Wall clock time and date at job start Tue Mar 31 2020 14:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47455 * 2 1 4 4 C 1.53001 * 109.47271 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.42898 * 113.99927 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47419 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99859 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00312 * 179.97438 * 7 6 5 10 10 C 1.48119 * 127.84156 * 0.02562 * 9 7 6 11 11 C 1.54331 * 104.69230 * 140.22054 * 10 9 7 12 12 H 1.09001 * 112.59821 * 262.02861 * 11 10 9 13 13 C 1.54169 * 109.65500 * 137.80055 * 11 10 9 14 14 C 1.54843 * 104.32556 * 223.42034 * 13 11 10 15 15 C 1.54840 * 102.73500 * 38.18879 * 14 13 11 16 16 C 1.54166 * 104.32903 * 321.81229 * 15 14 13 17 17 C 1.53005 * 111.81953 * 261.25095 * 16 15 14 18 18 N 1.46505 * 109.46904 * 298.97995 * 17 16 15 19 19 C 1.36931 * 119.99788 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.50619 * 127.74573 * 180.30233 * 9 7 6 28 28 H 1.09000 * 109.46842 * 59.99496 * 1 2 3 29 29 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.00260 * 1 2 3 31 31 H 1.08998 * 109.46641 * 240.00273 * 2 1 3 32 32 H 1.09001 * 109.47359 * 120.00417 * 2 1 3 33 33 H 1.09000 * 109.47337 * 60.00078 * 3 2 1 34 34 H 1.09000 * 109.47507 * 300.00097 * 3 2 1 35 35 H 1.08990 * 109.47330 * 59.99616 * 4 3 2 36 36 H 1.09005 * 109.46557 * 299.99796 * 4 3 2 37 37 H 1.09001 * 109.47567 * 59.99847 * 6 5 4 38 38 H 1.09005 * 109.47396 * 299.99941 * 6 5 4 39 39 H 1.09005 * 110.39470 * 21.42104 * 10 9 7 40 40 H 1.08996 * 110.39635 * 259.02325 * 10 9 7 41 41 H 1.08999 * 110.46159 * 104.70976 * 13 11 10 42 42 H 1.08999 * 110.56878 * 342.18935 * 13 11 10 43 43 H 1.08994 * 110.75931 * 279.87537 * 14 13 11 44 44 H 1.09005 * 110.91542 * 156.56829 * 14 13 11 45 45 H 1.08998 * 110.46422 * 203.09931 * 15 14 13 46 46 H 1.08999 * 110.46501 * 80.52011 * 15 14 13 47 47 H 1.09003 * 109.46946 * 178.98754 * 17 16 15 48 48 H 1.08993 * 109.47679 * 58.98297 * 17 16 15 49 49 H 0.97000 * 119.99792 * 0.02562 * 18 17 16 50 50 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 51 51 H 1.09004 * 110.78240 * 101.42763 * 27 9 7 52 52 H 1.09001 * 111.15169 * 338.24417 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0000 7 6 5.8597 4.3584 0.0000 8 8 5.0013 5.2152 -0.0005 9 7 7.1612 4.7085 0.0006 10 6 8.3425 3.8150 0.0007 11 6 9.3471 4.4942 -0.9539 12 1 9.3266 4.0670 -1.9565 13 6 10.7640 4.4249 -0.3503 14 6 11.3534 5.8360 -0.5935 15 6 10.1357 6.7611 -0.3507 16 6 8.9447 5.9902 -0.9541 17 6 8.5978 6.4882 -2.3586 18 7 8.2201 7.9023 -2.2959 19 6 7.8660 8.5677 -3.4391 20 1 7.8647 8.0500 -4.3870 21 6 7.5025 9.9061 -3.3788 22 7 7.5035 10.5368 -2.2237 23 14 7.0120 10.8118 -4.9372 24 1 7.0936 9.8851 -6.0948 25 1 5.6209 11.3134 -4.8012 26 1 7.9321 11.9569 -5.1546 27 6 7.7422 6.0981 0.0070 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 3.9330 0.9287 -0.8907 36 1 3.9337 0.9284 0.8892 37 1 5.8738 2.4193 -0.8902 38 1 5.8738 2.4185 0.8898 39 1 8.0718 2.8274 -0.3728 40 1 8.7625 3.7407 1.0038 41 1 11.3599 3.6696 -0.8626 42 1 10.7155 4.2110 0.7174 43 1 11.7141 5.9328 -1.6175 44 1 12.1508 6.0525 0.1175 45 1 10.2723 7.7133 -0.8633 46 1 9.9849 6.9202 0.7170 47 1 7.7651 5.9070 -2.7548 48 1 9.4642 6.3721 -3.0097 49 1 8.2208 8.3672 -1.4446 50 1 7.2499 11.4722 -2.1816 51 1 8.0786 6.3721 1.0070 52 1 7.0225 6.8271 -0.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112289284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:28 Heat of formation + Delta-G solvation = -81.077870 kcal Electronic energy + Delta-G solvation = -28324.181528 eV Core-core repulsion = 24516.385662 eV Total energy + Delta-G solvation = -3807.795867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40660 -38.91630 -37.59905 -35.15394 -34.75365 -34.26431 -31.64266 -30.20410 -29.72678 -29.20931 -27.47782 -25.50334 -25.21369 -23.59181 -23.35125 -22.12656 -21.41761 -20.33951 -19.12661 -18.40979 -17.42689 -16.97449 -16.75572 -16.16885 -15.80816 -15.62597 -15.10912 -14.97759 -14.56772 -14.34106 -14.07942 -13.73966 -13.36248 -13.29971 -13.23729 -12.99484 -12.88540 -12.61385 -12.33829 -12.11088 -11.86242 -11.75523 -11.47236 -11.41060 -11.22191 -11.16143 -10.94676 -10.94095 -10.80981 -10.75523 -10.54867 -10.51722 -10.32543 -10.17873 -9.89980 -9.86451 -9.60020 -9.48862 -8.81930 -8.54069 -6.85424 -5.70458 -2.98509 2.67556 2.79665 3.48371 3.53838 3.56143 3.70333 4.37414 4.47384 4.60583 4.64282 4.69952 4.75170 4.79697 4.84852 4.92229 4.95133 5.07627 5.11219 5.16945 5.29540 5.31166 5.35648 5.42513 5.48779 5.51351 5.55883 5.57358 5.59419 5.65962 5.67684 5.80820 5.81593 5.88603 5.94183 5.95344 6.01853 6.09420 6.17214 6.19290 6.24718 6.43448 6.49472 6.50471 6.73609 6.79742 6.86884 6.93388 7.71634 7.76493 8.36203 8.48274 9.59768 10.16575 10.51365 11.52534 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.003040 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.020783 B = 9208.350290 C =11471.749819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.363 6.363 6 C 0.052 3.948 7 C 0.530 3.470 8 O -0.512 6.512 9 N -0.626 5.626 10 C 0.108 3.892 11 C -0.098 4.098 12 H 0.089 0.911 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.115 4.115 16 C -0.075 4.075 17 C 0.174 3.826 18 N -0.729 5.729 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.119 3.881 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.017 0.983 48 H 0.022 0.978 49 H 0.384 0.616 50 H 0.254 0.746 51 H 0.071 0.929 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.705 -23.891 8.265 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.281 6.281 6 C -0.028 4.028 7 C 0.317 3.683 8 O -0.386 6.386 9 N -0.363 5.363 10 C -0.016 4.016 11 C -0.118 4.118 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.076 4.076 17 C 0.046 3.954 18 N -0.373 5.373 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.002 4.002 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.035 0.965 48 H 0.040 0.960 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.089 0.911 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.093 -23.265 8.092 24.633 hybrid contribution -0.029 0.389 -0.599 0.715 sum -0.122 -22.876 7.493 24.072 Atomic orbital electron populations 1.21757 0.95363 1.01644 1.02220 1.21437 0.96336 0.95978 1.02087 1.21552 0.93178 0.97188 1.03898 1.22589 0.95522 0.83462 1.00053 1.88030 1.18598 1.26068 1.95372 1.22142 0.83685 0.94882 1.02085 1.19751 0.81077 0.90257 0.77223 1.90783 1.48148 1.51700 1.47986 1.49553 1.03886 1.09234 1.73611 1.22532 0.85939 0.93618 0.99481 1.22720 0.94270 0.95634 0.99157 0.89306 1.22425 0.94776 0.97757 1.00305 1.22473 0.97509 0.94272 1.01618 1.22483 0.92954 0.99600 1.00209 1.22263 0.94664 0.93645 0.97042 1.20519 0.96532 0.87109 0.91215 1.42361 1.81405 1.05311 1.08264 1.19228 1.37261 0.92649 0.87632 0.91298 1.24719 1.02515 0.96933 0.96765 1.69660 1.54934 1.10430 1.23057 0.86134 0.77871 0.79691 0.82603 1.20642 1.21876 1.21948 1.23101 0.95361 0.83261 0.98460 0.92489 0.92660 0.92545 0.91853 0.91916 0.90905 0.90802 0.93229 0.93339 0.90531 0.90687 0.90947 0.90865 0.91789 0.91526 0.91363 0.91844 0.89637 0.91823 0.96475 0.96043 0.78144 0.93597 0.91132 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.82 5.93 -26.73 -0.16 -0.98 16 3 C -0.12 -1.10 5.58 -26.73 -0.15 -1.25 16 4 C 0.06 0.59 5.94 37.16 0.22 0.81 16 5 O -0.36 -5.17 9.88 -55.14 -0.54 -5.71 16 6 C 0.05 0.64 5.39 36.01 0.19 0.83 16 7 C 0.53 8.99 8.00 -10.99 -0.09 8.91 16 8 O -0.51 -11.55 16.83 -14.35 -0.24 -11.79 16 9 N -0.63 -9.39 3.36 -167.31 -0.56 -9.95 16 10 C 0.11 1.12 6.48 -2.45 -0.02 1.11 16 11 C -0.10 -1.14 3.52 -88.30 -0.31 -1.45 16 12 H 0.09 1.04 7.88 -51.93 -0.41 0.63 16 13 C -0.11 -1.10 6.38 -25.15 -0.16 -1.26 16 14 C -0.12 -1.40 6.90 -24.79 -0.17 -1.57 16 15 C -0.11 -1.67 5.68 -25.15 -0.14 -1.82 16 16 C -0.07 -1.17 0.61 -152.19 -0.09 -1.26 16 17 C 0.17 3.54 5.20 -4.04 -0.02 3.52 16 18 N -0.73 -18.57 4.59 -59.90 -0.27 -18.84 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 23 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 C 0.12 2.02 6.08 -1.04 -0.01 2.02 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.58 7.30 -51.93 -0.38 0.20 16 40 H 0.07 0.65 7.26 -51.93 -0.38 0.27 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.56 7.25 -51.93 -0.38 0.18 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.52 7.16 -51.93 -0.37 1.15 16 46 H 0.06 0.86 7.19 -51.93 -0.37 0.48 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.38 10.22 6.60 -40.82 -0.27 9.95 16 50 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 51 H 0.07 1.09 7.20 -51.93 -0.37 0.71 16 52 H 0.10 2.20 6.98 -51.93 -0.36 1.84 16 LS Contribution 406.74 15.07 6.13 6.13 Total: -1.00 -35.32 406.74 -10.17 -45.48 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -9.59 Total: 5.07 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.78 Total: -0.45 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.11 Total: -56.85 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.79 Total: -17.50 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.32 -10.17 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112289284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.596 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds