Wall clock time and date at job start Tue Mar 31 2020 13:44:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52992 * 109.46926 * 2 1
4 4 C 1.53008 * 109.47104 * 175.06269 * 3 2 1
5 5 H 1.09002 * 109.46858 * 305.24761 * 4 3 2
6 6 O 1.42897 * 109.47079 * 65.24912 * 4 3 2
7 7 C 1.42894 * 114.00027 * 209.39930 * 6 4 3
8 8 C 1.50697 * 109.47122 * 185.24856 * 4 3 2
9 9 O 1.21275 * 120.00260 * 244.99702 * 8 4 3
10 10 N 1.34779 * 119.99974 * 65.00109 * 8 4 3
11 11 C 1.48402 * 127.98428 * 0.09086 * 10 8 4
12 12 C 1.54320 * 104.73321 * 140.20738 * 11 10 8
13 13 H 1.09005 * 111.85225 * 262.46425 * 12 11 10
14 14 C 1.54155 * 108.86563 * 137.45606 * 12 11 10
15 15 C 1.54845 * 104.32590 * 271.24861 * 14 12 11
16 16 C 1.54842 * 102.73377 * 321.80786 * 15 14 12
17 17 C 1.54157 * 104.32815 * 38.18562 * 16 15 14
18 18 C 1.53002 * 112.54677 * 213.36315 * 17 16 15
19 19 N 1.46507 * 109.47102 * 298.07676 * 18 17 16
20 20 C 1.36936 * 119.99997 * 180.02562 * 19 18 17
21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 18
22 22 C 1.38808 * 120.00025 * 180.02562 * 20 19 18
23 23 N 1.31623 * 120.00175 * 0.02562 * 22 20 19
24 24 Si 1.86801 * 120.00114 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46943 * 60.00327 * 24 22 20
26 26 H 1.48501 * 109.47185 * 180.02562 * 24 22 20
27 27 H 1.48505 * 109.47155 * 300.00253 * 24 22 20
28 28 C 1.48115 * 127.84467 * 179.97438 * 10 8 4
29 29 H 1.08999 * 109.47097 * 299.99869 * 1 2 3
30 30 H 1.08994 * 109.47190 * 60.00401 * 1 2 3
31 31 H 1.09002 * 109.47180 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47420 * 239.99762 * 2 1 3
33 33 H 1.09006 * 109.47022 * 119.99985 * 2 1 3
34 34 H 1.09001 * 109.47401 * 55.06719 * 3 2 1
35 35 H 1.08999 * 109.47642 * 295.06117 * 3 2 1
36 36 H 1.09000 * 109.47041 * 304.84935 * 7 6 4
37 37 H 1.09002 * 109.47033 * 64.84656 * 7 6 4
38 38 H 1.09005 * 109.46905 * 184.84737 * 7 6 4
39 39 H 1.08997 * 110.37559 * 21.38652 * 11 10 8
40 40 H 1.09002 * 110.37336 * 259.02188 * 11 10 8
41 41 H 1.09002 * 110.46472 * 29.96285 * 14 12 11
42 42 H 1.09009 * 110.46340 * 152.53828 * 14 12 11
43 43 H 1.08997 * 110.75374 * 80.11696 * 15 14 12
44 44 H 1.08999 * 110.76124 * 203.30601 * 15 14 12
45 45 H 1.09000 * 110.45776 * 279.46963 * 16 15 14
46 46 H 1.09005 * 110.45972 * 156.89871 * 16 15 14
47 47 H 1.09000 * 109.47201 * 58.07917 * 18 17 16
48 48 H 1.09000 * 109.46941 * 178.08313 * 18 17 16
49 49 H 0.96998 * 119.99717 * 0.02562 * 19 18 17
50 50 H 0.97000 * 120.00355 * 179.97438 * 23 22 20
51 51 H 1.08996 * 110.39715 * 100.93848 * 28 10 8
52 52 H 1.09002 * 110.39370 * 338.66036 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4424 0.0000
4 6 3.5650 1.4443 0.1242
5 1 3.8583 0.8759 1.0068
6 8 4.1384 0.8459 -1.0400
7 6 5.3901 0.1983 -0.8040
8 6 4.0567 2.8629 0.2538
9 8 4.7496 3.3464 -0.6161
10 7 3.7264 3.5942 1.3366
11 6 2.8980 3.1843 2.4977
12 6 3.6057 3.8016 3.7222
13 1 4.2510 3.0805 4.2241
14 6 2.5416 4.3986 4.6644
15 6 2.3533 5.8501 4.1588
16 6 3.7946 6.2685 3.7778
17 6 4.4082 4.9990 3.1546
18 6 5.9057 4.8700 3.4406
19 7 6.6158 6.0061 2.8477
20 6 7.9756 6.1055 2.9750
21 1 8.5246 5.3468 3.5128
22 6 8.6483 7.1822 2.4136
23 7 7.9792 8.1077 1.7594
24 14 10.5032 7.3183 2.5879
25 1 11.1468 6.1313 1.9697
26 1 10.9755 8.5497 1.9054
27 1 10.8618 7.3823 4.0276
28 6 4.1104 4.9921 1.6406
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6062 1.9812 0.8425
35 1 1.7507 1.9302 -0.9309
36 1 6.0841 0.9043 -0.3479
37 1 5.2405 -0.6484 -0.1340
38 1 5.8004 -0.1549 -1.7501
39 1 2.8728 2.0978 2.5812
40 1 1.8877 3.5823 2.4023
41 1 1.6072 3.8431 4.5847
42 1 2.9002 4.3972 5.6938
43 1 1.7008 5.8734 3.2860
44 1 1.9596 6.4871 4.9508
45 1 4.3526 6.5650 4.6659
46 1 3.7761 7.0796 3.0499
47 1 6.0704 4.8609 4.5181
48 1 6.2796 3.9420 3.0080
49 1 6.1227 6.6877 2.3649
50 1 8.4492 8.8603 1.3675
51 1 3.2880 5.6701 1.4125
52 1 5.0003 5.2727 1.0773
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001112508148.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:44:26
Heat of formation + Delta-G solvation = -80.763406 kcal
Electronic energy + Delta-G solvation = -29681.569040 eV
Core-core repulsion = 25873.786810 eV
Total energy + Delta-G solvation = -3807.782231 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.70646 -39.23648 -37.18577 -35.22779 -34.54573 -34.24730 -31.68538 -30.39967
-29.82072 -28.76348 -26.51478 -25.98629 -25.52011 -24.33957 -23.36331 -22.03239
-21.41028 -20.12598 -19.40308 -18.51711 -17.50306 -17.07282 -16.58873 -15.88713
-15.77589 -15.21538 -15.03593 -14.86395 -14.48662 -14.28598 -14.06180 -13.63053
-13.46182 -13.33872 -13.16574 -12.98607 -12.77308 -12.70308 -12.36398 -12.26705
-11.90698 -11.64275 -11.54860 -11.36369 -11.20251 -11.13599 -10.90348 -10.85236
-10.80535 -10.77991 -10.61723 -10.48649 -10.44337 -10.32557 -10.27621 -9.94382
-9.60151 -9.13234 -8.82558 -8.51254 -6.87026 -5.71425 -2.99758 2.74892
2.96663 3.47477 3.51738 3.52833 3.67445 4.30515 4.44548 4.57908
4.63461 4.65416 4.74618 4.78385 4.86901 4.96975 5.14016 5.22943
5.25291 5.29806 5.31392 5.34367 5.40137 5.44239 5.52304 5.55587
5.56719 5.61746 5.63154 5.65681 5.68900 5.77475 5.83761 5.92103
5.95182 5.99548 6.06307 6.07138 6.18061 6.21044 6.29325 6.30432
6.51277 6.54793 6.62391 6.78555 6.84852 6.93680 7.73102 7.73500
8.35379 8.47253 9.58497 10.15725 10.50593 11.51397
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.012410 B = 0.003852 C = 0.003145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2255.638936 B = 7266.485686 C = 8901.789809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.120 4.120
3 C -0.114 4.114
4 C 0.080 3.920
5 H 0.083 0.917
6 O -0.357 6.357
7 C 0.029 3.971
8 C 0.506 3.494
9 O -0.518 6.518
10 N -0.619 5.619
11 C 0.105 3.895
12 C -0.100 4.100
13 H 0.088 0.912
14 C -0.113 4.113
15 C -0.126 4.126
16 C -0.105 4.105
17 C -0.073 4.073
18 C 0.174 3.826
19 N -0.728 5.728
20 C -0.239 4.239
21 H 0.068 0.932
22 C -0.012 4.012
23 N -0.932 5.932
24 Si 0.906 3.094
25 H -0.287 1.287
26 H -0.291 1.291
27 H -0.287 1.287
28 C 0.113 3.887
29 H 0.054 0.946
30 H 0.055 0.945
31 H 0.054 0.946
32 H 0.071 0.929
33 H 0.060 0.940
34 H 0.082 0.918
35 H 0.077 0.923
36 H 0.048 0.952
37 H 0.040 0.960
38 H 0.089 0.911
39 H 0.073 0.927
40 H 0.074 0.926
41 H 0.064 0.936
42 H 0.069 0.931
43 H 0.063 0.937
44 H 0.065 0.935
45 H 0.074 0.926
46 H 0.070 0.930
47 H 0.021 0.979
48 H 0.016 0.984
49 H 0.384 0.616
50 H 0.255 0.745
51 H 0.066 0.934
52 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.084 -15.852 2.877 24.220
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.158 4.158
3 C -0.152 4.152
4 C 0.018 3.982
5 H 0.100 0.900
6 O -0.274 6.274
7 C -0.067 4.067
8 C 0.293 3.707
9 O -0.392 6.392
10 N -0.355 5.355
11 C -0.018 4.018
12 C -0.119 4.119
13 H 0.106 0.894
14 C -0.151 4.151
15 C -0.163 4.163
16 C -0.143 4.143
17 C -0.074 4.074
18 C 0.047 3.953
19 N -0.373 5.373
20 C -0.370 4.370
21 H 0.086 0.914
22 C -0.208 4.208
23 N -0.581 5.581
24 Si 0.737 3.263
25 H -0.213 1.213
26 H -0.217 1.217
27 H -0.213 1.213
28 C -0.009 4.009
29 H 0.073 0.927
30 H 0.074 0.926
31 H 0.073 0.927
32 H 0.089 0.911
33 H 0.079 0.921
34 H 0.101 0.899
35 H 0.096 0.904
36 H 0.067 0.933
37 H 0.059 0.941
38 H 0.107 0.893
39 H 0.091 0.909
40 H 0.092 0.908
41 H 0.083 0.917
42 H 0.087 0.913
43 H 0.081 0.919
44 H 0.084 0.916
45 H 0.093 0.907
46 H 0.089 0.911
47 H 0.039 0.961
48 H 0.033 0.967
49 H 0.218 0.782
50 H 0.065 0.935
51 H 0.084 0.916
52 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -17.577 -15.695 2.105 23.658
hybrid contribution 1.188 0.353 0.209 1.257
sum -16.389 -15.342 2.314 22.569
Atomic orbital electron populations
1.21769 0.95593 1.01662 1.01919 1.21479 0.95857 0.95852 1.02590
1.21737 0.90955 0.98559 1.03942 1.22026 0.95065 0.90761 0.90299
0.89956 1.87960 1.36189 1.71810 1.31457 1.22858 0.85647 0.95831
1.02406 1.20961 0.80755 0.88137 0.80802 1.90764 1.37159 1.72017
1.39302 1.49099 1.51546 1.15005 1.19822 1.22648 0.94511 0.99559
0.85130 1.22729 0.96618 0.97493 0.95090 0.89393 1.22335 0.97652
0.96156 0.98956 1.22518 0.97474 0.95898 1.00431 1.22301 0.94309
0.96471 1.01232 1.22251 0.96682 0.94474 0.94031 1.20533 0.87279
0.91685 0.95837 1.42312 1.04669 1.24904 1.65372 1.19139 0.83586
1.05575 1.28748 0.91432 1.24714 0.97831 0.97488 1.00782 1.69641
1.34534 1.13107 1.40787 0.86282 0.85675 0.76918 0.77387 1.21333
1.21689 1.21350 1.22561 1.01476 0.81458 0.95381 0.92707 0.92625
0.92677 0.91073 0.92097 0.89916 0.90393 0.93345 0.94103 0.89269
0.90865 0.90831 0.91691 0.91265 0.91865 0.91616 0.90727 0.91125
0.96120 0.96666 0.78157 0.93484 0.91575 0.88450
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16
2 C -0.12 -0.94 5.78 -26.73 -0.15 -1.10 16
3 C -0.11 -1.11 4.75 -26.73 -0.13 -1.24 16
4 C 0.08 1.00 1.81 -27.88 -0.05 0.95 16
5 H 0.08 0.86 7.43 -51.93 -0.39 0.47 16
6 O -0.36 -5.01 9.52 -55.09 -0.52 -5.54 16
7 C 0.03 0.34 10.79 101.05 1.09 1.43 16
8 C 0.51 8.46 7.21 -10.99 -0.08 8.39 16
9 O -0.52 -11.40 16.77 -14.30 -0.24 -11.64 16
10 N -0.62 -9.21 3.32 -169.22 -0.56 -9.77 16
11 C 0.10 1.10 4.72 -2.30 -0.01 1.09 16
12 C -0.10 -1.15 3.59 -88.31 -0.32 -1.47 16
13 H 0.09 1.02 7.88 -51.93 -0.41 0.61 16
14 C -0.11 -1.07 6.10 -25.15 -0.15 -1.23 16
15 C -0.13 -1.34 6.82 -24.79 -0.17 -1.51 16
16 C -0.11 -1.53 5.22 -25.16 -0.13 -1.66 16
17 C -0.07 -1.14 0.63 -152.21 -0.10 -1.24 16
18 C 0.17 3.54 5.20 -4.04 -0.02 3.52 16
19 N -0.73 -18.59 4.93 -59.90 -0.30 -18.88 16
20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16
21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16
23 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16
24 Si 0.91 23.04 29.55 -169.99 -5.02 18.01 16
25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
28 C 0.11 1.93 5.75 -2.47 -0.01 1.92 16
29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16
33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16
35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
36 H 0.05 0.66 8.11 -51.93 -0.42 0.24 16
37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16
38 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
39 H 0.07 0.61 6.80 -51.93 -0.35 0.26 16
40 H 0.07 0.66 7.51 -51.93 -0.39 0.27 16
41 H 0.06 0.49 7.74 -51.93 -0.40 0.08 16
42 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16
43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
45 H 0.07 1.18 7.99 -51.93 -0.41 0.77 16
46 H 0.07 1.11 7.74 -51.93 -0.40 0.71 16
47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16
48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16
49 H 0.38 10.27 6.85 -40.82 -0.28 9.99 16
50 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
51 H 0.07 1.04 7.61 -51.93 -0.40 0.64 16
52 H 0.10 2.14 6.87 -51.93 -0.36 1.79 16
LS Contribution 402.55 15.07 6.07 6.07
Total: -1.00 -34.66 402.55 -9.52 -44.18
By element:
Atomic # 1 Polarization: 15.40 SS G_CDS: -9.55 Total: 5.85 kcal
Atomic # 6 Polarization: -0.13 SS G_CDS: -0.11 Total: -0.24 kcal
Atomic # 7 Polarization: -56.56 SS G_CDS: -0.13 Total: -56.70 kcal
Atomic # 8 Polarization: -16.41 SS G_CDS: -0.76 Total: -17.17 kcal
Atomic # 14 Polarization: 23.04 SS G_CDS: -5.02 Total: 18.01 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -34.66 -9.52 -44.18 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112508148.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.586 kcal
(2) G-P(sol) polarization free energy of solvation -34.659 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.178 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds