Wall clock time and date at job start Tue Mar 31 2020 13:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46863 * 2 1 4 4 C 1.52998 * 109.47510 * 120.00315 * 2 1 3 5 5 H 1.09000 * 109.46737 * 185.00279 * 4 2 1 6 6 O 1.42896 * 109.46864 * 304.99947 * 4 2 1 7 7 C 1.50699 * 109.46951 * 65.00003 * 4 2 1 8 8 O 1.21276 * 119.99988 * 244.99637 * 7 4 2 9 9 N 1.34776 * 119.99824 * 65.00686 * 7 4 2 10 10 C 1.46923 * 120.63082 * 179.97438 * 9 7 4 11 11 C 1.53195 * 108.77538 * 233.62771 * 10 9 7 12 12 C 1.53039 * 109.30811 * 305.35827 * 11 10 9 13 13 C 1.53001 * 109.45569 * 181.38413 * 12 11 10 14 14 H 1.09000 * 110.89222 * 303.85511 * 13 12 11 15 15 C 1.55158 * 111.00356 * 179.97438 * 13 12 11 16 16 C 1.54319 * 102.94410 * 206.39078 * 15 13 12 17 17 N 1.47021 * 107.27252 * 22.18969 * 16 15 13 18 18 C 1.36938 * 125.65221 * 181.02638 * 17 16 15 19 19 H 1.08001 * 120.00256 * 185.86405 * 18 17 16 20 20 C 1.38817 * 119.99875 * 5.85817 * 18 17 16 21 21 N 1.31617 * 119.99708 * 7.33069 * 20 18 17 22 22 Si 1.86797 * 120.00185 * 187.32639 * 20 18 17 23 23 H 1.48504 * 109.47099 * 265.01485 * 22 20 18 24 24 H 1.48501 * 109.46950 * 25.01548 * 22 20 18 25 25 H 1.48501 * 109.47007 * 145.01576 * 22 20 18 26 26 C 1.47425 * 108.70421 * 1.28958 * 17 16 15 27 27 C 1.53043 * 109.52493 * 61.37863 * 12 11 10 28 28 C 1.46921 * 120.63268 * 0.02562 * 9 7 4 29 29 H 1.08996 * 109.47242 * 299.99454 * 1 2 3 30 30 H 1.08998 * 109.47524 * 59.99900 * 1 2 3 31 31 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46939 * 240.00835 * 2 1 3 33 33 H 1.08996 * 109.47174 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47133 * 300.00340 * 3 2 1 35 35 H 1.09002 * 109.46661 * 60.00665 * 3 2 1 36 36 H 0.96706 * 114.00162 * 60.00310 * 6 4 2 37 37 H 1.09004 * 109.59012 * 113.83501 * 10 9 7 38 38 H 1.09007 * 109.69991 * 353.48050 * 10 9 7 39 39 H 1.09004 * 109.49561 * 185.41088 * 11 10 9 40 40 H 1.08994 * 109.52339 * 65.33265 * 11 10 9 41 41 H 1.08991 * 109.46224 * 301.35855 * 12 11 10 42 42 H 1.08994 * 110.72068 * 88.02516 * 15 13 12 43 43 H 1.09002 * 110.87528 * 324.82218 * 15 13 12 44 44 H 1.09007 * 109.87935 * 262.77579 * 16 15 13 45 45 H 1.08995 * 110.01538 * 141.68498 * 16 15 13 46 46 H 0.97002 * 120.00101 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.36495 * 94.47926 * 26 17 16 48 48 H 1.08999 * 110.36968 * 216.80344 * 26 17 16 49 49 H 1.08994 * 109.50073 * 58.57211 * 27 12 11 50 50 H 1.08999 * 109.49848 * 178.67314 * 27 12 11 51 51 H 1.09003 * 109.59118 * 246.16056 * 28 9 7 52 52 H 1.09000 * 109.58506 * 6.44633 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2950 6 8 1.4703 -0.1189 2.4130 7 6 1.6414 -2.1733 1.1887 8 8 0.8662 -2.6238 2.0053 9 7 2.1466 -2.9713 0.2272 10 6 1.7679 -4.3891 0.1556 11 6 3.0420 -5.2397 0.1414 12 6 3.9491 -4.7731 -0.9995 13 6 5.2072 -5.6430 -1.0385 14 1 5.7220 -5.6251 -0.0779 15 6 6.1540 -5.2003 -2.1852 16 6 6.9299 -6.4937 -2.5116 17 7 6.1158 -7.6225 -2.0376 18 6 6.4602 -8.9453 -2.1205 19 1 5.7520 -9.7069 -1.8292 20 6 7.7195 -9.3072 -2.5789 21 7 8.6311 -8.3832 -2.7967 22 14 8.1202 -11.1055 -2.8867 23 1 8.7817 -11.6777 -1.6866 24 1 6.8665 -11.8516 -3.1640 25 1 9.0310 -11.2169 -4.0543 26 6 4.8644 -7.0949 -1.4640 27 6 4.3460 -3.3126 -0.7727 28 6 3.0874 -2.4403 -0.7686 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 0.5042 -0.1509 2.4395 37 1 1.1978 -4.5696 -0.7557 38 1 1.1627 -4.6521 1.0233 39 1 2.7786 -6.2868 -0.0082 40 1 3.5650 -5.1282 1.0911 41 1 3.4167 -4.8620 -1.9463 42 1 6.8331 -4.4188 -1.8445 43 1 5.5842 -4.8635 -3.0512 44 1 7.8914 -6.4888 -1.9980 45 1 7.0849 -6.5744 -3.5874 46 1 9.5113 -8.6361 -3.1167 47 1 4.0733 -7.0961 -2.2139 48 1 4.5668 -7.6838 -0.5964 49 1 4.8565 -3.2188 0.1857 50 1 5.0110 -2.9878 -1.5730 51 1 2.6253 -2.4614 -1.7556 52 1 3.3520 -1.4149 -0.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039177023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:47 Heat of formation + Delta-G solvation = -78.348788 kcal Electronic energy + Delta-G solvation = -29060.146755 eV Core-core repulsion = 25252.469230 eV Total energy + Delta-G solvation = -3807.677525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.94883 -38.84725 -37.48578 -36.64875 -34.44730 -33.57596 -31.86534 -31.38152 -29.21208 -28.36308 -27.69087 -27.11451 -25.24127 -23.71425 -23.27577 -21.51041 -20.62939 -19.90761 -19.62280 -19.45103 -17.86385 -16.95961 -16.80767 -16.53845 -15.63632 -15.27667 -14.92081 -14.56670 -14.45411 -14.24016 -14.12278 -13.76176 -13.65829 -13.37684 -13.05490 -12.84425 -12.69642 -12.52317 -12.48030 -12.28497 -12.07229 -11.96948 -11.78266 -11.59288 -11.39630 -11.33010 -11.05067 -10.98072 -10.91789 -10.79895 -10.66722 -10.55016 -10.09424 -9.89582 -9.79712 -9.73779 -9.64765 -9.56286 -8.81867 -8.59957 -6.78849 -5.67918 -3.03740 2.31864 2.71750 3.40286 3.45772 3.47836 3.89232 4.09852 4.25077 4.37350 4.50324 4.57283 4.63729 4.76167 4.82688 4.94782 5.04538 5.08484 5.13403 5.21531 5.23273 5.37639 5.39745 5.43782 5.47794 5.56685 5.57831 5.59334 5.64668 5.67741 5.76856 5.80566 5.86180 5.88781 5.96862 5.99375 6.12464 6.17145 6.32294 6.39081 6.44931 6.57288 6.62328 6.77885 7.01285 7.05900 7.23353 7.51561 7.68460 7.85515 7.89495 8.30377 9.23815 9.85431 10.52089 11.41397 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.002391 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.559860 B =11709.456861 C =12191.978033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C -0.143 4.143 4 C 0.096 3.904 5 H 0.123 0.877 6 O -0.536 6.536 7 C 0.488 3.512 8 O -0.539 6.539 9 N -0.604 5.604 10 C 0.110 3.890 11 C -0.129 4.129 12 C -0.073 4.073 13 C -0.096 4.096 14 H 0.072 0.928 15 C -0.136 4.136 16 C 0.170 3.830 17 N -0.606 5.606 18 C -0.227 4.227 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.290 1.290 26 C 0.142 3.858 27 C -0.131 4.131 28 C 0.100 3.900 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.380 0.620 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.025 0.975 46 H 0.251 0.749 47 H 0.017 0.983 48 H 0.035 0.965 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.514 19.913 3.686 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.201 4.201 4 C 0.033 3.967 5 H 0.141 0.859 6 O -0.341 6.341 7 C 0.276 3.724 8 O -0.417 6.417 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.167 4.167 12 C -0.092 4.092 13 C -0.115 4.115 14 H 0.090 0.910 15 C -0.174 4.174 16 C 0.045 3.955 17 N -0.332 5.332 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.207 1.207 25 H -0.217 1.217 26 C 0.016 3.984 27 C -0.169 4.169 28 C -0.022 4.022 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.230 0.770 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.091 0.909 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.128 19.655 4.205 24.568 hybrid contribution -0.113 -1.194 -0.496 1.298 sum -14.242 18.461 3.708 23.609 Atomic orbital electron populations 1.21871 0.94430 1.02340 1.02609 1.21974 0.97272 0.98023 0.97834 1.21777 1.01208 0.94637 1.02443 1.21924 0.99839 0.88026 0.86899 0.85927 1.86583 1.26443 1.79435 1.41674 1.21558 0.81007 0.89392 0.80488 1.90698 1.35533 1.75916 1.39510 1.48181 1.45347 1.10579 1.29759 1.21676 0.97381 0.79279 1.02869 1.21985 0.95425 0.99796 0.99498 1.21091 0.96164 0.93683 0.98290 1.22395 0.94463 0.95773 0.98906 0.90965 1.22861 0.98128 0.99443 0.97014 1.21207 0.93914 0.82661 0.97685 1.44491 1.16472 1.02544 1.69675 1.19058 0.97320 0.81470 1.37705 0.90596 1.24807 0.95891 0.97674 1.02235 1.69964 1.04274 1.30807 1.51753 0.86129 0.77850 0.84454 0.77528 1.21673 1.20679 1.21668 1.21615 0.90029 0.91519 0.95271 1.22001 0.96408 0.95396 1.03092 1.22013 0.90192 0.97947 0.92088 0.92118 0.91630 0.92411 0.89080 0.92293 0.92239 0.91756 0.76996 0.91441 0.89207 0.90146 0.91563 0.91012 0.92480 0.92780 0.92156 0.95669 0.93862 0.96584 0.94651 0.91424 0.90013 0.90882 0.89635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.58 37.16 0.32 -0.67 16 2 C -0.13 -0.84 2.30 -90.62 -0.21 -1.04 16 3 C -0.14 -0.79 9.09 37.16 0.34 -0.45 16 4 C 0.10 0.83 2.30 -27.88 -0.06 0.76 16 5 H 0.12 0.96 7.43 -51.93 -0.39 0.57 16 6 O -0.54 -5.32 12.43 -55.09 -0.68 -6.00 16 7 C 0.49 5.51 6.09 -10.99 -0.07 5.44 16 8 O -0.54 -8.05 15.74 -14.30 -0.23 -8.28 16 9 N -0.60 -6.08 2.97 -172.80 -0.51 -6.59 16 10 C 0.11 1.19 6.43 -3.71 -0.02 1.16 16 11 C -0.13 -1.51 5.24 -26.61 -0.14 -1.64 16 12 C -0.07 -0.88 1.68 -90.58 -0.15 -1.04 16 13 C -0.10 -1.56 2.58 -88.35 -0.23 -1.79 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.14 -2.39 5.27 -24.90 -0.13 -2.52 16 16 C 0.17 4.10 5.45 -3.07 -0.02 4.08 16 17 N -0.61 -15.51 3.39 -169.93 -0.58 -16.08 16 18 C -0.23 -6.39 10.26 -15.06 -0.15 -6.55 16 19 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 20 C -0.01 -0.28 5.45 -17.43 -0.09 -0.38 16 21 N -0.92 -27.24 10.45 55.49 0.58 -26.66 16 22 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.14 2.86 5.95 -2.41 -0.01 2.84 16 27 C -0.13 -1.28 5.16 -26.64 -0.14 -1.42 16 28 C 0.10 0.79 4.90 -3.74 -0.02 0.77 16 29 H 0.06 0.35 6.72 -51.93 -0.35 0.00 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.46 7.38 -51.93 -0.38 0.07 16 32 H 0.09 0.52 5.43 -51.93 -0.28 0.24 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.39 7.82 -51.93 -0.41 -0.01 16 36 H 0.38 3.11 6.94 45.56 0.32 3.43 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.09 7.01 -51.93 -0.36 0.72 16 39 H 0.08 0.97 7.45 -51.93 -0.39 0.58 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 42 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 43 H 0.05 0.88 8.04 -51.93 -0.42 0.46 16 44 H 0.06 1.63 6.88 -51.93 -0.36 1.28 16 45 H 0.03 0.67 7.97 -51.93 -0.41 0.25 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.32 7.99 -51.93 -0.41 -0.09 16 48 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.76 7.21 -51.93 -0.37 0.39 16 51 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.09 0.51 4.74 -51.93 -0.25 0.27 16 LS Contribution 387.09 15.07 5.83 5.83 Total: -1.00 -33.20 387.09 -10.05 -43.26 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -8.65 Total: -0.27 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -0.79 Total: -2.43 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.51 Total: -49.33 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.91 Total: -14.28 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.20 -10.05 -43.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039177023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.092 kcal (2) G-P(sol) polarization free energy of solvation -33.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds