Wall clock time and date at job start Tue Mar 31 2020 13:56:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47089 * 2 1
4 4 C 1.53000 * 109.46912 * 240.00126 * 2 1 3
5 5 N 1.46496 * 109.47295 * 120.00215 * 2 1 3
6 6 C 1.34781 * 119.99880 * 283.64754 * 5 2 1
7 7 O 1.21284 * 120.00001 * 181.89963 * 6 5 2
8 8 C 1.50699 * 120.00338 * 1.89290 * 6 5 2
9 9 C 1.50697 * 109.47151 * 158.70503 * 8 6 5
10 10 H 1.07998 * 120.00068 * 0.02562 * 9 8 6
11 11 C 1.37875 * 119.99851 * 180.02562 * 9 8 6
12 12 N 1.31517 * 120.00112 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 120.00132 * 180.02562 * 11 9 8
14 14 H 1.48500 * 109.47070 * 0.02562 * 13 11 9
15 15 H 1.48494 * 109.47453 * 120.00055 * 13 11 9
16 16 H 1.48502 * 109.47247 * 240.00167 * 13 11 9
17 17 C 1.46499 * 120.00212 * 103.63909 * 5 2 1
18 18 H 1.09003 * 110.98185 * 38.36674 * 17 5 2
19 19 C 1.54973 * 111.12260 * 162.55006 * 17 5 2
20 20 O 1.43710 * 105.13494 * 81.59367 * 19 17 5
21 21 C 1.43023 * 109.87101 * 24.41987 * 20 19 17
22 22 C 1.54165 * 107.82877 * 358.19852 * 21 20 19
23 23 C 1.52879 * 110.07215 * 238.79125 * 21 20 19
24 24 C 1.53089 * 109.26586 * 295.66819 * 23 21 20
25 25 N 1.46850 * 109.49386 * 301.28689 * 24 23 21
26 26 C 1.46851 * 111.27694 * 61.96902 * 25 24 23
27 27 C 1.52889 * 110.05891 * 117.58370 * 21 20 19
28 28 H 1.09005 * 109.46994 * 292.55086 * 1 2 3
29 29 H 1.08992 * 109.47340 * 52.54738 * 1 2 3
30 30 H 1.09004 * 109.47245 * 172.55204 * 1 2 3
31 31 H 1.09004 * 109.46739 * 152.23598 * 3 2 1
32 32 H 1.08993 * 109.47387 * 272.23759 * 3 2 1
33 33 H 1.08997 * 109.47024 * 32.23762 * 3 2 1
34 34 H 1.09002 * 109.47068 * 300.00116 * 4 2 1
35 35 H 1.09001 * 109.46848 * 59.99711 * 4 2 1
36 36 H 1.08999 * 109.46941 * 179.97438 * 4 2 1
37 37 H 1.09000 * 109.47107 * 278.71491 * 8 6 5
38 38 H 1.09004 * 109.46604 * 38.70991 * 8 6 5
39 39 H 0.96999 * 120.00224 * 180.02562 * 12 11 9
40 40 H 1.09002 * 110.30337 * 322.68255 * 19 17 5
41 41 H 1.08994 * 110.30902 * 200.51215 * 19 17 5
42 42 H 1.08997 * 110.85836 * 96.98080 * 22 21 20
43 43 H 1.09006 * 110.85349 * 220.62363 * 22 21 20
44 44 H 1.09001 * 109.50939 * 55.59965 * 23 21 20
45 45 H 1.08999 * 109.50666 * 175.73007 * 23 21 20
46 46 H 1.08994 * 109.47325 * 181.28453 * 24 23 21
47 47 H 1.09001 * 109.46640 * 61.29008 * 24 23 21
48 48 H 1.00900 * 110.99536 * 186.12332 * 25 24 23
49 49 H 1.08999 * 109.47176 * 178.00957 * 26 25 24
50 50 H 1.09010 * 109.46173 * 58.02079 * 26 25 24
51 51 H 1.08998 * 109.50951 * 184.26291 * 27 21 20
52 52 H 1.09002 * 109.50442 * 304.35352 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 7 2.0184 -0.6906 1.1961
6 6 1.9834 -0.0719 2.3930
7 8 2.4194 -0.6304 3.3773
8 6 1.4027 1.3139 2.5082
9 6 0.9983 1.5719 3.9368
10 1 1.1473 0.8089 4.6864
11 6 0.4381 2.7821 4.2868
12 7 0.2562 3.7112 3.3739
13 14 -0.0626 3.1023 6.0578
14 1 0.2456 1.9069 6.8831
15 1 0.6887 4.2714 6.5810
16 1 -1.5195 3.3833 6.1173
17 6 2.5446 -2.0538 1.0913
18 1 3.1220 -2.1800 0.1754
19 6 3.3873 -2.4245 2.3380
20 8 2.4293 -2.8130 3.3364
21 6 1.2242 -3.2570 2.7070
22 6 1.4030 -3.1033 1.1835
23 6 0.0443 -2.4029 3.1713
24 6 -0.1706 -2.6118 4.6726
25 7 -0.4255 -4.0335 4.9379
26 6 0.7231 -4.8623 4.5502
27 6 0.9664 -4.7257 3.0450
28 1 -0.3633 0.3941 0.9491
29 1 -0.3633 0.6249 -0.8157
30 1 -0.3634 -1.0190 -0.1332
31 1 3.0185 1.4819 0.4787
32 1 2.1233 1.7985 -1.0268
33 1 1.3416 2.0748 0.5482
34 1 1.6766 -1.7489 -1.2493
35 1 1.6766 -0.2074 -2.1392
36 1 3.1300 -0.7208 -1.2495
37 1 2.1494 2.0472 2.2037
38 1 0.5283 1.3962 1.8626
39 1 -0.1376 4.5627 3.6202
40 1 3.9593 -1.5613 2.6782
41 1 4.0545 -3.2557 2.1102
42 1 1.7062 -4.0475 0.7311
43 1 0.4905 -2.7259 0.7218
44 1 0.2573 -1.3517 2.9771
45 1 -0.8544 -2.6988 2.6303
46 1 -1.0255 -2.0218 5.0028
47 1 0.7205 -2.2953 5.2147
48 1 -0.6688 -4.1827 5.9057
49 1 0.5168 -5.9049 4.7918
50 1 1.6089 -4.5320 5.0929
51 1 0.0890 -5.0757 2.5012
52 1 1.8331 -5.3222 2.7602
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001143194471.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:58
Heat of formation + Delta-G solvation = -52.222142 kcal
Electronic energy + Delta-G solvation = -32035.688604 eV
Core-core repulsion = 28229.144015 eV
Total energy + Delta-G solvation = -3806.544589 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-40.89019 -38.68757 -36.48829 -36.29126 -33.11548 -32.26277 -31.48857 -30.47079
-30.14396 -28.48906 -27.10809 -26.76295 -25.74891 -23.57003 -22.81673 -22.03782
-21.00738 -20.54691 -19.09462 -17.69307 -16.74967 -16.39893 -16.03716 -15.41572
-15.23209 -14.72414 -14.66186 -14.33219 -14.09458 -14.05300 -13.68093 -13.54976
-13.30535 -12.92381 -12.69539 -12.42899 -12.28236 -12.19263 -12.02278 -11.89327
-11.70886 -11.62180 -11.51695 -11.46052 -11.17264 -11.03007 -10.83106 -10.79396
-10.72450 -10.59041 -10.43406 -10.27872 -10.19661 -9.90736 -9.82019 -8.93606
-8.72512 -8.38249 -8.15108 -8.12462 -7.94745 -6.03880 -4.01547 3.33154
3.40846 3.46658 3.55780 3.77676 4.21530 4.49676 4.56275 4.75318
4.94637 5.00258 5.14907 5.18933 5.28852 5.29088 5.31641 5.35416
5.40368 5.55005 5.64267 5.70390 5.76076 5.78805 5.84391 5.86828
5.93743 5.98529 5.99583 6.03209 6.05565 6.14740 6.21300 6.24078
6.29875 6.33063 6.38164 6.49070 6.52693 6.61159 6.67765 6.76870
6.79560 7.17550 7.35695 7.37751 7.40862 7.63273 7.75585 7.98138
8.06885 8.45357 9.07566 9.36440 9.62904 11.08216
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.010453 B = 0.006802 C = 0.004708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2678.096234 B = 4115.543726 C = 5946.164024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.173 3.827
3 C -0.173 4.173
4 C -0.151 4.151
5 N -0.614 5.614
6 C 0.506 3.494
7 O -0.504 6.504
8 C -0.004 4.004
9 C -0.501 4.501
10 H 0.071 0.929
11 C 0.056 3.944
12 N -0.900 5.900
13 Si 0.893 3.107
14 H -0.271 1.271
15 H -0.285 1.285
16 H -0.285 1.285
17 C 0.108 3.892
18 H 0.091 0.909
19 C 0.068 3.932
20 O -0.334 6.334
21 C 0.113 3.887
22 C -0.162 4.162
23 C -0.110 4.110
24 C 0.065 3.935
25 N -0.694 5.694
26 C 0.063 3.937
27 C -0.116 4.116
28 H 0.079 0.921
29 H 0.061 0.939
30 H 0.050 0.950
31 H 0.059 0.941
32 H 0.053 0.947
33 H 0.096 0.904
34 H 0.058 0.942
35 H 0.066 0.934
36 H 0.058 0.942
37 H 0.052 0.948
38 H 0.053 0.947
39 H 0.260 0.740
40 H 0.097 0.903
41 H 0.039 0.961
42 H 0.074 0.926
43 H 0.082 0.918
44 H 0.088 0.912
45 H 0.059 0.941
46 H 0.068 0.932
47 H 0.046 0.954
48 H 0.336 0.664
49 H 0.063 0.937
50 H 0.036 0.964
51 H 0.071 0.929
52 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.829 -13.160 -8.931 16.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.088 3.912
3 C -0.231 4.231
4 C -0.208 4.208
5 N -0.352 5.352
6 C 0.298 3.702
7 O -0.378 6.378
8 C -0.042 4.042
9 C -0.539 4.539
10 H 0.089 0.911
11 C -0.144 4.144
12 N -0.540 5.540
13 Si 0.722 3.278
14 H -0.196 1.196
15 H -0.211 1.211
16 H -0.211 1.211
17 C 0.003 3.997
18 H 0.109 0.891
19 C -0.009 4.009
20 O -0.252 6.252
21 C 0.073 3.927
22 C -0.201 4.201
23 C -0.148 4.148
24 C -0.064 4.064
25 N -0.325 5.325
26 C -0.066 4.066
27 C -0.154 4.154
28 H 0.098 0.902
29 H 0.080 0.920
30 H 0.069 0.931
31 H 0.078 0.922
32 H 0.072 0.928
33 H 0.115 0.885
34 H 0.077 0.923
35 H 0.085 0.915
36 H 0.077 0.923
37 H 0.070 0.930
38 H 0.070 0.930
39 H 0.069 0.931
40 H 0.115 0.885
41 H 0.057 0.943
42 H 0.093 0.907
43 H 0.101 0.899
44 H 0.106 0.894
45 H 0.078 0.922
46 H 0.086 0.914
47 H 0.064 0.936
48 H 0.152 0.848
49 H 0.082 0.918
50 H 0.054 0.946
51 H 0.089 0.911
52 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.716 -13.356 -8.753 16.060
hybrid contribution 0.219 0.491 1.174 1.291
sum 1.935 -12.864 -7.579 15.056
Atomic orbital electron populations
1.22453 0.94884 1.01385 1.03731 1.20249 0.93764 0.92698 0.84526
1.22797 1.03068 0.95361 1.01858 1.22146 1.01220 1.00529 0.96949
1.48371 1.65002 1.13390 1.08393 1.21922 0.77735 0.89583 0.80960
1.90716 1.45002 1.65942 1.36177 1.19866 0.97354 0.87477 0.99524
1.21227 1.39023 1.00189 0.93493 0.91108 1.24939 0.95989 0.96081
0.97399 1.69946 1.45206 1.05884 1.33006 0.86492 0.77941 0.78235
0.85170 1.19591 1.21133 1.21142 1.22586 0.94245 0.83397 0.99436
0.89112 1.23367 0.92023 0.98488 0.86976 1.88545 1.22845 1.83908
1.29934 1.21717 0.87552 0.92751 0.90672 1.23673 1.00508 0.99073
0.96819 1.21846 0.95899 1.01561 0.95465 1.21783 1.00389 0.87180
0.97067 1.60387 1.38366 1.07757 1.25975 1.21774 0.92321 0.96528
0.96007 1.21886 1.00983 0.96047 0.96455 0.90244 0.92030 0.93114
0.92189 0.92791 0.88540 0.92329 0.91533 0.92298 0.93036 0.92983
0.93090 0.88532 0.94288 0.90729 0.89949 0.89375 0.92240 0.91378
0.93612 0.84768 0.91844 0.94553 0.91069 0.91960
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.41 8.38 37.16 0.31 -2.10 16
2 C 0.17 2.47 0.98 -131.82 -0.13 2.34 16
3 C -0.17 -2.70 7.15 37.16 0.27 -2.43 16
4 C -0.15 -1.64 7.06 37.16 0.26 -1.38 16
5 N -0.61 -10.17 2.41 -148.81 -0.36 -10.53 16
6 C 0.51 10.75 4.26 -10.98 -0.05 10.70 16
7 O -0.50 -11.94 9.44 -19.30 -0.18 -12.12 16
8 C 0.00 -0.09 3.08 -29.04 -0.09 -0.18 16
9 C -0.50 -13.92 8.89 -34.44 -0.31 -14.22 16
10 H 0.07 2.08 6.96 -52.49 -0.37 1.72 16
11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16
12 N -0.90 -25.57 13.29 55.43 0.74 -24.83 16
13 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16
14 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16
15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
16 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16
17 C 0.11 1.56 2.86 -65.64 -0.19 1.37 16
18 H 0.09 1.09 6.17 -51.93 -0.32 0.77 16
19 C 0.07 1.13 6.38 38.20 0.24 1.37 16
20 O -0.33 -6.26 7.56 -60.08 -0.45 -6.71 16
21 C 0.11 1.80 0.62 -90.13 -0.06 1.75 16
22 C -0.16 -2.19 5.54 -24.88 -0.14 -2.32 16
23 C -0.11 -1.98 4.58 -26.75 -0.12 -2.10 16
24 C 0.06 1.17 6.44 -3.81 -0.02 1.14 16
25 N -0.69 -10.46 6.84 -113.75 -0.78 -11.24 16
26 C 0.06 0.89 6.44 -3.80 -0.02 0.87 16
27 C -0.12 -1.60 4.95 -26.74 -0.13 -1.73 16
28 H 0.08 1.42 5.64 -51.93 -0.29 1.12 16
29 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16
30 H 0.05 0.67 6.97 -51.93 -0.36 0.31 16
31 H 0.06 1.00 7.24 -51.93 -0.38 0.62 16
32 H 0.05 0.69 7.85 -51.93 -0.41 0.29 16
33 H 0.10 1.79 5.01 -51.93 -0.26 1.53 16
34 H 0.06 0.59 7.10 -51.93 -0.37 0.23 16
35 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16
36 H 0.06 0.62 7.63 -51.93 -0.40 0.22 16
37 H 0.05 1.31 6.35 -51.93 -0.33 0.98 16
38 H 0.05 1.24 3.81 -51.93 -0.20 1.04 16
39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16
40 H 0.10 1.84 6.38 -51.93 -0.33 1.51 16
41 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
42 H 0.07 0.84 7.83 -51.93 -0.41 0.44 16
43 H 0.08 1.12 6.62 -51.93 -0.34 0.78 16
44 H 0.09 1.86 4.87 -51.93 -0.25 1.60 16
45 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16
46 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
47 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16
48 H 0.34 4.45 8.90 -39.29 -0.35 4.10 16
49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
50 H 0.04 0.58 7.85 -51.92 -0.41 0.17 16
51 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16
52 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
LS Contribution 367.88 15.07 5.54 5.54
Total: -1.00 -30.30 367.88 -9.48 -39.77
By element:
Atomic # 1 Polarization: 17.33 SS G_CDS: -8.69 Total: 8.64 kcal
Atomic # 6 Polarization: -5.17 SS G_CDS: -0.27 Total: -5.45 kcal
Atomic # 7 Polarization: -46.19 SS G_CDS: -0.40 Total: -46.59 kcal
Atomic # 8 Polarization: -18.20 SS G_CDS: -0.64 Total: -18.84 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -30.30 -9.48 -39.77 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143194471.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.450 kcal
(2) G-P(sol) polarization free energy of solvation -30.296 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.747 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds