Wall clock time and date at job start Tue Mar 31 2020 13:44:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52992 * 109.46926 * 2 1
4 4 C 1.53008 * 109.47104 * 175.06269 * 3 2 1
5 5 H 1.09002 * 109.46858 * 305.24761 * 4 3 2
6 6 O 1.42897 * 109.47079 * 65.24912 * 4 3 2
7 7 C 1.42894 * 114.00027 * 209.39930 * 6 4 3
8 8 C 1.50697 * 109.47122 * 185.24856 * 4 3 2
9 9 O 1.21275 * 120.00260 * 244.99702 * 8 4 3
10 10 N 1.34779 * 119.99974 * 65.00109 * 8 4 3
11 11 C 1.48402 * 127.98428 * 0.09086 * 10 8 4
12 12 C 1.54320 * 104.73321 * 140.20738 * 11 10 8
13 13 H 1.09005 * 111.85225 * 262.46425 * 12 11 10
14 14 C 1.54155 * 108.86563 * 137.45606 * 12 11 10
15 15 C 1.54845 * 104.32590 * 271.24861 * 14 12 11
16 16 C 1.54842 * 102.73377 * 321.80786 * 15 14 12
17 17 C 1.54157 * 104.32815 * 38.18562 * 16 15 14
18 18 C 1.53002 * 112.54677 * 213.36315 * 17 16 15
19 19 N 1.46507 * 109.47102 * 298.07676 * 18 17 16
20 20 C 1.36936 * 119.99997 * 180.02562 * 19 18 17
21 21 H 1.08000 * 120.00043 * 359.97438 * 20 19 18
22 22 C 1.38808 * 120.00025 * 180.02562 * 20 19 18
23 23 N 1.31623 * 120.00175 * 0.02562 * 22 20 19
24 24 Si 1.86801 * 120.00114 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46943 * 60.00327 * 24 22 20
26 26 H 1.48501 * 109.47185 * 180.02562 * 24 22 20
27 27 H 1.48505 * 109.47155 * 300.00253 * 24 22 20
28 28 C 1.48115 * 127.84467 * 179.97438 * 10 8 4
29 29 H 1.08999 * 109.47097 * 299.99869 * 1 2 3
30 30 H 1.08994 * 109.47190 * 60.00401 * 1 2 3
31 31 H 1.09002 * 109.47180 * 179.97438 * 1 2 3
32 32 H 1.09003 * 109.47420 * 239.99762 * 2 1 3
33 33 H 1.09006 * 109.47022 * 119.99985 * 2 1 3
34 34 H 1.09001 * 109.47401 * 55.06719 * 3 2 1
35 35 H 1.08999 * 109.47642 * 295.06117 * 3 2 1
36 36 H 1.09000 * 109.47041 * 304.84935 * 7 6 4
37 37 H 1.09002 * 109.47033 * 64.84656 * 7 6 4
38 38 H 1.09005 * 109.46905 * 184.84737 * 7 6 4
39 39 H 1.08997 * 110.37559 * 21.38652 * 11 10 8
40 40 H 1.09002 * 110.37336 * 259.02188 * 11 10 8
41 41 H 1.09002 * 110.46472 * 29.96285 * 14 12 11
42 42 H 1.09009 * 110.46340 * 152.53828 * 14 12 11
43 43 H 1.08997 * 110.75374 * 80.11696 * 15 14 12
44 44 H 1.08999 * 110.76124 * 203.30601 * 15 14 12
45 45 H 1.09000 * 110.45776 * 279.46963 * 16 15 14
46 46 H 1.09005 * 110.45972 * 156.89871 * 16 15 14
47 47 H 1.09000 * 109.47201 * 58.07917 * 18 17 16
48 48 H 1.09000 * 109.46941 * 178.08313 * 18 17 16
49 49 H 0.96998 * 119.99717 * 0.02562 * 19 18 17
50 50 H 0.97000 * 120.00355 * 179.97438 * 23 22 20
51 51 H 1.08996 * 110.39715 * 100.93848 * 28 10 8
52 52 H 1.09002 * 110.39370 * 338.66036 * 28 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4424 0.0000
4 6 3.5650 1.4443 0.1242
5 1 3.8583 0.8759 1.0068
6 8 4.1384 0.8459 -1.0400
7 6 5.3901 0.1983 -0.8040
8 6 4.0567 2.8629 0.2538
9 8 4.7496 3.3464 -0.6161
10 7 3.7264 3.5942 1.3366
11 6 2.8980 3.1843 2.4977
12 6 3.6057 3.8016 3.7222
13 1 4.2510 3.0805 4.2241
14 6 2.5416 4.3986 4.6644
15 6 2.3533 5.8501 4.1588
16 6 3.7946 6.2685 3.7778
17 6 4.4082 4.9990 3.1546
18 6 5.9057 4.8700 3.4406
19 7 6.6158 6.0061 2.8477
20 6 7.9756 6.1055 2.9750
21 1 8.5246 5.3468 3.5128
22 6 8.6483 7.1822 2.4136
23 7 7.9792 8.1077 1.7594
24 14 10.5032 7.3183 2.5879
25 1 11.1468 6.1313 1.9697
26 1 10.9755 8.5497 1.9054
27 1 10.8618 7.3823 4.0276
28 6 4.1104 4.9921 1.6406
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6062 1.9812 0.8425
35 1 1.7507 1.9302 -0.9309
36 1 6.0841 0.9043 -0.3479
37 1 5.2405 -0.6484 -0.1340
38 1 5.8004 -0.1549 -1.7501
39 1 2.8728 2.0978 2.5812
40 1 1.8877 3.5823 2.4023
41 1 1.6072 3.8431 4.5847
42 1 2.9002 4.3972 5.6938
43 1 1.7008 5.8734 3.2860
44 1 1.9596 6.4871 4.9508
45 1 4.3526 6.5650 4.6659
46 1 3.7761 7.0796 3.0499
47 1 6.0704 4.8609 4.5181
48 1 6.2796 3.9420 3.0080
49 1 6.1227 6.6877 2.3649
50 1 8.4492 8.8603 1.3675
51 1 3.2880 5.6701 1.4125
52 1 5.0003 5.2727 1.0773
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112508148.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:44:26
Heat of formation + Delta-G solvation = -103.239609 kcal
Electronic energy + Delta-G solvation = -29682.543682 eV
Core-core repulsion = 25873.786810 eV
Total energy + Delta-G solvation = -3808.756872 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.87926 -40.37724 -38.35948 -36.55823 -35.97071 -35.29701 -33.52071 -31.48813
-31.01668 -30.04985 -27.66726 -27.20180 -26.53986 -25.81233 -24.69289 -23.50090
-22.07734 -21.10299 -20.56418 -19.88403 -19.16845 -18.43023 -17.69469 -17.08140
-16.88115 -16.71710 -16.21296 -15.97493 -15.63745 -15.46706 -15.31905 -15.08431
-14.92095 -14.66062 -14.39154 -14.16538 -13.80221 -13.72856 -13.39959 -13.13263
-13.11609 -13.02727 -12.93938 -12.74602 -12.38143 -12.25869 -12.16559 -12.05783
-11.98399 -11.78616 -11.74434 -11.65224 -11.58748 -11.51834 -11.46990 -11.42500
-11.30156 -10.96489 -10.32244 -9.76679 -9.03406 -7.99062 -5.27630 1.40599
1.45014 1.49982 1.50902 1.81513 2.51418 2.72832 3.25826 3.33514
3.44635 3.62782 3.67988 3.82390 3.85001 4.14353 4.19250 4.21131
4.23932 4.26180 4.28261 4.40220 4.44047 4.45875 4.48950 4.52644
4.67711 4.70818 4.74761 4.77498 4.78198 4.78780 4.89142 4.92670
4.97313 5.04761 5.06511 5.11801 5.22550 5.28858 5.30438 5.32810
5.37590 5.38553 5.41439 5.52126 5.53066 5.55793 5.96603 6.22795
6.55428 7.09714 7.28947 8.05618 8.28762 9.24392
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.012410 B = 0.003852 C = 0.003145
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2255.638936 B = 7266.485686 C = 8901.789809
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.115 4.115
3 C -0.108 4.108
4 C 0.086 3.914
5 H 0.112 0.888
6 O -0.378 6.378
7 C 0.026 3.974
8 C 0.494 3.506
9 O -0.590 6.590
10 N -0.616 5.616
11 C 0.101 3.899
12 C -0.093 4.093
13 H 0.093 0.907
14 C -0.102 4.102
15 C -0.116 4.116
16 C -0.107 4.107
17 C -0.070 4.070
18 C 0.175 3.825
19 N -0.740 5.740
20 C -0.248 4.248
21 H 0.072 0.928
22 C -0.076 4.076
23 N -0.969 5.969
24 Si 0.974 3.026
25 H -0.283 1.283
26 H -0.293 1.293
27 H -0.272 1.272
28 C 0.116 3.884
29 H 0.067 0.933
30 H 0.047 0.953
31 H 0.063 0.937
32 H 0.057 0.943
33 H 0.079 0.921
34 H 0.104 0.896
35 H 0.057 0.943
36 H 0.018 0.982
37 H 0.075 0.925
38 H 0.098 0.902
39 H 0.109 0.891
40 H 0.105 0.895
41 H 0.103 0.897
42 H 0.075 0.925
43 H 0.074 0.926
44 H 0.080 0.920
45 H 0.056 0.944
46 H 0.046 0.954
47 H 0.027 0.973
48 H -0.002 1.002
49 H 0.374 0.626
50 H 0.251 0.749
51 H 0.078 0.922
52 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.717 -18.517 5.351 28.296
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.152 4.152
3 C -0.145 4.145
4 C 0.025 3.975
5 H 0.130 0.870
6 O -0.296 6.296
7 C -0.070 4.070
8 C 0.284 3.716
9 O -0.470 6.470
10 N -0.350 5.350
11 C -0.019 4.019
12 C -0.112 4.112
13 H 0.111 0.889
14 C -0.139 4.139
15 C -0.153 4.153
16 C -0.145 4.145
17 C -0.071 4.071
18 C 0.048 3.952
19 N -0.382 5.382
20 C -0.380 4.380
21 H 0.090 0.910
22 C -0.268 4.268
23 N -0.619 5.619
24 Si 0.803 3.197
25 H -0.209 1.209
26 H -0.219 1.219
27 H -0.198 1.198
28 C -0.007 4.007
29 H 0.086 0.914
30 H 0.066 0.934
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.098 0.902
34 H 0.123 0.877
35 H 0.076 0.924
36 H 0.037 0.963
37 H 0.093 0.907
38 H 0.117 0.883
39 H 0.127 0.873
40 H 0.122 0.878
41 H 0.122 0.878
42 H 0.093 0.907
43 H 0.093 0.907
44 H 0.099 0.901
45 H 0.075 0.925
46 H 0.064 0.936
47 H 0.045 0.955
48 H 0.016 0.984
49 H 0.206 0.794
50 H 0.060 0.940
51 H 0.096 0.904
52 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -20.251 -18.411 4.649 27.762
hybrid contribution 2.036 1.182 -0.560 2.420
sum -18.215 -17.229 4.089 25.404
Atomic orbital electron populations
1.21762 0.94500 1.02354 1.02198 1.21446 0.96697 0.94183 1.02895
1.21784 0.88661 1.00219 1.03878 1.22242 0.96587 0.87686 0.90969
0.87010 1.87941 1.36782 1.71939 1.32909 1.22979 0.84483 0.95920
1.03602 1.22011 0.79659 0.89813 0.80129 1.90723 1.40472 1.73758
1.42009 1.49224 1.51339 1.13867 1.20601 1.23061 0.94730 1.01958
0.82188 1.22760 0.96812 0.95575 0.96090 0.88881 1.22336 0.98330
0.94962 0.98315 1.22495 0.94228 0.97174 1.01443 1.22263 0.97347
0.95238 0.99622 1.22146 0.93997 0.97594 0.93368 1.20662 0.90326
0.88960 0.95234 1.42511 1.04138 1.26063 1.65503 1.19571 0.85204
1.05350 1.27901 0.91038 1.25586 1.02570 0.97486 1.01142 1.69816
1.36175 1.13717 1.42217 0.85207 0.80046 0.76586 0.77900 1.20912
1.21931 1.19782 1.22344 0.99266 0.83456 0.95625 0.91400 0.93421
0.91813 0.92387 0.90227 0.87738 0.92386 0.96301 0.90675 0.88342
0.87307 0.87751 0.87829 0.90677 0.90716 0.90132 0.92511 0.93553
0.95542 0.98431 0.79387 0.94004 0.90414 0.94686
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 9.91 71.98 0.71 -0.75 16
2 C -0.11 -1.40 5.78 30.59 0.18 -1.23 16
3 C -0.11 -1.81 4.75 30.59 0.15 -1.66 16
4 C 0.09 2.03 1.81 29.85 0.05 2.08 16
5 H 0.11 1.95 7.43 -2.39 -0.02 1.93 16
6 O -0.38 -10.53 9.52 -129.99 -1.24 -11.76 16
7 C 0.03 0.61 10.79 113.37 1.22 1.83 16
8 C 0.49 16.86 7.21 87.66 0.63 17.49 16
9 O -0.59 -27.92 16.77 15.98 0.27 -27.65 16
10 N -0.62 -18.01 3.32 -807.69 -2.68 -20.69 16
11 C 0.10 1.71 4.72 86.46 0.41 2.12 16
12 C -0.09 -1.84 3.59 -9.30 -0.03 -1.88 16
13 H 0.09 1.82 7.88 -2.38 -0.02 1.80 16
14 C -0.10 -1.41 6.10 31.62 0.19 -1.22 16
15 C -0.12 -2.09 6.82 31.85 0.22 -1.88 16
16 C -0.11 -3.10 5.22 31.61 0.17 -2.93 16
17 C -0.07 -2.18 0.63 -50.69 -0.03 -2.21 16
18 C 0.17 7.35 5.20 86.38 0.45 7.80 16
19 N -0.74 -39.91 4.93 -343.44 -1.69 -41.60 16
20 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16
21 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16
22 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16
23 N -0.97 -62.48 13.06 21.65 0.28 -62.20 16
24 Si 0.97 48.62 29.55 68.60 2.03 50.65 16
25 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16
26 H -0.29 -14.63 7.11 99.48 0.71 -13.93 16
27 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16
28 C 0.12 4.14 5.75 86.51 0.50 4.64 16
29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16
30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16
31 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16
32 H 0.06 0.88 7.96 -2.39 -0.02 0.86 16
33 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16
34 H 0.10 1.27 5.96 -2.39 -0.01 1.25 16
35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.02 0.53 8.11 -2.39 -0.02 0.51 16
37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16
38 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16
39 H 0.11 1.15 6.80 -2.39 -0.02 1.13 16
40 H 0.10 1.23 7.51 -2.39 -0.02 1.21 16
41 H 0.10 0.77 7.74 -2.39 -0.02 0.75 16
42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16
43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16
45 H 0.06 1.83 7.99 -2.39 -0.02 1.81 16
46 H 0.05 1.54 7.74 -2.38 -0.02 1.52 16
47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16
48 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16
49 H 0.37 21.48 6.85 -92.71 -0.64 20.85 16
50 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16
51 H 0.08 2.53 7.61 -2.39 -0.02 2.51 16
52 H 0.03 1.68 6.87 -2.39 -0.02 1.67 16
Total: -1.00 -83.79 402.55 3.32 -80.47
By element:
Atomic # 1 Polarization: 28.38 SS G_CDS: 0.24 Total: 28.63 kcal
Atomic # 6 Polarization: -1.96 SS G_CDS: 6.12 Total: 4.15 kcal
Atomic # 7 Polarization: -120.40 SS G_CDS: -4.09 Total: -124.49 kcal
Atomic # 8 Polarization: -38.44 SS G_CDS: -0.97 Total: -39.41 kcal
Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal
Total: -83.79 3.32 -80.47 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112508148.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.770 kcal
(2) G-P(sol) polarization free energy of solvation -83.795 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds