Wall clock time and date at job start Tue Mar 31 2020 14:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47455 * 2 1 4 4 C 1.53001 * 109.47271 * 180.02562 * 3 2 1 5 5 O 1.42898 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.42898 * 113.99927 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47419 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99859 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00312 * 179.97438 * 7 6 5 10 10 C 1.48119 * 127.84156 * 0.02562 * 9 7 6 11 11 C 1.54331 * 104.69230 * 140.22054 * 10 9 7 12 12 H 1.09001 * 112.59821 * 262.02861 * 11 10 9 13 13 C 1.54169 * 109.65500 * 137.80055 * 11 10 9 14 14 C 1.54843 * 104.32556 * 223.42034 * 13 11 10 15 15 C 1.54840 * 102.73500 * 38.18879 * 14 13 11 16 16 C 1.54166 * 104.32903 * 321.81229 * 15 14 13 17 17 C 1.53005 * 111.81953 * 261.25095 * 16 15 14 18 18 N 1.46505 * 109.46904 * 298.97995 * 17 16 15 19 19 C 1.36931 * 119.99788 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48508 * 109.46872 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 119.99997 * 23 21 19 26 26 H 1.48498 * 109.47018 * 240.00044 * 23 21 19 27 27 C 1.50619 * 127.74573 * 180.30233 * 9 7 6 28 28 H 1.09000 * 109.46842 * 59.99496 * 1 2 3 29 29 H 1.08999 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46784 * 300.00260 * 1 2 3 31 31 H 1.08998 * 109.46641 * 240.00273 * 2 1 3 32 32 H 1.09001 * 109.47359 * 120.00417 * 2 1 3 33 33 H 1.09000 * 109.47337 * 60.00078 * 3 2 1 34 34 H 1.09000 * 109.47507 * 300.00097 * 3 2 1 35 35 H 1.08990 * 109.47330 * 59.99616 * 4 3 2 36 36 H 1.09005 * 109.46557 * 299.99796 * 4 3 2 37 37 H 1.09001 * 109.47567 * 59.99847 * 6 5 4 38 38 H 1.09005 * 109.47396 * 299.99941 * 6 5 4 39 39 H 1.09005 * 110.39470 * 21.42104 * 10 9 7 40 40 H 1.08996 * 110.39635 * 259.02325 * 10 9 7 41 41 H 1.08999 * 110.46159 * 104.70976 * 13 11 10 42 42 H 1.08999 * 110.56878 * 342.18935 * 13 11 10 43 43 H 1.08994 * 110.75931 * 279.87537 * 14 13 11 44 44 H 1.09005 * 110.91542 * 156.56829 * 14 13 11 45 45 H 1.08998 * 110.46422 * 203.09931 * 15 14 13 46 46 H 1.08999 * 110.46501 * 80.52011 * 15 14 13 47 47 H 1.09003 * 109.46946 * 178.98754 * 17 16 15 48 48 H 1.08993 * 109.47679 * 58.98297 * 17 16 15 49 49 H 0.97000 * 119.99792 * 0.02562 * 18 17 16 50 50 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 51 51 H 1.09004 * 110.78240 * 101.42763 * 27 9 7 52 52 H 1.09001 * 111.15169 * 338.24417 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7896 0.0000 6 6 5.4710 2.9024 0.0000 7 6 5.8597 4.3584 0.0000 8 8 5.0013 5.2152 -0.0005 9 7 7.1612 4.7085 0.0006 10 6 8.3425 3.8150 0.0007 11 6 9.3471 4.4942 -0.9539 12 1 9.3266 4.0670 -1.9565 13 6 10.7640 4.4249 -0.3503 14 6 11.3534 5.8360 -0.5935 15 6 10.1357 6.7611 -0.3507 16 6 8.9447 5.9902 -0.9541 17 6 8.5978 6.4882 -2.3586 18 7 8.2201 7.9023 -2.2959 19 6 7.8660 8.5677 -3.4391 20 1 7.8647 8.0500 -4.3870 21 6 7.5025 9.9061 -3.3788 22 7 7.5035 10.5368 -2.2237 23 14 7.0120 10.8118 -4.9372 24 1 7.0936 9.8851 -6.0948 25 1 5.6209 11.3134 -4.8012 26 1 7.9321 11.9569 -5.1546 27 6 7.7422 6.0981 0.0070 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6768 1.9564 -0.8900 35 1 3.9330 0.9287 -0.8907 36 1 3.9337 0.9284 0.8892 37 1 5.8738 2.4193 -0.8902 38 1 5.8738 2.4185 0.8898 39 1 8.0718 2.8274 -0.3728 40 1 8.7625 3.7407 1.0038 41 1 11.3599 3.6696 -0.8626 42 1 10.7155 4.2110 0.7174 43 1 11.7141 5.9328 -1.6175 44 1 12.1508 6.0525 0.1175 45 1 10.2723 7.7133 -0.8633 46 1 9.9849 6.9202 0.7170 47 1 7.7651 5.9070 -2.7548 48 1 9.4642 6.3721 -3.0097 49 1 8.2208 8.3672 -1.4446 50 1 7.2499 11.4722 -2.1816 51 1 8.0786 6.3721 1.0070 52 1 7.0225 6.8271 -0.3655 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112289284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:27 Heat of formation + Delta-G solvation = -103.788016 kcal Electronic energy + Delta-G solvation = -28325.166314 eV Core-core repulsion = 24516.385662 eV Total energy + Delta-G solvation = -3808.780653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58479 -40.05509 -38.64130 -36.48062 -35.81807 -35.63552 -33.47793 -31.35337 -30.94211 -30.22716 -28.63650 -26.90647 -26.44028 -25.14665 -24.17995 -23.53140 -22.04919 -21.37252 -20.27756 -19.81800 -19.15970 -18.21196 -17.61676 -17.28012 -16.85367 -16.69767 -16.62836 -16.18250 -15.98276 -15.34825 -15.21985 -15.12589 -14.82863 -14.52376 -14.44502 -14.11208 -13.99473 -13.69599 -13.37598 -13.24569 -13.10682 -12.92663 -12.83747 -12.68735 -12.43258 -12.18032 -12.15452 -11.98519 -11.90028 -11.84443 -11.77128 -11.72190 -11.53798 -11.43158 -11.38146 -11.35123 -10.99090 -10.76089 -10.68852 -9.77791 -9.01919 -7.98692 -5.26703 1.41167 1.43869 1.53080 1.54172 1.61595 2.51899 2.83224 3.32195 3.34893 3.46275 3.68923 3.71526 3.97863 4.05362 4.13353 4.16339 4.18932 4.22097 4.22857 4.27910 4.34165 4.42105 4.45260 4.45698 4.48380 4.56647 4.68056 4.71382 4.75248 4.88218 4.89920 4.90076 4.94377 4.97462 5.01915 5.04316 5.08937 5.22821 5.22841 5.26098 5.32838 5.34078 5.41655 5.43903 5.46283 5.50942 5.60313 6.11864 6.23825 6.57096 7.12509 7.29938 8.06319 8.29573 9.25168 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009871 B = 0.003040 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.020783 B = 9208.350290 C =11471.749819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.123 4.123 4 C 0.057 3.943 5 O -0.407 6.407 6 C 0.061 3.939 7 C 0.515 3.485 8 O -0.589 6.589 9 N -0.624 5.624 10 C 0.106 3.894 11 C -0.092 4.092 12 H 0.092 0.908 13 C -0.101 4.101 14 C -0.117 4.117 15 C -0.114 4.114 16 C -0.071 4.071 17 C 0.175 3.825 18 N -0.739 5.739 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.973 3.027 24 H -0.267 1.267 25 H -0.297 1.297 26 H -0.287 1.287 27 C 0.118 3.882 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.042 0.958 46 H 0.075 0.925 47 H -0.002 1.002 48 H 0.026 0.974 49 H 0.375 0.625 50 H 0.251 0.749 51 H 0.086 0.914 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -28.010 8.713 29.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.160 4.160 4 C -0.019 4.019 5 O -0.326 6.326 6 C -0.018 4.018 7 C 0.305 3.695 8 O -0.469 6.469 9 N -0.358 5.358 10 C -0.015 4.015 11 C -0.112 4.112 12 H 0.110 0.890 13 C -0.138 4.138 14 C -0.154 4.154 15 C -0.152 4.152 16 C -0.072 4.072 17 C 0.048 3.952 18 N -0.382 5.382 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.191 1.191 25 H -0.224 1.224 26 H -0.214 1.214 27 C -0.004 4.004 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.075 0.925 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.016 0.984 48 H 0.044 0.956 49 H 0.207 0.793 50 H 0.060 0.940 51 H 0.104 0.896 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.982 -27.465 8.523 28.825 hybrid contribution -0.657 1.670 -0.746 1.944 sum 1.325 -25.795 7.777 26.975 Atomic orbital electron populations 1.21785 0.95418 1.02324 1.01722 1.21406 0.96269 0.94289 1.03180 1.21589 0.93563 0.98581 1.02313 1.22813 0.95305 0.81793 1.01991 1.87994 1.19880 1.28936 1.95793 1.22232 0.83255 0.91071 1.05257 1.20873 0.80825 0.92077 0.75709 1.90742 1.50382 1.54143 1.51651 1.49684 1.04831 1.09129 1.72188 1.22932 0.83424 0.94040 1.01067 1.22757 0.96329 0.91843 1.00273 0.88987 1.22403 0.92770 0.96646 1.01983 1.22461 0.96461 0.94919 1.01603 1.22433 0.94293 0.98318 1.00168 1.22152 0.94442 0.97125 0.93482 1.20625 0.95474 0.84247 0.94807 1.42547 1.81284 1.07328 1.07034 1.19623 1.36218 0.93127 0.88637 0.91113 1.25577 1.03409 0.97962 0.99953 1.69823 1.56457 1.10439 1.25181 0.85079 0.76930 0.78487 0.79320 1.19095 1.22396 1.21385 1.22923 0.94462 0.83788 0.99268 0.93206 0.91342 0.92932 0.90895 0.90549 0.92266 0.92741 0.91487 0.90906 0.87580 0.86568 0.87107 0.87762 0.89159 0.89090 0.92459 0.89893 0.93906 0.90650 0.98445 0.95599 0.79280 0.94014 0.89561 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.91 71.98 0.71 -1.15 16 2 C -0.11 -1.35 5.93 30.59 0.18 -1.17 16 3 C -0.12 -2.19 5.58 30.59 0.17 -2.02 16 4 C 0.06 0.98 5.94 71.98 0.43 1.40 16 5 O -0.41 -11.27 9.88 -129.94 -1.28 -12.55 16 6 C 0.06 1.33 5.39 71.24 0.38 1.71 16 7 C 0.52 17.54 8.00 87.66 0.70 18.24 16 8 O -0.59 -28.37 16.83 16.01 0.27 -28.10 16 9 N -0.62 -18.07 3.36 -801.65 -2.70 -20.77 16 10 C 0.11 1.74 6.48 86.52 0.56 2.30 16 11 C -0.09 -1.84 3.52 -9.29 -0.03 -1.87 16 12 H 0.09 1.82 7.88 -2.39 -0.02 1.80 16 13 C -0.10 -1.41 6.38 31.62 0.20 -1.21 16 14 C -0.12 -2.38 6.90 31.85 0.22 -2.16 16 15 C -0.11 -3.31 5.68 31.62 0.18 -3.13 16 16 C -0.07 -2.21 0.61 -50.68 -0.03 -2.24 16 17 C 0.17 7.41 5.20 86.38 0.45 7.86 16 18 N -0.74 -39.92 4.59 -343.44 -1.58 -41.49 16 19 C -0.24 -14.56 9.99 84.04 0.84 -13.72 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 22 N -0.97 -62.52 13.06 21.65 0.28 -62.23 16 23 Si 0.97 48.99 29.55 68.60 2.03 51.01 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 C 0.12 4.15 6.08 86.02 0.52 4.67 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.11 1.67 7.95 -2.39 -0.02 1.66 16 38 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.11 1.06 7.30 -2.38 -0.02 1.04 16 40 H 0.10 1.18 7.26 -2.39 -0.02 1.16 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 0.92 7.25 -2.39 -0.02 0.91 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.04 1.60 7.16 -2.39 -0.02 1.58 16 46 H 0.07 1.98 7.19 -2.39 -0.02 1.96 16 47 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.37 21.44 6.60 -92.71 -0.61 20.83 16 50 H 0.25 15.64 8.31 -92.70 -0.77 14.87 16 51 H 0.09 2.70 7.20 -2.38 -0.02 2.69 16 52 H 0.04 1.85 6.98 -2.39 -0.02 1.84 16 Total: -1.00 -85.99 406.74 3.25 -82.74 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: 0.27 Total: 28.09 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.96 Total: 3.30 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -3.99 Total: -124.50 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.01 Total: -40.65 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 2.03 Total: 51.01 kcal Total: -85.99 3.25 -82.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112289284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.049 kcal (2) G-P(sol) polarization free energy of solvation -85.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds