Wall clock time and date at job start Tue Mar 31 2020 13:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46863 * 2 1 4 4 C 1.52998 * 109.47510 * 120.00315 * 2 1 3 5 5 H 1.09000 * 109.46737 * 185.00279 * 4 2 1 6 6 O 1.42896 * 109.46864 * 304.99947 * 4 2 1 7 7 C 1.50699 * 109.46951 * 65.00003 * 4 2 1 8 8 O 1.21276 * 119.99988 * 244.99637 * 7 4 2 9 9 N 1.34776 * 119.99824 * 65.00686 * 7 4 2 10 10 C 1.46923 * 120.63082 * 179.97438 * 9 7 4 11 11 C 1.53195 * 108.77538 * 233.62771 * 10 9 7 12 12 C 1.53039 * 109.30811 * 305.35827 * 11 10 9 13 13 C 1.53001 * 109.45569 * 181.38413 * 12 11 10 14 14 H 1.09000 * 110.89222 * 303.85511 * 13 12 11 15 15 C 1.55158 * 111.00356 * 179.97438 * 13 12 11 16 16 C 1.54319 * 102.94410 * 206.39078 * 15 13 12 17 17 N 1.47021 * 107.27252 * 22.18969 * 16 15 13 18 18 C 1.36938 * 125.65221 * 181.02638 * 17 16 15 19 19 H 1.08001 * 120.00256 * 185.86405 * 18 17 16 20 20 C 1.38817 * 119.99875 * 5.85817 * 18 17 16 21 21 N 1.31617 * 119.99708 * 7.33069 * 20 18 17 22 22 Si 1.86797 * 120.00185 * 187.32639 * 20 18 17 23 23 H 1.48504 * 109.47099 * 265.01485 * 22 20 18 24 24 H 1.48501 * 109.46950 * 25.01548 * 22 20 18 25 25 H 1.48501 * 109.47007 * 145.01576 * 22 20 18 26 26 C 1.47425 * 108.70421 * 1.28958 * 17 16 15 27 27 C 1.53043 * 109.52493 * 61.37863 * 12 11 10 28 28 C 1.46921 * 120.63268 * 0.02562 * 9 7 4 29 29 H 1.08996 * 109.47242 * 299.99454 * 1 2 3 30 30 H 1.08998 * 109.47524 * 59.99900 * 1 2 3 31 31 H 1.09001 * 109.46628 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46939 * 240.00835 * 2 1 3 33 33 H 1.08996 * 109.47174 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47133 * 300.00340 * 3 2 1 35 35 H 1.09002 * 109.46661 * 60.00665 * 3 2 1 36 36 H 0.96706 * 114.00162 * 60.00310 * 6 4 2 37 37 H 1.09004 * 109.59012 * 113.83501 * 10 9 7 38 38 H 1.09007 * 109.69991 * 353.48050 * 10 9 7 39 39 H 1.09004 * 109.49561 * 185.41088 * 11 10 9 40 40 H 1.08994 * 109.52339 * 65.33265 * 11 10 9 41 41 H 1.08991 * 109.46224 * 301.35855 * 12 11 10 42 42 H 1.08994 * 110.72068 * 88.02516 * 15 13 12 43 43 H 1.09002 * 110.87528 * 324.82218 * 15 13 12 44 44 H 1.09007 * 109.87935 * 262.77579 * 16 15 13 45 45 H 1.08995 * 110.01538 * 141.68498 * 16 15 13 46 46 H 0.97002 * 120.00101 * 179.97438 * 21 20 18 47 47 H 1.09005 * 110.36495 * 94.47926 * 26 17 16 48 48 H 1.08999 * 110.36968 * 216.80344 * 26 17 16 49 49 H 1.08994 * 109.50073 * 58.57211 * 27 12 11 50 50 H 1.08999 * 109.49848 * 178.67314 * 27 12 11 51 51 H 1.09003 * 109.59118 * 246.16056 * 28 9 7 52 52 H 1.09000 * 109.58506 * 6.44633 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6443 1.2950 6 8 1.4703 -0.1189 2.4130 7 6 1.6414 -2.1733 1.1887 8 8 0.8662 -2.6238 2.0053 9 7 2.1466 -2.9713 0.2272 10 6 1.7679 -4.3891 0.1556 11 6 3.0420 -5.2397 0.1414 12 6 3.9491 -4.7731 -0.9995 13 6 5.2072 -5.6430 -1.0385 14 1 5.7220 -5.6251 -0.0779 15 6 6.1540 -5.2003 -2.1852 16 6 6.9299 -6.4937 -2.5116 17 7 6.1158 -7.6225 -2.0376 18 6 6.4602 -8.9453 -2.1205 19 1 5.7520 -9.7069 -1.8292 20 6 7.7195 -9.3072 -2.5789 21 7 8.6311 -8.3832 -2.7967 22 14 8.1202 -11.1055 -2.8867 23 1 8.7817 -11.6777 -1.6866 24 1 6.8665 -11.8516 -3.1640 25 1 9.0310 -11.2169 -4.0543 26 6 4.8644 -7.0949 -1.4640 27 6 4.3460 -3.3126 -0.7727 28 6 3.0874 -2.4403 -0.7686 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 0.5042 -0.1509 2.4395 37 1 1.1978 -4.5696 -0.7557 38 1 1.1627 -4.6521 1.0233 39 1 2.7786 -6.2868 -0.0082 40 1 3.5650 -5.1282 1.0911 41 1 3.4167 -4.8620 -1.9463 42 1 6.8331 -4.4188 -1.8445 43 1 5.5842 -4.8635 -3.0512 44 1 7.8914 -6.4888 -1.9980 45 1 7.0849 -6.5744 -3.5874 46 1 9.5113 -8.6361 -3.1167 47 1 4.0733 -7.0961 -2.2139 48 1 4.5668 -7.6838 -0.5964 49 1 4.8565 -3.2188 0.1857 50 1 5.0110 -2.9878 -1.5730 51 1 2.6253 -2.4614 -1.7556 52 1 3.3520 -1.4149 -0.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039177023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:45 Heat of formation + Delta-G solvation = -99.183790 kcal Electronic energy + Delta-G solvation = -29061.050228 eV Core-core repulsion = 25252.469230 eV Total energy + Delta-G solvation = -3808.580998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.75228 -39.98181 -38.47907 -37.77784 -35.43965 -34.69034 -33.43984 -32.27450 -30.89917 -29.59314 -28.23632 -28.06339 -26.82215 -25.07102 -24.18442 -22.43524 -21.73693 -21.26102 -20.89693 -20.33019 -18.84341 -18.61504 -17.73873 -17.18009 -16.78324 -16.44220 -16.27374 -15.89944 -15.69340 -15.27993 -15.12111 -14.69952 -14.56481 -14.22267 -14.10269 -13.84632 -13.79539 -13.78978 -13.48182 -13.30081 -13.21812 -12.95377 -12.82775 -12.76817 -12.66854 -12.32111 -12.22253 -12.15844 -12.07337 -12.01245 -11.80918 -11.76039 -11.64080 -11.45512 -11.30982 -11.07127 -10.99866 -10.71746 -10.43608 -9.66524 -8.86597 -7.83247 -5.21293 1.44096 1.45515 1.49308 1.55062 1.94632 2.49149 3.23497 3.31600 3.43410 3.62359 3.69915 3.71732 3.84058 3.88396 3.94499 4.11096 4.15587 4.24459 4.29225 4.43487 4.44600 4.46003 4.52603 4.61323 4.63222 4.73989 4.79695 4.83364 4.85940 4.90878 4.92370 4.99492 5.02120 5.04902 5.05258 5.14552 5.17470 5.19173 5.30161 5.32808 5.41728 5.46846 5.47106 5.56428 5.62550 5.67426 5.84862 6.23610 6.30714 6.55250 7.07407 7.11034 7.80199 8.44569 9.24381 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.031293 B = 0.002391 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.559860 B =11709.456861 C =12191.978033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.141 4.141 4 C 0.098 3.902 5 H 0.135 0.865 6 O -0.550 6.550 7 C 0.484 3.516 8 O -0.584 6.584 9 N -0.602 5.602 10 C 0.114 3.886 11 C -0.123 4.123 12 C -0.063 4.063 13 C -0.079 4.079 14 H 0.060 0.940 15 C -0.118 4.118 16 C 0.173 3.827 17 N -0.630 5.630 18 C -0.243 4.243 19 H 0.078 0.922 20 C -0.068 4.068 21 N -0.949 5.949 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.269 1.269 25 H -0.293 1.293 26 C 0.136 3.864 27 C -0.128 4.128 28 C 0.100 3.900 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.385 0.615 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.021 0.979 45 H -0.010 1.010 46 H 0.246 0.754 47 H 0.028 0.972 48 H 0.031 0.969 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.520 21.754 2.847 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.198 4.198 4 C 0.036 3.964 5 H 0.153 0.847 6 O -0.357 6.357 7 C 0.273 3.727 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.009 4.009 11 C -0.162 4.162 12 C -0.082 4.082 13 C -0.098 4.098 14 H 0.078 0.922 15 C -0.156 4.156 16 C 0.048 3.952 17 N -0.356 5.356 18 C -0.372 4.372 19 H 0.096 0.904 20 C -0.261 4.261 21 N -0.598 5.598 22 Si 0.804 3.196 23 H -0.214 1.214 24 H -0.194 1.194 25 H -0.219 1.219 26 C 0.011 3.989 27 C -0.166 4.166 28 C -0.022 4.022 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.236 0.764 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.008 0.992 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.112 0.888 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -15.158 21.512 3.359 26.529 hybrid contribution 0.176 -1.806 -0.211 1.826 sum -14.982 19.706 3.148 24.954 Atomic orbital electron populations 1.21870 0.94661 1.01341 1.03343 1.21954 0.97043 0.98430 0.96869 1.21765 1.01680 0.93796 1.02588 1.22085 1.00417 0.86274 0.87660 0.84742 1.86553 1.27062 1.79421 1.42662 1.22114 0.80293 0.90499 0.79829 1.90675 1.37652 1.76897 1.41259 1.48271 1.45275 1.10097 1.29858 1.21568 0.96642 0.79784 1.02869 1.21897 0.95746 0.99752 0.98759 1.21003 0.93874 0.94487 0.98832 1.22257 0.96041 0.93900 0.97611 0.92164 1.22722 0.98123 0.96430 0.98314 1.21036 0.93553 0.85664 0.94918 1.44851 1.18379 1.02276 1.70140 1.19450 0.97505 0.83147 1.37117 0.90387 1.25660 0.95961 1.01859 1.02664 1.70192 1.04310 1.32596 1.52748 0.85096 0.77752 0.79669 0.77042 1.21379 1.19392 1.21907 1.21836 0.88220 0.93794 0.95054 1.21976 0.97561 0.93709 1.03329 1.22222 0.88844 0.98604 0.92484 0.91995 0.90361 0.94213 0.87746 0.91540 0.91092 0.92645 0.76424 0.89829 0.90986 0.90790 0.92899 0.89960 0.90199 0.90463 0.96098 0.99194 0.94471 0.95464 0.95071 0.92063 0.88575 0.88766 0.87165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.58 71.98 0.62 -1.03 16 2 C -0.12 -1.19 2.30 -10.79 -0.02 -1.22 16 3 C -0.14 -1.10 9.09 71.98 0.65 -0.45 16 4 C 0.10 1.48 2.30 29.85 0.07 1.55 16 5 H 0.14 1.69 7.43 -2.39 -0.02 1.67 16 6 O -0.55 -10.29 12.43 -129.99 -1.62 -11.91 16 7 C 0.48 10.23 6.09 87.66 0.53 10.76 16 8 O -0.58 -17.42 15.74 15.97 0.25 -17.17 16 9 N -0.60 -10.67 2.97 -819.02 -2.43 -13.11 16 10 C 0.11 2.27 6.43 86.36 0.56 2.83 16 11 C -0.12 -2.70 5.24 30.67 0.16 -2.54 16 12 C -0.06 -1.34 1.68 -10.77 -0.02 -1.36 16 13 C -0.08 -2.43 2.58 -9.32 -0.02 -2.46 16 14 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 15 C -0.12 -3.92 5.27 31.78 0.17 -3.75 16 16 C 0.17 8.52 5.45 86.73 0.47 9.00 16 17 N -0.63 -32.79 3.39 -691.53 -2.35 -35.13 16 18 C -0.24 -13.93 10.26 84.03 0.86 -13.07 16 19 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 20 C -0.07 -3.98 5.45 84.86 0.46 -3.51 16 21 N -0.95 -58.05 10.45 21.65 0.23 -57.83 16 22 Si 0.98 46.49 29.56 68.60 2.03 48.51 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 26 C 0.14 5.40 5.95 86.93 0.52 5.91 16 27 C -0.13 -2.01 5.16 30.65 0.16 -1.85 16 28 C 0.10 1.16 4.90 86.34 0.42 1.58 16 29 H 0.06 0.63 6.72 -2.39 -0.02 0.62 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.04 0.57 7.38 -2.39 -0.02 0.56 16 32 H 0.10 0.74 5.43 -2.39 -0.01 0.72 16 33 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.55 7.82 -2.39 -0.02 0.53 16 36 H 0.39 6.11 6.94 -74.05 -0.51 5.60 16 37 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.07 1.73 7.01 -2.38 -0.02 1.71 16 39 H 0.07 1.71 7.45 -2.38 -0.02 1.69 16 40 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.66 8.07 -2.39 -0.02 1.65 16 42 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 43 H 0.08 2.25 8.04 -2.39 -0.02 2.23 16 44 H 0.02 1.18 6.88 -2.38 -0.02 1.16 16 45 H -0.01 -0.56 7.97 -2.39 -0.02 -0.58 16 46 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.03 1.04 7.99 -2.38 -0.02 1.02 16 48 H 0.03 1.25 8.05 -2.39 -0.02 1.23 16 49 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.10 1.31 7.21 -2.39 -0.02 1.30 16 51 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.11 0.79 4.74 -2.39 -0.01 0.78 16 Total: -1.00 -75.45 387.09 2.08 -73.38 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.38 Total: 12.86 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.59 Total: 0.39 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.55 Total: -106.06 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -1.36 Total: -29.07 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -75.45 2.08 -73.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039177023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.805 kcal (2) G-P(sol) polarization free energy of solvation -75.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds