Wall clock time and date at job start Tue Mar 31 2020 13:57:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47106 * 2 1
4 4 C 1.53005 * 109.46578 * 240.00314 * 2 1 3
5 5 N 1.46501 * 109.46932 * 60.00467 * 4 2 1
6 6 C 1.36935 * 119.99477 * 180.02562 * 5 4 2
7 7 H 1.08004 * 120.00661 * 359.97438 * 6 5 4
8 8 C 1.38821 * 119.99917 * 179.97438 * 6 5 4
9 9 N 1.31618 * 119.99829 * 179.97438 * 8 6 5
10 10 Si 1.86799 * 119.99868 * 359.97438 * 8 6 5
11 11 H 1.48498 * 109.46948 * 90.00301 * 10 8 6
12 12 H 1.48495 * 109.47122 * 210.00169 * 10 8 6
13 13 H 1.48504 * 109.47004 * 330.00477 * 10 8 6
14 14 C 1.53000 * 109.47236 * 120.00395 * 2 1 3
15 15 C 1.53034 * 109.45961 * 299.99774 * 14 2 1
16 16 C 1.53190 * 109.31321 * 178.62716 * 15 14 2
17 17 N 1.46922 * 108.77478 * 54.63467 * 16 15 14
18 18 C 1.34776 * 120.63250 * 126.36769 * 17 16 15
19 19 O 1.21287 * 119.99890 * 5.31296 * 18 17 16
20 20 C 1.50697 * 120.00195 * 185.31449 * 18 17 16
21 21 H 1.08996 * 110.27574 * 307.22849 * 20 18 17
22 22 C 1.54943 * 110.31172 * 69.31990 * 20 18 17
23 23 C 1.55310 * 100.98344 * 155.33759 * 22 20 18
24 24 C 1.54444 * 102.22573 * 325.92146 * 23 22 20
25 25 O 1.43237 * 107.60548 * 21.29687 * 24 23 22
26 26 C 1.46924 * 118.73787 * 306.64526 * 17 16 15
27 27 C 1.52762 * 109.00891 * 53.31169 * 26 17 16
28 28 H 1.09002 * 109.46632 * 299.99803 * 1 2 3
29 29 H 1.09000 * 109.47145 * 59.99489 * 1 2 3
30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47433 * 180.02562 * 3 2 1
32 32 H 1.09000 * 109.47535 * 300.00272 * 3 2 1
33 33 H 1.09002 * 109.47214 * 60.00554 * 3 2 1
34 34 H 1.09000 * 109.46463 * 179.97438 * 4 2 1
35 35 H 1.08994 * 109.46920 * 300.00081 * 4 2 1
36 36 H 0.96996 * 120.00507 * 359.97438 * 5 4 2
37 37 H 0.97001 * 119.99538 * 179.97438 * 9 8 6
38 38 H 1.08998 * 109.45526 * 59.97201 * 14 2 1
39 39 H 1.09008 * 109.49911 * 58.67515 * 15 14 2
40 40 H 1.09000 * 109.52882 * 298.60002 * 15 14 2
41 41 H 1.09003 * 109.58632 * 294.84706 * 16 15 14
42 42 H 1.08999 * 109.70434 * 174.49327 * 16 15 14
43 43 H 1.08998 * 111.12634 * 273.27895 * 22 20 18
44 44 H 1.09001 * 111.12328 * 37.40390 * 22 20 18
45 45 H 1.09001 * 110.84665 * 84.07602 * 23 22 20
46 46 H 1.08998 * 110.84852 * 207.70014 * 23 22 20
47 47 H 1.08997 * 109.78871 * 261.79006 * 24 23 22
48 48 H 1.09002 * 109.92432 * 140.87594 * 24 23 22
49 49 H 1.09009 * 109.58908 * 173.14408 * 26 17 16
50 50 H 1.09001 * 109.58821 * 293.56670 * 26 17 16
51 51 H 1.08999 * 109.56283 * 185.55456 * 27 26 17
52 52 H 1.08996 * 109.36307 * 65.50038 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 -1.2494
5 7 1.5516 -0.0304 -2.4454
6 6 1.8819 -0.4986 -3.6892
7 1 2.5027 -1.3768 -3.7884
8 6 1.4188 0.1556 -4.8226
9 7 1.7367 -0.2940 -6.0180
10 14 0.3444 1.6741 -4.6511
11 1 1.2027 2.8851 -4.6059
12 1 -0.5762 1.7629 -5.8128
13 1 -0.4472 1.5814 -3.3980
14 6 2.0401 -0.7213 1.2492
15 6 1.5299 0.0002 2.4986
16 6 2.0139 -0.7443 3.7468
17 7 3.4756 -0.8769 3.6812
18 6 4.2497 -0.4574 4.7016
19 8 3.7383 -0.0541 5.7247
20 6 5.7507 -0.4892 4.5713
21 1 6.0827 -1.4827 4.2699
22 6 6.2241 0.5704 3.5447
23 6 7.6790 0.8206 4.0272
24 6 7.5486 0.6579 5.5575
25 8 6.3671 -0.1107 5.8124
26 6 4.0779 -1.4700 2.4795
27 6 3.5704 -0.7223 1.2478
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9564 -0.8899
33 1 1.6768 1.9563 0.8900
34 1 3.1299 -0.7208 -1.2496
35 1 1.6765 -1.7488 -1.2494
36 1 0.9937 0.7580 -2.3564
37 1 1.4128 0.1629 -6.8100
38 1 1.6762 -1.7488 1.2491
39 1 0.4400 0.0211 2.4871
40 1 1.9131 1.0206 2.5121
41 1 1.5584 -1.7340 3.7816
42 1 1.7376 -0.1834 4.6396
43 1 6.2098 0.1694 2.5313
44 1 5.6258 1.4789 3.6137
45 1 8.3582 0.0745 3.6145
46 1 8.0052 1.8283 3.7699
47 1 7.4608 1.6378 6.0266
48 1 8.4211 0.1364 5.9512
49 1 5.1633 -1.3856 2.5350
50 1 3.7942 -2.5201 2.4087
51 1 3.9331 -1.2158 0.3461
52 1 3.9350 0.3045 1.2727
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001101506423.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:57:08
Heat of formation + Delta-G solvation = -73.910891 kcal
Electronic energy + Delta-G solvation = -29424.221591 eV
Core-core repulsion = 25616.736508 eV
Total energy + Delta-G solvation = -3807.485083 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.97087 -39.58143 -38.36303 -36.31927 -33.96067 -32.69715 -31.82755 -31.43732
-30.54906 -29.56208 -27.09766 -26.27859 -25.54718 -23.90596 -22.91176 -22.22920
-22.13166 -20.99579 -19.33983 -18.42544 -18.05942 -17.43850 -16.85633 -16.18362
-15.78807 -15.39378 -14.95265 -14.85880 -14.60374 -14.27630 -14.24907 -14.06008
-13.86590 -13.62288 -13.29632 -13.02925 -12.97896 -12.68236 -12.50768 -12.30608
-12.07138 -11.92416 -11.85011 -11.75259 -11.66053 -11.38354 -11.32812 -11.26866
-10.99713 -10.87700 -10.78525 -10.34585 -10.28598 -10.20258 -10.12763 -9.79332
-9.58304 -9.54744 -8.90083 -8.82071 -7.21305 -5.78265 -3.12399 2.34697
2.53767 3.34469 3.37037 3.43072 3.53134 3.94260 4.16790 4.37678
4.54401 4.57373 4.59936 4.64126 4.67717 4.73675 4.84057 4.91693
5.05374 5.15329 5.22345 5.25228 5.27722 5.34346 5.37880 5.39644
5.42859 5.45761 5.55248 5.58473 5.64866 5.65447 5.71788 5.79478
5.89710 5.91989 5.93725 6.02353 6.14014 6.19431 6.26397 6.30371
6.43283 6.52574 6.55072 6.60313 6.74657 6.81220 7.15238 7.95733
7.99097 8.41457 9.21377 9.93989 10.14335 11.40515
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.019608 B = 0.002876 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.662209 B = 9733.778533 C =10430.199640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.069 4.069
3 C -0.140 4.140
4 C 0.167 3.833
5 N -0.753 5.753
6 C -0.241 4.241
7 H 0.089 0.911
8 C 0.003 3.997
9 N -0.936 5.936
10 Si 0.881 3.119
11 H -0.284 1.284
12 H -0.291 1.291
13 H -0.277 1.277
14 C -0.071 4.071
15 C -0.132 4.132
16 C 0.113 3.887
17 N -0.606 5.606
18 C 0.516 3.484
19 O -0.526 6.526
20 C 0.065 3.935
21 H 0.096 0.904
22 C -0.146 4.146
23 C -0.154 4.154
24 C 0.048 3.952
25 O -0.356 6.356
26 C 0.101 3.899
27 C -0.137 4.137
28 H 0.049 0.951
29 H 0.058 0.942
30 H 0.054 0.946
31 H 0.056 0.944
32 H 0.056 0.944
33 H 0.048 0.952
34 H 0.028 0.972
35 H 0.024 0.976
36 H 0.361 0.639
37 H 0.259 0.741
38 H 0.073 0.927
39 H 0.079 0.921
40 H 0.070 0.930
41 H 0.067 0.933
42 H 0.089 0.911
43 H 0.097 0.903
44 H 0.085 0.915
45 H 0.082 0.918
46 H 0.087 0.913
47 H 0.071 0.929
48 H 0.073 0.927
49 H 0.083 0.917
50 H 0.073 0.927
51 H 0.088 0.912
52 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.521 0.124 21.942 23.538
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.070 4.070
3 C -0.197 4.197
4 C 0.040 3.960
5 N -0.400 5.400
6 C -0.371 4.371
7 H 0.107 0.893
8 C -0.192 4.192
9 N -0.584 5.584
10 Si 0.712 3.288
11 H -0.211 1.211
12 H -0.218 1.218
13 H -0.204 1.204
14 C -0.090 4.090
15 C -0.170 4.170
16 C -0.009 4.009
17 N -0.342 5.342
18 C 0.303 3.697
19 O -0.402 6.402
20 C 0.004 3.996
21 H 0.113 0.887
22 C -0.184 4.184
23 C -0.192 4.192
24 C -0.029 4.029
25 O -0.274 6.274
26 C -0.021 4.021
27 C -0.175 4.175
28 H 0.068 0.932
29 H 0.077 0.923
30 H 0.073 0.927
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.067 0.933
34 H 0.046 0.954
35 H 0.042 0.958
36 H 0.195 0.805
37 H 0.069 0.931
38 H 0.092 0.908
39 H 0.098 0.902
40 H 0.088 0.912
41 H 0.085 0.915
42 H 0.107 0.893
43 H 0.115 0.885
44 H 0.103 0.897
45 H 0.101 0.899
46 H 0.106 0.894
47 H 0.090 0.910
48 H 0.091 0.909
49 H 0.101 0.899
50 H 0.091 0.909
51 H 0.106 0.894
52 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 8.275 0.148 22.537 24.008
hybrid contribution -0.677 1.096 -0.466 1.370
sum 7.598 1.244 22.071 23.375
Atomic orbital electron populations
1.21875 0.94741 1.01788 1.01289 1.20752 0.95693 0.95778 0.94745
1.21907 1.01009 0.95625 1.01128 1.20708 0.96375 0.94261 0.84631
1.42776 1.61929 1.33173 1.02098 1.19064 1.26215 1.10030 0.81754
0.89321 1.24658 1.00545 0.98902 0.95122 1.69698 1.49929 1.41998
0.96766 0.86598 0.80945 0.84388 0.76888 1.21110 1.21752 1.20363
1.21068 0.94512 0.99621 0.93755 1.22100 1.01384 0.99917 0.93588
1.21641 0.78743 1.00960 0.99528 1.48061 1.07143 1.61426 1.17537
1.20410 0.88662 0.77496 0.83179 1.90705 1.74939 1.46126 1.28386
1.22827 0.91000 0.99833 0.85956 0.88691 1.23320 0.96384 0.99324
0.99378 1.23149 0.96837 1.03796 0.95396 1.23228 0.87891 0.96237
0.95497 1.88524 1.39878 1.72336 1.26694 1.21869 0.98132 0.97672
0.84433 1.22079 0.96461 1.01590 0.97382 0.93216 0.92259 0.92719
0.92549 0.92492 0.93305 0.95399 0.95837 0.80513 0.93105 0.90846
0.90242 0.91178 0.91452 0.89267 0.88497 0.89669 0.89947 0.89395
0.91027 0.90916 0.89895 0.90879 0.89407 0.90979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.94 7.95 37.16 0.30 -1.64 16
2 C -0.07 -0.94 0.33 -154.50 -0.05 -0.99 16
3 C -0.14 -1.90 7.60 37.16 0.28 -1.62 16
4 C 0.17 2.97 4.80 -4.04 -0.02 2.96 16
5 N -0.75 -17.14 4.81 -59.90 -0.29 -17.43 16
6 C -0.24 -6.66 10.47 -15.06 -0.16 -6.82 16
7 H 0.09 2.63 8.06 -52.48 -0.42 2.20 16
8 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16
9 N -0.94 -29.16 13.97 55.49 0.78 -28.38 16
10 Si 0.88 21.88 27.74 -169.99 -4.71 17.16 16
11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16
12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
13 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16
14 C -0.07 -0.74 1.51 -90.58 -0.14 -0.88 16
15 C -0.13 -1.29 4.65 -26.62 -0.12 -1.41 16
16 C 0.11 1.13 6.42 -3.71 -0.02 1.11 16
17 N -0.61 -6.08 2.98 -173.03 -0.52 -6.59 16
18 C 0.52 6.29 7.06 -10.99 -0.08 6.21 16
19 O -0.53 -8.64 15.99 -13.74 -0.22 -8.86 16
20 C 0.06 0.62 2.89 -26.86 -0.08 0.54 16
21 H 0.10 0.72 7.36 -51.93 -0.38 0.34 16
22 C -0.15 -1.07 5.97 -24.48 -0.15 -1.22 16
23 C -0.15 -0.91 7.03 -24.75 -0.17 -1.08 16
24 C 0.05 0.37 7.80 37.91 0.30 0.67 16
25 O -0.36 -4.18 10.61 -54.53 -0.58 -4.76 16
26 C 0.10 0.80 5.95 -3.93 -0.02 0.78 16
27 C -0.14 -1.28 4.63 -26.83 -0.12 -1.41 16
28 H 0.05 0.58 6.40 -51.93 -0.33 0.25 16
29 H 0.06 0.97 6.86 -51.93 -0.36 0.61 16
30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.06 0.74 6.46 -51.93 -0.34 0.40 16
32 H 0.06 0.91 6.86 -51.93 -0.36 0.55 16
33 H 0.05 0.58 6.46 -51.93 -0.34 0.24 16
34 H 0.03 0.50 6.40 -51.93 -0.33 0.16 16
35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.36 8.09 3.22 -40.82 -0.13 7.96 16
37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16
39 H 0.08 0.74 6.36 -51.92 -0.33 0.41 16
40 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16
41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.09 1.01 7.04 -51.93 -0.37 0.65 16
43 H 0.10 0.56 6.73 -51.93 -0.35 0.21 16
44 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16
45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
46 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
49 H 0.08 0.51 4.39 -51.92 -0.23 0.28 16
50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
51 H 0.09 0.87 6.36 -51.93 -0.33 0.54 16
52 H 0.07 0.70 6.51 -51.93 -0.34 0.36 16
LS Contribution 379.00 15.07 5.71 5.71
Total: -1.00 -34.43 379.00 -8.84 -43.27
By element:
Atomic # 1 Polarization: 13.34 SS G_CDS: -8.66 Total: 4.69 kcal
Atomic # 6 Polarization: -4.46 SS G_CDS: -0.36 Total: -4.82 kcal
Atomic # 7 Polarization: -52.37 SS G_CDS: -0.03 Total: -52.40 kcal
Atomic # 8 Polarization: -12.82 SS G_CDS: -0.80 Total: -13.61 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.16 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -34.43 -8.84 -43.27 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101506423.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.640 kcal
(2) G-P(sol) polarization free energy of solvation -34.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.067 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds