Wall clock time and date at job start Tue Mar 31 2020 14:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47305 * 2 1 4 4 C 1.53003 * 109.47176 * 239.99942 * 2 1 3 5 5 O 1.42901 * 109.47220 * 120.00473 * 2 1 3 6 6 C 1.42895 * 114.00256 * 59.99662 * 5 2 1 7 7 C 1.50698 * 109.47508 * 180.02562 * 6 5 2 8 8 O 1.21282 * 120.00015 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00294 * 180.02562 * 7 6 5 10 10 C 1.48115 * 127.83997 * 359.96643 * 9 7 6 11 11 C 1.54332 * 104.69065 * 219.77196 * 10 9 7 12 12 H 1.08998 * 111.85076 * 214.54938 * 11 10 9 13 13 C 1.54160 * 108.86600 * 89.54592 * 11 10 9 14 14 C 1.54837 * 104.33343 * 271.20682 * 13 11 10 15 15 C 1.57145 * 102.91040 * 321.70558 * 14 13 11 16 16 C 1.54160 * 103.23165 * 38.20227 * 15 14 13 17 17 C 1.53005 * 111.81740 * 213.15150 * 16 15 14 18 18 N 1.46505 * 109.46904 * 298.61074 * 17 16 15 19 19 C 1.36931 * 119.99788 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 17 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.48116 * 127.84487 * 180.02562 * 9 7 6 28 28 H 1.08998 * 109.47257 * 299.99854 * 1 2 3 29 29 H 1.09005 * 109.47260 * 59.99549 * 1 2 3 30 30 H 1.08999 * 109.47438 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46871 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47399 * 300.00315 * 3 2 1 33 33 H 1.09000 * 109.46685 * 60.00406 * 3 2 1 34 34 H 1.08994 * 109.47588 * 300.00611 * 4 2 1 35 35 H 1.09005 * 109.46611 * 60.00111 * 4 2 1 36 36 H 1.09000 * 109.46984 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.46870 * 60.00095 * 6 5 2 38 38 H 1.09001 * 109.46927 * 300.00611 * 6 5 2 39 39 H 1.08993 * 110.39868 * 338.57767 * 10 9 7 40 40 H 1.08997 * 110.39259 * 100.97347 * 10 9 7 41 41 H 1.08999 * 110.46192 * 29.91385 * 13 11 10 42 42 H 1.08992 * 110.46299 * 152.49133 * 13 11 10 43 43 H 1.08994 * 110.76638 * 80.13764 * 14 13 11 44 44 H 1.09010 * 110.75988 * 203.33024 * 14 13 11 45 45 H 1.08993 * 111.52181 * 279.59202 * 15 14 13 46 46 H 1.09004 * 110.44659 * 156.29230 * 15 14 13 47 47 H 1.09003 * 109.46946 * 178.61833 * 17 16 15 48 48 H 1.08993 * 109.47679 * 58.61376 * 17 16 15 49 49 H 0.97000 * 119.99792 * 0.02562 * 18 17 16 50 50 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 51 51 H 1.09006 * 110.38979 * 21.43735 * 27 9 7 52 52 H 1.09003 * 110.48777 * 259.10493 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5846 -2.0356 1.2644 7 6 2.1410 -2.6445 2.5256 8 8 2.8311 -1.9781 3.2676 9 7 1.8725 -3.9300 2.8286 10 6 1.0578 -4.8949 2.0546 11 6 0.2636 -5.6797 3.1201 12 1 0.1177 -6.7208 2.8321 13 6 -1.0669 -4.9487 3.3887 14 6 -0.7305 -3.9427 4.5167 15 6 0.2558 -4.7564 5.4302 16 6 1.1029 -5.5500 4.4158 17 6 1.5178 -6.9158 4.9666 18 7 2.3399 -6.7298 6.1649 19 6 2.8303 -7.8189 6.8345 20 1 2.6115 -8.8150 6.4790 21 6 3.6140 -7.6426 7.9666 22 7 3.8811 -6.4287 8.3995 23 14 4.2895 -9.1282 8.8756 24 1 5.6170 -9.4892 8.3165 25 1 4.4315 -8.8036 10.3178 26 1 3.3569 -10.2727 8.7154 27 6 2.3243 -4.6982 4.0117 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.9491 -2.5916 0.4006 38 1 0.4958 -2.0777 1.2906 39 1 0.3777 -4.3674 1.3860 40 1 1.7020 -5.5680 1.4889 41 1 -1.3992 -4.4213 2.4946 42 1 -1.8285 -5.6537 3.7216 43 1 -0.2408 -3.0573 4.1115 44 1 -1.6290 -3.6667 5.0689 45 1 -0.2809 -5.4355 6.0926 46 1 0.8867 -4.0798 6.0067 47 1 2.0923 -7.4527 4.2117 48 1 0.6275 -7.4902 5.2223 49 1 2.5367 -5.8352 6.4839 50 1 4.4285 -6.3055 9.1908 51 1 2.6002 -4.0220 4.8209 52 1 3.1655 -5.3405 3.7510 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112315689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:31 Heat of formation + Delta-G solvation = -73.489423 kcal Electronic energy + Delta-G solvation = -29298.084245 eV Core-core repulsion = 25490.617438 eV Total energy + Delta-G solvation = -3807.466807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.69921 -39.45041 -38.00508 -34.75671 -34.02731 -33.66671 -31.72583 -29.89067 -29.72402 -28.35530 -27.77150 -27.26214 -25.38715 -25.01876 -23.60241 -22.09544 -20.35878 -20.17618 -19.39529 -18.63244 -17.40169 -16.98030 -16.55812 -16.17036 -15.71828 -15.67134 -14.71385 -14.46367 -14.44203 -14.20774 -13.72525 -13.60829 -13.52246 -13.40392 -13.14033 -12.95253 -12.84042 -12.60617 -12.47741 -12.29396 -12.18454 -12.06248 -12.02225 -11.57398 -11.49742 -11.17775 -10.91553 -10.84503 -10.76800 -10.72136 -10.58230 -10.53370 -10.35370 -10.21275 -9.93235 -9.84361 -9.65117 -9.57701 -8.85613 -8.50067 -6.89628 -5.73062 -3.02201 2.65853 2.70538 3.45618 3.50368 3.52488 3.69305 4.33310 4.43263 4.49142 4.55079 4.62001 4.66934 4.68491 4.81974 4.87215 4.99354 5.14270 5.21247 5.21882 5.30766 5.33338 5.36485 5.38522 5.42229 5.51258 5.52327 5.58313 5.60459 5.65882 5.68145 5.75840 5.79113 5.91203 5.91740 5.94732 5.96478 6.04281 6.17571 6.22570 6.27689 6.37145 6.53524 6.54313 6.65330 6.76979 6.80790 6.95021 7.66126 7.72121 8.28570 8.45123 9.56558 10.14058 10.48629 11.49484 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020620 B = 0.002810 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.546559 B = 9961.515848 C =10576.662266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.350 6.350 6 C 0.046 3.954 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.618 5.618 10 C 0.104 3.896 11 C -0.098 4.098 12 H 0.096 0.904 13 C -0.113 4.113 14 C -0.124 4.124 15 C -0.103 4.103 16 C -0.075 4.075 17 C 0.173 3.827 18 N -0.730 5.730 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.123 3.877 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.020 0.980 48 H 0.024 0.976 49 H 0.385 0.615 50 H 0.255 0.745 51 H 0.086 0.914 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.480 10.092 -21.760 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.269 6.269 6 C -0.034 4.034 7 C 0.319 3.681 8 O -0.393 6.393 9 N -0.355 5.355 10 C -0.019 4.019 11 C -0.118 4.118 12 H 0.114 0.886 13 C -0.150 4.150 14 C -0.161 4.161 15 C -0.141 4.141 16 C -0.076 4.076 17 C 0.045 3.955 18 N -0.375 5.375 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.001 3.999 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.038 0.962 48 H 0.041 0.959 49 H 0.219 0.781 50 H 0.065 0.935 51 H 0.104 0.896 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.906 10.530 -21.199 26.062 hybrid contribution 0.301 -0.802 0.389 0.941 sum -10.605 9.728 -20.810 25.301 Atomic orbital electron populations 1.22453 0.95643 1.02531 1.03092 1.21593 0.93215 0.93508 0.85237 1.21739 1.02239 0.92931 1.02498 1.22457 1.02527 1.00890 0.97866 1.88118 1.74001 1.21905 1.42856 1.22170 0.99525 0.85166 0.96518 1.19732 0.81165 0.80151 0.87043 1.90759 1.37776 1.59821 1.50985 1.48890 1.51706 1.09559 1.25300 1.22542 0.93835 0.91272 0.94251 1.22703 0.94893 0.99490 0.94678 0.88622 1.22354 0.96317 0.97901 0.98469 1.22856 0.98895 0.97804 0.96575 1.22740 0.97026 0.97849 0.96439 1.22265 0.94474 0.96684 0.94216 1.20602 0.93996 0.91243 0.89653 1.42343 1.60165 1.06803 1.28170 1.19193 1.24845 0.87354 1.05802 0.91244 1.24739 1.00959 0.96365 0.98810 1.69661 1.42797 1.19385 1.26051 0.86212 0.78935 0.82009 0.79139 1.21776 1.21820 1.20826 1.22466 0.96309 0.93501 0.87581 0.91457 0.91331 0.92237 0.91594 0.91076 0.91590 0.92221 0.91335 0.91464 0.90451 0.90438 0.90775 0.90912 0.92149 0.91378 0.92113 0.92115 0.90767 0.91310 0.96234 0.95856 0.78091 0.93481 0.89570 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.25 37.15 0.31 -0.99 16 2 C 0.10 0.93 1.14 -90.62 -0.10 0.83 16 3 C -0.14 -1.10 8.84 37.16 0.33 -0.77 16 4 C -0.18 -1.30 8.25 37.16 0.31 -0.99 16 5 O -0.35 -4.58 9.52 -55.14 -0.52 -5.10 16 6 C 0.05 0.52 4.59 36.00 0.17 0.69 16 7 C 0.53 8.32 7.95 -10.99 -0.09 8.23 16 8 O -0.52 -10.73 16.76 -14.35 -0.24 -10.97 16 9 N -0.62 -8.74 2.53 -169.46 -0.43 -9.17 16 10 C 0.10 1.08 6.34 -2.46 -0.02 1.06 16 11 C -0.10 -1.12 3.62 -88.30 -0.32 -1.44 16 12 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 13 C -0.11 -1.18 6.28 -25.16 -0.16 -1.34 16 14 C -0.12 -1.58 6.57 -23.51 -0.15 -1.74 16 15 C -0.10 -1.65 5.50 -23.87 -0.13 -1.78 16 16 C -0.08 -1.17 0.67 -152.21 -0.10 -1.27 16 17 C 0.17 3.31 5.10 -4.04 -0.02 3.29 16 18 N -0.73 -18.07 5.23 -59.90 -0.31 -18.38 16 19 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.12 2.09 5.51 -2.48 -0.01 2.07 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.39 6.54 -51.93 -0.34 0.05 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.71 6.42 -51.93 -0.33 0.38 16 38 H 0.08 0.72 6.23 -51.93 -0.32 0.39 16 39 H 0.07 0.57 6.60 -51.93 -0.34 0.23 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.52 7.45 -51.93 -0.39 0.13 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 44 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 45 H 0.07 1.25 7.96 -51.93 -0.41 0.84 16 46 H 0.07 1.25 7.42 -51.93 -0.39 0.86 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.39 10.16 7.06 -40.82 -0.29 9.88 16 50 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 51 H 0.09 1.72 7.15 -51.93 -0.37 1.35 16 52 H 0.08 1.37 7.95 -51.93 -0.41 0.96 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -33.93 398.77 -9.40 -43.33 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -9.36 Total: 5.90 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.24 Total: -1.42 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.02 Total: -55.24 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -0.77 Total: -16.08 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.93 -9.40 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112315689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.161 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds