.3994 -4.0051 7.0024 25 6 5.0071 -5.6358 5.1503 26 6 1.4815 -2.2141 1.1960 27 1 -0.3634 0.4340 -0.9316 28 1 -0.3634 -1.0238 0.0899 29 1 -0.3634 0.5897 0.8417 30 1 3.0832 1.3431 0.0633 31 1 1.5956 1.9141 0.8566 32 1 3.8654 2.7317 -1.6501 33 1 -0.3326 2.8578 -2.1917 34 1 -0.3090 2.8640 -0.3476 35 1 1.9002 4.1111 -0.3795 36 1 1.8776 4.1053 -2.2235 37 1 1.9067 -0.2327 2.0843 38 1 3.6183 -1.5174 -0.1651 39 1 4.1895 -0.8290 1.4164 40 1 3.2468 -3.5475 1.1592 41 1 2.5763 -2.0067 3.6225 42 1 6.8881 -2.7485 5.0964 43 1 7.4495 -4.4296 5.2574 44 1 6.6089 -3.9101 3.7768 45 1 4.4439 -4.2813 7.4482 46 1 6.1849 -4.6471 7.4010 47 1 5.6240 -2.9652 7.2398 48 1 4.9524 -5.7576 4.0685 49 1 5.7927 -6.2775 5.5492 50 1 4.0515 -5.9123 5.5958 51 1 0.7332 -2.3811 1.9708 52 1 1.1817 -2.6104 0.2258 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878669443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:00 Heat of formation + Delta-G solvation = -52.027609 kcal Electronic energy + Delta-G solvation = -28744.302050 eV Core-core repulsion = 24937.765897 eV Total energy + Delta-G solvation = -3806.536153 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95652 -40.68648 -39.06499 -37.90987 -35.95805 -35.13538 -33.82309 -33.31650 -28.79677 -28.36342 -28.29169 -27.18451 -26.39572 -26.27614 -24.15084 -23.03564 -22.79688 -21.21796 -21.06302 -20.10433 -19.34150 -18.40535 -17.60633 -17.22514 -16.87912 -16.55457 -16.12590 -15.91650 -15.58263 -15.53329 -15.38758 -14.98792 -14.68613 -14.46627 -14.28686 -13.98102 -13.71758 -13.41798 -13.29904 -13.19118 -12.98040 -12.91023 -12.86380 -12.74964 -12.59601 -12.49571 -12.45340 -12.35405 -12.27557 -12.20171 -11.93409 -11.66671 -11.39858 -11.34149 -11.13280 -11.10816 -10.36257 -10.32722 -10.21401 -10.11573 -8.96540 -8.38391 -6.07240 1.10753 1.57425 1.64388 1.71923 1.82270 2.65949 3.03565 3.11036 3.36798 3.45439 3.52086 3.54578 3.75386 3.79813 3.88407 3.94928 4.07281 4.20741 4.35108 4.38132 4.49347 4.53557 4.58018 4.61645 4.62960 4.67947 4.73264 4.76630 4.82123 4.83772 4.84140 4.87543 4.88344 4.93716 4.97587 5.03052 5.07553 5.10003 5.15452 5.25114 5.28646 5.33514 5.44712 5.47482 5.56433 5.62021 6.22087 6.37481 6.38643 6.47505 6.49783 6.88634 7.32344 7.69498 9.02588 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.002744 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.647937 B =10202.647336 C =10832.019056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.521 5.521 3 C 0.116 3.884 4 C 0.011 3.989 5 C -0.541 4.541 6 H 0.038 0.962 7 C -0.022 4.022 8 N -0.942 5.942 9 Si 1.103 2.897 10 H -0.292 1.292 11 H -0.277 1.277 12 H -0.277 1.277 13 C -0.172 4.172 14 C -0.190 4.190 15 C 0.052 3.948 16 C -0.138 4.138 17 C 0.148 3.852 18 N -0.682 5.682 19 C 0.648 3.352 20 O -0.592 6.592 21 O -0.368 6.368 22 C 0.124 3.876 23 C -0.182 4.182 24 C -0.135 4.135 25 C -0.179 4.179 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.021 0.979 30 H 0.035 0.965 31 H 0.011 0.989 32 H 0.263 0.737 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.416 0.584 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.060 0.940 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 -13.166 19.092 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.244 5.244 3 C -0.012 4.012 4 C 0.010 3.990 5 C -0.579 4.579 6 H 0.057 0.943 7 C -0.221 4.221 8 N -0.580 5.580 9 Si 0.928 3.072 10 H -0.218 1.218 11 H -0.202 1.202 12 H -0.202 1.202 13 C -0.209 4.209 14 C -0.229 4.229 15 C -0.057 4.057 16 C -0.178 4.178 17 C 0.043 3.957 18 N -0.341 5.341 19 C 0.402 3.598 20 O -0.483 6.483 21 O -0.283 6.283 22 C 0.088 3.912 23 C -0.240 4.240 24 C -0.192 4.192 25 C -0.236 4.236 26 C -0.148 4.148 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.039 0.961 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.119 0.881 41 H 0.252 0.748 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.121 0.879 47 H 0.086 0.914 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.084 0.916 51 H 0.117 0.883 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.164 -13.983 17.299 22.274 hybrid contribution -1.283 1.451 1.640 2.538 sum -2.447 -12.532 18.939 22.841 Atomic orbital electron populations 1.22291 0.86967 1.01713 1.00198 1.61912 1.08135 1.13420 1.40921 1.21380 0.97309 0.88191 0.94325 1.19145 0.96384 0.88921 0.94565 1.21268 1.01754 1.28102 1.06817 0.94334 1.26743 0.92986 0.96776 1.05585 1.70830 1.35538 1.32978 1.18682 0.83097 0.75562 0.76077 0.72511 1.21800 1.20222 1.20239 1.22898 0.90455 1.06606 1.00937 1.22708 1.02710 0.97508 0.99927 1.23268 0.95977 0.94280 0.92137 1.23412 0.96699 0.96888 1.00796 1.21586 0.97741 0.98643 0.77716 1.44352 1.36657 1.45201 1.07869 1.18226 0.80483 0.79749 0.81351 1.90901 1.49750 1.44263 1.63337 1.86308 1.56355 1.64689 1.20944 1.22431 0.84483 0.89075 0.95206 1.22495 0.96613 1.02364 1.02497 1.21885 1.04237 1.03875 0.89192 1.22467 1.03196 0.94548 1.03401 1.23295 0.94939 0.93160 1.03433 0.92660 0.90039 0.96095 0.94675 0.97125 0.92681 0.90625 0.89243 0.90502 0.92334 0.91736 0.90207 0.93146 0.88112 0.74763 0.92321 0.88910 0.92266 0.90891 0.87881 0.91427 0.92076 0.89044 0.91613 0.88332 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 8.82 127.69 1.13 2.26 16 2 N -0.52 -19.20 4.43 -893.93 -3.96 -23.16 16 3 C 0.12 5.00 4.81 86.30 0.42 5.42 16 4 C 0.01 0.50 0.46 -52.93 -0.02 0.48 16 5 C -0.54 -29.48 8.53 25.60 0.22 -29.26 16 6 H 0.04 2.15 7.82 -2.91 -0.02 2.12 16 7 C -0.02 -1.26 5.39 84.66 0.46 -0.81 16 8 N -0.94 -56.80 13.56 21.45 0.29 -56.51 16 9 Si 1.10 51.45 29.91 68.60 2.05 53.50 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 C -0.17 -7.08 8.37 30.62 0.26 -6.82 16 14 C -0.19 -8.75 8.58 30.62 0.26 -8.48 16 15 C 0.05 1.52 3.08 45.44 0.14 1.66 16 16 C -0.14 -4.47 7.48 31.12 0.23 -4.23 16 17 C 0.15 3.77 4.33 45.52 0.20 3.96 16 18 N -0.68 -15.67 5.27 -567.61 -2.99 -18.65 16 19 C 0.65 17.29 8.06 129.79 1.05 18.34 16 20 O -0.59 -18.94 11.48 19.81 0.23 -18.71 16 21 O -0.37 -8.51 9.94 -55.43 -0.55 -9.06 16 22 C 0.12 2.32 1.13 -10.80 -0.01 2.30 16 23 C -0.18 -3.64 8.37 71.98 0.60 -3.03 16 24 C -0.13 -1.59 8.85 71.98 0.64 -0.96 16 25 C -0.18 -3.19 8.37 71.98 0.60 -2.59 16 26 C -0.11 -2.47 6.19 31.12 0.19 -2.28 16 27 H 0.05 1.98 6.47 -2.38 -0.02 1.97 16 28 H 0.08 2.09 6.76 -2.38 -0.02 2.07 16 29 H 0.02 0.60 8.11 -2.38 -0.02 0.58 16 30 H 0.03 1.72 7.75 -2.39 -0.02 1.70 16 31 H 0.01 0.43 8.06 -2.39 -0.02 0.41 16 32 H 0.26 15.81 6.20 -92.71 -0.57 15.23 16 33 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 35 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 40 H 0.10 2.78 7.46 -2.39 -0.02 2.76 16 41 H 0.42 7.58 8.81 -92.70 -0.82 6.77 16 42 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 45 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 1.47 5.88 -2.39 -0.01 1.45 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 52 H 0.11 2.51 7.93 -2.39 -0.02 2.49 16 Total: -1.00 -67.74 405.98 1.68 -66.06 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.26 Total: 30.56 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 6.35 Total: -24.03 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -6.66 Total: -98.33 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.32 Total: -27.77 kcal Atomic # 14 Polarization: 51.45 SS G_CDS: 2.05 Total: 53.50 kcal Total: -67.74 1.68 -66.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878669443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.033 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds