Wall clock time and date at job start Tue Mar 31 2020 13:57:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52997 * 109.47106 * 2 1
4 4 C 1.53005 * 109.46578 * 240.00314 * 2 1 3
5 5 N 1.46501 * 109.46932 * 60.00467 * 4 2 1
6 6 C 1.36935 * 119.99477 * 180.02562 * 5 4 2
7 7 H 1.08004 * 120.00661 * 359.97438 * 6 5 4
8 8 C 1.38821 * 119.99917 * 179.97438 * 6 5 4
9 9 N 1.31618 * 119.99829 * 179.97438 * 8 6 5
10 10 Si 1.86799 * 119.99868 * 359.97438 * 8 6 5
11 11 H 1.48498 * 109.46948 * 90.00301 * 10 8 6
12 12 H 1.48495 * 109.47122 * 210.00169 * 10 8 6
13 13 H 1.48504 * 109.47004 * 330.00477 * 10 8 6
14 14 C 1.53000 * 109.47236 * 120.00395 * 2 1 3
15 15 C 1.53034 * 109.45961 * 299.99774 * 14 2 1
16 16 C 1.53190 * 109.31321 * 178.62716 * 15 14 2
17 17 N 1.46922 * 108.77478 * 54.63467 * 16 15 14
18 18 C 1.34776 * 120.63250 * 126.36769 * 17 16 15
19 19 O 1.21287 * 119.99890 * 5.31296 * 18 17 16
20 20 C 1.50697 * 120.00195 * 185.31449 * 18 17 16
21 21 H 1.08996 * 110.27574 * 307.22849 * 20 18 17
22 22 C 1.54943 * 110.31172 * 69.31990 * 20 18 17
23 23 C 1.55310 * 100.98344 * 155.33759 * 22 20 18
24 24 C 1.54444 * 102.22573 * 325.92146 * 23 22 20
25 25 O 1.43237 * 107.60548 * 21.29687 * 24 23 22
26 26 C 1.46924 * 118.73787 * 306.64526 * 17 16 15
27 27 C 1.52762 * 109.00891 * 53.31169 * 26 17 16
28 28 H 1.09002 * 109.46632 * 299.99803 * 1 2 3
29 29 H 1.09000 * 109.47145 * 59.99489 * 1 2 3
30 30 H 1.08994 * 109.47561 * 179.97438 * 1 2 3
31 31 H 1.09000 * 109.47433 * 180.02562 * 3 2 1
32 32 H 1.09000 * 109.47535 * 300.00272 * 3 2 1
33 33 H 1.09002 * 109.47214 * 60.00554 * 3 2 1
34 34 H 1.09000 * 109.46463 * 179.97438 * 4 2 1
35 35 H 1.08994 * 109.46920 * 300.00081 * 4 2 1
36 36 H 0.96996 * 120.00507 * 359.97438 * 5 4 2
37 37 H 0.97001 * 119.99538 * 179.97438 * 9 8 6
38 38 H 1.08998 * 109.45526 * 59.97201 * 14 2 1
39 39 H 1.09008 * 109.49911 * 58.67515 * 15 14 2
40 40 H 1.09000 * 109.52882 * 298.60002 * 15 14 2
41 41 H 1.09003 * 109.58632 * 294.84706 * 16 15 14
42 42 H 1.08999 * 109.70434 * 174.49327 * 16 15 14
43 43 H 1.08998 * 111.12634 * 273.27895 * 22 20 18
44 44 H 1.09001 * 111.12328 * 37.40390 * 22 20 18
45 45 H 1.09001 * 110.84665 * 84.07602 * 23 22 20
46 46 H 1.08998 * 110.84852 * 207.70014 * 23 22 20
47 47 H 1.08997 * 109.78871 * 261.79006 * 24 23 22
48 48 H 1.09002 * 109.92432 * 140.87594 * 24 23 22
49 49 H 1.09009 * 109.58908 * 173.14408 * 26 17 16
50 50 H 1.09001 * 109.58821 * 293.56670 * 26 17 16
51 51 H 1.08999 * 109.56283 * 185.55456 * 27 26 17
52 52 H 1.08996 * 109.36307 * 65.50038 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7212 -1.2494
5 7 1.5516 -0.0304 -2.4454
6 6 1.8819 -0.4986 -3.6892
7 1 2.5027 -1.3768 -3.7884
8 6 1.4188 0.1556 -4.8226
9 7 1.7367 -0.2940 -6.0180
10 14 0.3444 1.6741 -4.6511
11 1 1.2027 2.8851 -4.6059
12 1 -0.5762 1.7629 -5.8128
13 1 -0.4472 1.5814 -3.3980
14 6 2.0401 -0.7213 1.2492
15 6 1.5299 0.0002 2.4986
16 6 2.0139 -0.7443 3.7468
17 7 3.4756 -0.8769 3.6812
18 6 4.2497 -0.4574 4.7016
19 8 3.7383 -0.0541 5.7247
20 6 5.7507 -0.4892 4.5713
21 1 6.0827 -1.4827 4.2699
22 6 6.2241 0.5704 3.5447
23 6 7.6790 0.8206 4.0272
24 6 7.5486 0.6579 5.5575
25 8 6.3671 -0.1107 5.8124
26 6 4.0779 -1.4700 2.4795
27 6 3.5704 -0.7223 1.2478
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 3.1300 1.4425 -0.0005
32 1 1.6767 1.9564 -0.8899
33 1 1.6768 1.9563 0.8900
34 1 3.1299 -0.7208 -1.2496
35 1 1.6765 -1.7488 -1.2494
36 1 0.9937 0.7580 -2.3564
37 1 1.4128 0.1629 -6.8100
38 1 1.6762 -1.7488 1.2491
39 1 0.4400 0.0211 2.4871
40 1 1.9131 1.0206 2.5121
41 1 1.5584 -1.7340 3.7816
42 1 1.7376 -0.1834 4.6396
43 1 6.2098 0.1694 2.5313
44 1 5.6258 1.4789 3.6137
45 1 8.3582 0.0745 3.6145
46 1 8.0052 1.8283 3.7699
47 1 7.4608 1.6378 6.0266
48 1 8.4211 0.1364 5.9512
49 1 5.1633 -1.3856 2.5350
50 1 3.7942 -2.5201 2.4087
51 1 3.9331 -1.2158 0.3461
52 1 3.9350 0.3045 1.2727
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001101506423.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:57:07
Heat of formation + Delta-G solvation = -95.667151 kcal
Electronic energy + Delta-G solvation = -29425.165013 eV
Core-core repulsion = 25616.736508 eV
Total energy + Delta-G solvation = -3808.428506 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.78598 -40.44991 -39.28829 -37.45864 -35.59224 -33.62017 -33.08223 -32.31740
-31.88403 -30.33291 -28.18277 -27.73571 -26.53392 -24.92792 -23.78537 -23.63655
-22.67715 -21.99100 -20.34809 -19.85483 -19.12863 -18.60978 -17.57130 -17.01980
-16.70068 -16.45911 -16.19969 -16.04309 -15.60439 -15.53269 -15.26433 -15.13755
-14.82529 -14.65646 -14.32872 -14.19751 -14.09230 -13.89807 -13.47943 -13.26523
-13.14910 -13.00589 -12.84128 -12.76028 -12.69843 -12.64894 -12.37393 -12.20091
-12.13140 -11.92797 -11.85569 -11.82219 -11.71628 -11.28019 -11.16330 -10.99169
-10.97160 -10.83020 -10.38587 -9.66750 -9.21417 -8.00820 -5.31362 1.36227
1.38793 1.46179 1.47549 1.77799 2.48716 2.88553 3.30896 3.31567
3.53682 3.58485 3.74088 3.80440 3.87948 3.99218 4.05870 4.10958
4.15238 4.20171 4.27498 4.30795 4.37758 4.40278 4.48689 4.62096
4.70847 4.74461 4.80610 4.83926 4.86607 4.90224 4.93499 4.96188
4.97477 5.00798 5.05409 5.10876 5.17261 5.17718 5.22717 5.26073
5.35278 5.40666 5.50194 5.62399 5.69019 5.80045 5.90582 6.24517
6.34898 7.09277 7.12161 7.91219 8.08499 9.21239
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.019608 B = 0.002876 C = 0.002684
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.662209 B = 9733.778533 C =10430.199640
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.059 4.059
3 C -0.138 4.138
4 C 0.163 3.837
5 N -0.755 5.755
6 C -0.225 4.225
7 H 0.058 0.942
8 C -0.065 4.065
9 N -0.986 5.986
10 Si 0.947 3.053
11 H -0.278 1.278
12 H -0.298 1.298
13 H -0.254 1.254
14 C -0.064 4.064
15 C -0.122 4.122
16 C 0.112 3.888
17 N -0.600 5.600
18 C 0.509 3.491
19 O -0.580 6.580
20 C 0.062 3.938
21 H 0.120 0.880
22 C -0.143 4.143
23 C -0.145 4.145
24 C 0.039 3.961
25 O -0.393 6.393
26 C 0.102 3.898
27 C -0.135 4.135
28 H 0.074 0.926
29 H 0.032 0.968
30 H 0.055 0.945
31 H 0.061 0.939
32 H 0.032 0.968
33 H 0.068 0.932
34 H 0.033 0.967
35 H 0.018 0.982
36 H 0.365 0.635
37 H 0.256 0.744
38 H 0.079 0.921
39 H 0.088 0.912
40 H 0.064 0.936
41 H 0.080 0.920
42 H 0.072 0.928
43 H 0.117 0.883
44 H 0.069 0.931
45 H 0.101 0.899
46 H 0.099 0.901
47 H 0.067 0.933
48 H 0.087 0.913
49 H 0.105 0.895
50 H 0.086 0.914
51 H 0.084 0.916
52 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.020 0.475 23.214 24.910
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.060 4.060
3 C -0.195 4.195
4 C 0.037 3.963
5 N -0.402 5.402
6 C -0.356 4.356
7 H 0.076 0.924
8 C -0.256 4.256
9 N -0.637 5.637
10 Si 0.775 3.225
11 H -0.205 1.205
12 H -0.225 1.225
13 H -0.178 1.178
14 C -0.083 4.083
15 C -0.159 4.159
16 C -0.010 4.010
17 N -0.334 5.334
18 C 0.297 3.703
19 O -0.459 6.459
20 C 0.002 3.998
21 H 0.137 0.863
22 C -0.180 4.180
23 C -0.183 4.183
24 C -0.037 4.037
25 O -0.312 6.312
26 C -0.019 4.019
27 C -0.173 4.173
28 H 0.093 0.907
29 H 0.051 0.949
30 H 0.074 0.926
31 H 0.080 0.920
32 H 0.051 0.949
33 H 0.087 0.913
34 H 0.051 0.949
35 H 0.036 0.964
36 H 0.199 0.801
37 H 0.065 0.935
38 H 0.097 0.903
39 H 0.106 0.894
40 H 0.083 0.917
41 H 0.098 0.902
42 H 0.091 0.909
43 H 0.135 0.865
44 H 0.088 0.912
45 H 0.120 0.880
46 H 0.118 0.882
47 H 0.085 0.915
48 H 0.105 0.895
49 H 0.123 0.877
50 H 0.105 0.895
51 H 0.103 0.897
52 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 8.782 0.485 23.838 25.409
hybrid contribution -0.785 0.891 -0.820 1.443
sum 7.997 1.376 23.018 24.407
Atomic orbital electron populations
1.21882 0.94732 1.01870 1.01221 1.20654 0.95639 0.95732 0.93960
1.21900 1.01400 0.95336 1.00910 1.20924 0.96609 0.94051 0.84687
1.42815 1.61948 1.33512 1.01882 1.19074 1.24289 1.08431 0.83837
0.92372 1.25434 1.02868 1.02567 0.94769 1.69875 1.52153 1.44023
0.97667 0.85527 0.79181 0.80391 0.77427 1.20457 1.22477 1.17846
1.21002 0.95430 0.99512 0.92344 1.22003 1.01827 0.99337 0.92780
1.21639 0.79000 1.01447 0.98879 1.48142 1.07131 1.60476 1.17633
1.20997 0.89984 0.76569 0.82707 1.90674 1.76032 1.48706 1.30512
1.23010 0.89047 1.01692 0.86061 0.86306 1.23333 0.96906 0.98069
0.99730 1.23160 0.96213 1.05164 0.93725 1.23433 0.87178 0.95918
0.97178 1.88487 1.41331 1.73003 1.28370 1.22018 0.99403 0.97876
0.82620 1.22042 0.95469 1.01865 0.97917 0.90686 0.94872 0.92614
0.92003 0.94879 0.91287 0.94877 0.96376 0.80110 0.93492 0.90292
0.89404 0.91684 0.90184 0.90923 0.86460 0.91197 0.88015 0.88249
0.91472 0.89451 0.87652 0.89543 0.89709 0.90954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.55 7.95 71.98 0.57 -2.97 16
2 C -0.06 -1.48 0.33 -52.18 -0.02 -1.50 16
3 C -0.14 -3.43 7.60 71.98 0.55 -2.89 16
4 C 0.16 5.56 4.80 86.38 0.41 5.97 16
5 N -0.76 -33.69 4.81 -343.44 -1.65 -35.34 16
6 C -0.23 -12.55 10.47 84.04 0.88 -11.67 16
7 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16
8 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16
9 N -0.99 -62.84 13.97 21.65 0.30 -62.54 16
10 Si 0.95 45.18 27.74 68.60 1.90 47.08 16
11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
12 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16
13 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16
14 C -0.06 -1.16 1.51 -10.77 -0.02 -1.18 16
15 C -0.12 -2.04 4.65 30.67 0.14 -1.90 16
16 C 0.11 2.03 6.42 86.36 0.55 2.59 16
17 N -0.60 -10.78 2.98 -819.74 -2.44 -13.22 16
18 C 0.51 11.88 7.06 87.66 0.62 12.50 16
19 O -0.58 -19.28 15.99 15.40 0.25 -19.03 16
20 C 0.06 1.08 2.89 30.51 0.09 1.17 16
21 H 0.12 1.44 7.36 -2.39 -0.02 1.42 16
22 C -0.14 -1.72 5.97 32.05 0.19 -1.53 16
23 C -0.15 -1.31 7.03 31.88 0.22 -1.08 16
24 C 0.04 0.55 7.80 72.47 0.56 1.11 16
25 O -0.39 -8.92 10.61 -130.53 -1.38 -10.31 16
26 C 0.10 1.28 5.95 86.22 0.51 1.80 16
27 C -0.14 -2.12 4.63 30.53 0.14 -1.98 16
28 H 0.07 1.51 6.40 -2.39 -0.02 1.50 16
29 H 0.03 1.01 6.86 -2.39 -0.02 0.99 16
30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.06 1.46 6.46 -2.39 -0.02 1.44 16
32 H 0.03 0.98 6.86 -2.39 -0.02 0.96 16
33 H 0.07 1.43 6.46 -2.39 -0.02 1.42 16
34 H 0.03 1.12 6.40 -2.39 -0.02 1.10 16
35 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16
36 H 0.36 15.80 3.22 -92.71 -0.30 15.50 16
37 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16
38 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16
39 H 0.09 1.35 6.36 -2.38 -0.02 1.34 16
40 H 0.06 1.19 6.51 -2.39 -0.02 1.17 16
41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
42 H 0.07 1.60 7.04 -2.39 -0.02 1.59 16
43 H 0.12 0.91 6.73 -2.39 -0.02 0.89 16
44 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16
45 H 0.10 0.55 8.14 -2.39 -0.02 0.54 16
46 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16
47 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16
48 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
49 H 0.11 0.87 4.39 -2.38 -0.01 0.86 16
50 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
51 H 0.08 1.44 6.36 -2.39 -0.02 1.42 16
52 H 0.07 1.16 6.51 -2.39 -0.02 1.15 16
Total: -1.00 -77.22 379.00 3.42 -73.80
By element:
Atomic # 1 Polarization: 23.89 SS G_CDS: 0.56 Total: 24.45 kcal
Atomic # 6 Polarization: -10.78 SS G_CDS: 5.89 Total: -4.90 kcal
Atomic # 7 Polarization: -107.31 SS G_CDS: -3.79 Total: -111.10 kcal
Atomic # 8 Polarization: -28.20 SS G_CDS: -1.14 Total: -29.34 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal
Total: -77.22 3.42 -73.80 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101506423.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.865 kcal
(2) G-P(sol) polarization free energy of solvation -77.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.802 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.667 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds