Wall clock time and date at job start Tue Mar 31 2020 13:56:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.47089 * 2 1
4 4 C 1.53000 * 109.46912 * 240.00126 * 2 1 3
5 5 N 1.46496 * 109.47295 * 120.00215 * 2 1 3
6 6 C 1.34781 * 119.99880 * 283.64754 * 5 2 1
7 7 O 1.21284 * 120.00001 * 181.89963 * 6 5 2
8 8 C 1.50699 * 120.00338 * 1.89290 * 6 5 2
9 9 C 1.50697 * 109.47151 * 158.70503 * 8 6 5
10 10 H 1.07998 * 120.00068 * 0.02562 * 9 8 6
11 11 C 1.37875 * 119.99851 * 180.02562 * 9 8 6
12 12 N 1.31517 * 120.00112 * 0.02562 * 11 9 8
13 13 Si 1.86800 * 120.00132 * 180.02562 * 11 9 8
14 14 H 1.48500 * 109.47070 * 0.02562 * 13 11 9
15 15 H 1.48494 * 109.47453 * 120.00055 * 13 11 9
16 16 H 1.48502 * 109.47247 * 240.00167 * 13 11 9
17 17 C 1.46499 * 120.00212 * 103.63909 * 5 2 1
18 18 H 1.09003 * 110.98185 * 38.36674 * 17 5 2
19 19 C 1.54973 * 111.12260 * 162.55006 * 17 5 2
20 20 O 1.43710 * 105.13494 * 81.59367 * 19 17 5
21 21 C 1.43023 * 109.87101 * 24.41987 * 20 19 17
22 22 C 1.54165 * 107.82877 * 358.19852 * 21 20 19
23 23 C 1.52879 * 110.07215 * 238.79125 * 21 20 19
24 24 C 1.53089 * 109.26586 * 295.66819 * 23 21 20
25 25 N 1.46850 * 109.49386 * 301.28689 * 24 23 21
26 26 C 1.46851 * 111.27694 * 61.96902 * 25 24 23
27 27 C 1.52889 * 110.05891 * 117.58370 * 21 20 19
28 28 H 1.09005 * 109.46994 * 292.55086 * 1 2 3
29 29 H 1.08992 * 109.47340 * 52.54738 * 1 2 3
30 30 H 1.09004 * 109.47245 * 172.55204 * 1 2 3
31 31 H 1.09004 * 109.46739 * 152.23598 * 3 2 1
32 32 H 1.08993 * 109.47387 * 272.23759 * 3 2 1
33 33 H 1.08997 * 109.47024 * 32.23762 * 3 2 1
34 34 H 1.09002 * 109.47068 * 300.00116 * 4 2 1
35 35 H 1.09001 * 109.46848 * 59.99711 * 4 2 1
36 36 H 1.08999 * 109.46941 * 179.97438 * 4 2 1
37 37 H 1.09000 * 109.47107 * 278.71491 * 8 6 5
38 38 H 1.09004 * 109.46604 * 38.70991 * 8 6 5
39 39 H 0.96999 * 120.00224 * 180.02562 * 12 11 9
40 40 H 1.09002 * 110.30337 * 322.68255 * 19 17 5
41 41 H 1.08994 * 110.30902 * 200.51215 * 19 17 5
42 42 H 1.08997 * 110.85836 * 96.98080 * 22 21 20
43 43 H 1.09006 * 110.85349 * 220.62363 * 22 21 20
44 44 H 1.09001 * 109.50939 * 55.59965 * 23 21 20
45 45 H 1.08999 * 109.50666 * 175.73007 * 23 21 20
46 46 H 1.08994 * 109.47325 * 181.28453 * 24 23 21
47 47 H 1.09001 * 109.46640 * 61.29008 * 24 23 21
48 48 H 1.00900 * 110.99536 * 186.12332 * 25 24 23
49 49 H 1.08999 * 109.47176 * 178.00957 * 26 25 24
50 50 H 1.09010 * 109.46173 * 58.02079 * 26 25 24
51 51 H 1.08998 * 109.50951 * 184.26291 * 27 21 20
52 52 H 1.09002 * 109.50442 * 304.35352 * 27 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 7 2.0184 -0.6906 1.1961
6 6 1.9834 -0.0719 2.3930
7 8 2.4194 -0.6304 3.3773
8 6 1.4027 1.3139 2.5082
9 6 0.9983 1.5719 3.9368
10 1 1.1473 0.8089 4.6864
11 6 0.4381 2.7821 4.2868
12 7 0.2562 3.7112 3.3739
13 14 -0.0626 3.1023 6.0578
14 1 0.2456 1.9069 6.8831
15 1 0.6887 4.2714 6.5810
16 1 -1.5195 3.3833 6.1173
17 6 2.5446 -2.0538 1.0913
18 1 3.1220 -2.1800 0.1754
19 6 3.3873 -2.4245 2.3380
20 8 2.4293 -2.8130 3.3364
21 6 1.2242 -3.2570 2.7070
22 6 1.4030 -3.1033 1.1835
23 6 0.0443 -2.4029 3.1713
24 6 -0.1706 -2.6118 4.6726
25 7 -0.4255 -4.0335 4.9379
26 6 0.7231 -4.8623 4.5502
27 6 0.9664 -4.7257 3.0450
28 1 -0.3633 0.3941 0.9491
29 1 -0.3633 0.6249 -0.8157
30 1 -0.3634 -1.0190 -0.1332
31 1 3.0185 1.4819 0.4787
32 1 2.1233 1.7985 -1.0268
33 1 1.3416 2.0748 0.5482
34 1 1.6766 -1.7489 -1.2493
35 1 1.6766 -0.2074 -2.1392
36 1 3.1300 -0.7208 -1.2495
37 1 2.1494 2.0472 2.2037
38 1 0.5283 1.3962 1.8626
39 1 -0.1376 4.5627 3.6202
40 1 3.9593 -1.5613 2.6782
41 1 4.0545 -3.2557 2.1102
42 1 1.7062 -4.0475 0.7311
43 1 0.4905 -2.7259 0.7218
44 1 0.2573 -1.3517 2.9771
45 1 -0.8544 -2.6988 2.6303
46 1 -1.0255 -2.0218 5.0028
47 1 0.7205 -2.2953 5.2147
48 1 -0.6688 -4.1827 5.9057
49 1 0.5168 -5.9049 4.7918
50 1 1.6089 -4.5320 5.0929
51 1 0.0890 -5.0757 2.5012
52 1 1.8331 -5.3222 2.7602
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001143194471.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:56:57
Heat of formation + Delta-G solvation = -72.097575 kcal
Electronic energy + Delta-G solvation = -32036.550467 eV
Core-core repulsion = 28229.144015 eV
Total energy + Delta-G solvation = -3807.406452 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.22782 -40.03232 -37.92403 -37.62886 -35.13109 -33.64505 -32.75626 -31.76432
-31.67657 -30.07918 -28.23192 -28.12901 -26.98752 -25.44823 -24.07856 -23.40715
-22.22854 -21.94549 -20.35624 -19.16844 -18.57065 -17.79581 -17.39900 -16.92258
-16.69406 -16.43912 -16.07238 -15.77557 -15.36625 -15.35186 -14.96040 -14.88238
-14.79801 -14.41473 -14.12608 -13.95092 -13.54758 -13.41629 -13.26816 -13.25053
-13.05206 -12.88699 -12.79621 -12.76303 -12.65875 -12.61900 -12.43916 -12.25924
-12.10001 -12.00722 -11.88962 -11.75889 -11.66396 -11.49564 -11.07340 -10.88186
-10.55058 -10.00264 -9.80410 -9.46015 -9.32301 -8.22185 -6.25727 1.32730
1.34650 1.47991 2.09760 2.22408 2.43090 3.01297 3.12818 3.31982
3.57523 3.81506 3.90330 3.94401 4.03643 4.06825 4.15998 4.17878
4.29656 4.32031 4.43069 4.48272 4.53310 4.66548 4.68873 4.75068
4.78505 4.81190 4.86392 4.91514 4.93501 4.98450 5.01587 5.03070
5.06770 5.08619 5.13171 5.18625 5.24183 5.28957 5.34686 5.38299
5.39596 5.47764 5.56402 5.73750 6.02288 6.04404 6.15695 6.44506
6.54845 6.72567 6.88447 7.39810 7.76466 8.89499
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.010453 B = 0.006802 C = 0.004708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2678.096234 B = 4115.543726 C = 5946.164024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.166 3.834
3 C -0.168 4.168
4 C -0.143 4.143
5 N -0.604 5.604
6 C 0.511 3.489
7 O -0.536 6.536
8 C 0.006 3.994
9 C -0.520 4.520
10 H 0.044 0.956
11 C 0.015 3.985
12 N -0.921 5.921
13 Si 0.948 3.052
14 H -0.281 1.281
15 H -0.276 1.276
16 H -0.272 1.272
17 C 0.107 3.893
18 H 0.131 0.869
19 C 0.063 3.937
20 O -0.366 6.366
21 C 0.106 3.894
22 C -0.150 4.150
23 C -0.108 4.108
24 C 0.072 3.928
25 N -0.684 5.684
26 C 0.060 3.940
27 C -0.110 4.110
28 H 0.035 0.965
29 H 0.080 0.920
30 H 0.068 0.932
31 H 0.041 0.959
32 H 0.085 0.915
33 H 0.057 0.943
34 H 0.076 0.924
35 H 0.088 0.912
36 H 0.067 0.933
37 H 0.031 0.969
38 H 0.053 0.947
39 H 0.264 0.736
40 H 0.058 0.942
41 H 0.072 0.928
42 H 0.113 0.887
43 H 0.084 0.916
44 H 0.050 0.950
45 H 0.069 0.931
46 H 0.056 0.944
47 H 0.004 0.996
48 H 0.345 0.655
49 H 0.094 0.906
50 H 0.012 0.988
51 H 0.087 0.913
52 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.628 -15.874 -11.604 19.730
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.082 3.918
3 C -0.226 4.226
4 C -0.200 4.200
5 N -0.339 5.339
6 C 0.302 3.698
7 O -0.413 6.413
8 C -0.033 4.033
9 C -0.558 4.558
10 H 0.062 0.938
11 C -0.184 4.184
12 N -0.561 5.561
13 Si 0.774 3.226
14 H -0.206 1.206
15 H -0.201 1.201
16 H -0.197 1.197
17 C 0.004 3.996
18 H 0.148 0.852
19 C -0.013 4.013
20 O -0.286 6.286
21 C 0.066 3.934
22 C -0.189 4.189
23 C -0.146 4.146
24 C -0.057 4.057
25 N -0.315 5.315
26 C -0.069 4.069
27 C -0.148 4.148
28 H 0.054 0.946
29 H 0.099 0.901
30 H 0.087 0.913
31 H 0.060 0.940
32 H 0.104 0.896
33 H 0.076 0.924
34 H 0.095 0.905
35 H 0.106 0.894
36 H 0.086 0.914
37 H 0.048 0.952
38 H 0.071 0.929
39 H 0.073 0.927
40 H 0.077 0.923
41 H 0.090 0.910
42 H 0.132 0.868
43 H 0.103 0.897
44 H 0.069 0.931
45 H 0.087 0.913
46 H 0.074 0.926
47 H 0.022 0.978
48 H 0.163 0.837
49 H 0.112 0.888
50 H 0.030 0.970
51 H 0.105 0.895
52 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 1.508 -16.080 -11.467 19.807
hybrid contribution 0.280 1.365 2.030 2.462
sum 1.788 -14.715 -9.436 17.572
Atomic orbital electron populations
1.22378 0.94963 1.02520 1.01998 1.20517 0.93743 0.92201 0.85320
1.22678 1.00890 0.96070 1.02924 1.22112 1.01761 1.01159 0.95006
1.48209 1.63853 1.14477 1.07405 1.21251 0.77648 0.88673 0.82278
1.90715 1.46417 1.66374 1.37786 1.19669 0.96890 0.89449 0.97308
1.21380 1.39581 0.99874 0.94999 0.93820 1.25594 0.95958 0.95872
1.00949 1.70018 1.45553 1.06155 1.34400 0.85648 0.78295 0.77754
0.80865 1.20575 1.20132 1.19744 1.22862 0.94848 0.81881 1.00045
0.85158 1.23399 0.92207 0.98351 0.87368 1.88522 1.24042 1.84258
1.31758 1.21866 0.85636 0.93488 0.92394 1.23666 1.00046 1.00286
0.94888 1.21787 0.97648 1.00026 0.95156 1.21573 0.97871 0.89085
0.97206 1.60411 1.38639 1.05672 1.26815 1.21896 0.90827 0.97621
0.96522 1.21887 1.02527 0.94472 0.95922 0.94619 0.90148 0.91336
0.94026 0.89588 0.92445 0.90525 0.89365 0.91440 0.95166 0.92918
0.92702 0.92329 0.90981 0.86830 0.89715 0.93100 0.91290 0.92563
0.97811 0.83720 0.88775 0.96959 0.89492 0.89820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.49 8.38 71.98 0.60 -3.89 16
2 C 0.17 4.52 0.98 3.61 0.00 4.52 16
3 C -0.17 -5.25 7.15 71.98 0.51 -4.73 16
4 C -0.14 -2.46 7.06 71.98 0.51 -1.95 16
5 N -0.60 -19.80 2.41 -743.11 -1.79 -21.59 16
6 C 0.51 22.91 4.26 87.66 0.37 23.29 16
7 O -0.54 -27.17 9.44 20.72 0.20 -26.97 16
8 C 0.01 0.30 3.08 29.10 0.09 0.38 16
9 C -0.52 -30.91 8.89 25.60 0.23 -30.68 16
10 H 0.04 2.79 6.96 -2.91 -0.02 2.77 16
11 C 0.01 0.85 5.46 84.65 0.46 1.31 16
12 N -0.92 -54.21 13.29 21.45 0.28 -53.92 16
13 Si 0.95 46.74 29.54 68.60 2.03 48.76 16
14 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16
15 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16
16 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16
17 C 0.11 2.81 2.86 46.47 0.13 2.95 16
18 H 0.13 2.46 6.17 -2.39 -0.01 2.45 16
19 C 0.06 2.04 6.38 72.66 0.46 2.50 16
20 O -0.37 -13.86 7.56 -125.22 -0.95 -14.80 16
21 C 0.11 3.23 0.62 -10.48 -0.01 3.22 16
22 C -0.15 -3.49 5.54 31.80 0.18 -3.32 16
23 C -0.11 -3.97 4.58 30.58 0.14 -3.83 16
24 C 0.07 2.75 6.44 86.34 0.56 3.31 16
25 N -0.68 -20.34 6.84 -513.80 -3.51 -23.86 16
26 C 0.06 1.61 6.44 86.34 0.56 2.17 16
27 C -0.11 -2.70 4.95 30.59 0.15 -2.55 16
28 H 0.03 1.31 5.64 -2.38 -0.01 1.30 16
29 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16
30 H 0.07 1.65 6.97 -2.39 -0.02 1.63 16
31 H 0.04 1.42 7.24 -2.38 -0.02 1.41 16
32 H 0.09 2.07 7.85 -2.39 -0.02 2.06 16
33 H 0.06 2.25 5.01 -2.39 -0.01 2.23 16
34 H 0.08 1.09 7.10 -2.39 -0.02 1.08 16
35 H 0.09 1.21 8.11 -2.39 -0.02 1.19 16
36 H 0.07 1.09 7.63 -2.39 -0.02 1.07 16
37 H 0.03 1.67 6.35 -2.39 -0.02 1.65 16
38 H 0.05 2.71 3.81 -2.39 -0.01 2.70 16
39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16
40 H 0.06 2.31 6.38 -2.39 -0.02 2.30 16
41 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16
42 H 0.11 1.84 7.83 -2.39 -0.02 1.82 16
43 H 0.08 1.97 6.62 -2.38 -0.02 1.95 16
44 H 0.05 2.26 4.87 -2.39 -0.01 2.25 16
45 H 0.07 2.32 8.12 -2.39 -0.02 2.30 16
46 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
47 H 0.00 0.16 7.85 -2.39 -0.02 0.14 16
48 H 0.35 9.06 8.90 -89.69 -0.80 8.26 16
49 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
50 H 0.01 0.39 7.85 -2.38 -0.02 0.37 16
51 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16
52 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16
Total: -1.00 -72.73 367.88 1.34 -71.39
By element:
Atomic # 1 Polarization: 28.17 SS G_CDS: 0.13 Total: 28.30 kcal
Atomic # 6 Polarization: -12.27 SS G_CDS: 4.95 Total: -7.31 kcal
Atomic # 7 Polarization: -94.35 SS G_CDS: -5.02 Total: -99.36 kcal
Atomic # 8 Polarization: -41.02 SS G_CDS: -0.75 Total: -41.77 kcal
Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal
Total: -72.73 1.34 -71.39 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001143194471.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.708 kcal
(2) G-P(sol) polarization free energy of solvation -72.725 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.433 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.390 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds