Wall clock time and date at job start Tue Mar 31 2020 13:57:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53002 * 109.47148 * 2 1
4 4 C 1.52999 * 109.46974 * 180.02562 * 3 2 1
5 5 N 1.46499 * 109.47304 * 180.02562 * 4 3 2
6 6 C 1.37099 * 120.00093 * 270.00266 * 5 4 3
7 7 H 1.07991 * 120.00042 * 144.58549 * 6 5 4
8 8 C 1.38956 * 119.99691 * 324.58360 * 6 5 4
9 9 N 1.31406 * 119.99970 * 337.66522 * 8 6 5
10 10 Si 1.86795 * 119.99869 * 157.66468 * 8 6 5
11 11 H 1.48504 * 109.47281 * 59.99817 * 10 8 6
12 12 H 1.48500 * 109.46971 * 180.02562 * 10 8 6
13 13 H 1.48502 * 109.47227 * 299.99976 * 10 8 6
14 14 C 1.34779 * 120.00070 * 89.99308 * 5 4 3
15 15 O 1.21291 * 120.00175 * 355.09503 * 14 5 4
16 16 C 1.50701 * 119.99862 * 175.09039 * 14 5 4
17 17 H 1.09000 * 110.98732 * 329.10606 * 16 14 5
18 18 C 1.54962 * 111.12297 * 93.30230 * 16 14 5
19 19 O 1.43721 * 105.13997 * 154.25255 * 18 16 14
20 20 C 1.42975 * 109.92178 * 335.66510 * 19 18 16
21 21 C 1.54329 * 107.78757 * 1.70024 * 20 19 18
22 22 C 1.54633 * 109.15229 * 119.17320 * 20 19 18
23 23 C 1.45921 * 111.40550 * 45.65536 * 22 20 19
24 24 C 1.53854 * 112.82694 * 61.39188 * 23 22 20
25 25 N 1.44282 * 108.15767 * 277.95029 * 24 23 22
26 26 C 1.47956 * 113.51495 * 95.63621 * 25 24 23
27 27 C 1.50471 * 111.58022 * 240.05284 * 20 19 18
28 28 H 1.09005 * 109.47208 * 299.99495 * 1 2 3
29 29 H 1.09004 * 109.47457 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47639 * 59.99187 * 1 2 3
31 31 H 1.08993 * 109.47896 * 120.00732 * 2 1 3
32 32 H 1.09007 * 109.46468 * 240.00507 * 2 1 3
33 33 H 1.08998 * 109.47556 * 300.00381 * 3 2 1
34 34 H 1.09000 * 109.46726 * 60.00617 * 3 2 1
35 35 H 1.09005 * 109.47383 * 299.99953 * 4 3 2
36 36 H 1.08996 * 109.47354 * 59.99909 * 4 3 2
37 37 H 0.97002 * 120.00224 * 185.13781 * 9 8 6
38 38 H 1.08998 * 110.30908 * 273.16646 * 18 16 14
39 39 H 1.08996 * 110.31021 * 35.33954 * 18 16 14
40 40 H 1.08997 * 110.84482 * 263.11780 * 21 20 19
41 41 H 1.09004 * 110.89988 * 139.45277 * 21 20 19
42 42 H 1.08995 * 109.09242 * 166.15190 * 22 20 19
43 43 H 1.09004 * 109.08880 * 285.15309 * 22 20 19
44 44 H 1.09001 * 108.81273 * 182.26068 * 23 22 20
45 45 H 1.09004 * 108.80801 * 300.52975 * 23 22 20
46 46 H 1.09002 * 109.72345 * 37.60580 * 24 23 22
47 47 H 1.08997 * 109.73199 * 158.23596 * 24 23 22
48 48 H 1.00900 * 110.99646 * 221.48288 * 25 24 23
49 49 H 1.09000 * 108.72832 * 79.29321 * 26 25 24
50 50 H 1.09003 * 108.72540 * 197.46417 * 26 25 24
51 51 H 1.08992 * 108.75477 * 91.64711 * 27 20 19
52 52 H 1.08992 * 108.75541 * 209.77272 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4425 -0.0006
5 7 4.0583 2.8236 0.0000
6 6 4.2863 3.4707 -1.1870
7 1 4.0854 4.5283 -1.2728
8 6 4.7760 2.7656 -2.2797
9 7 5.4242 1.6373 -2.0967
10 14 4.5127 3.4216 -4.0087
11 1 5.1454 4.7595 -4.1323
12 1 5.1260 2.4909 -4.9900
13 1 3.0569 3.5358 -4.2786
14 6 4.2834 3.4583 1.1675
15 8 3.9980 2.9191 2.2158
16 6 4.8897 4.8380 1.1704
17 1 5.5592 4.9720 0.3207
18 6 3.7912 5.9307 1.1936
19 8 4.4143 7.0766 1.7972
20 6 5.5056 6.6599 2.6217
21 6 5.6214 5.1250 2.5103
22 6 6.8139 7.2868 2.0865
23 6 6.6396 8.7028 1.7802
24 6 6.2548 9.5374 3.0141
25 7 4.8327 9.4065 3.2198
26 6 4.4721 8.3605 4.2021
27 6 5.3062 7.0738 4.0545
28 1 -0.3634 0.5138 0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 -0.8899
31 1 1.8934 -0.5139 0.8898
32 1 1.8932 -0.5138 -0.8901
33 1 1.6766 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 3.9337 0.9285 0.8891
36 1 3.9329 0.9288 -0.8908
37 1 5.8304 1.1833 -2.8516
38 1 3.4697 6.1656 0.1790
39 1 2.9428 5.6016 1.7936
40 1 5.1139 4.6364 3.3421
41 1 6.6655 4.8167 2.4562
42 1 7.5950 7.1783 2.8389
43 1 7.1170 6.7607 1.1812
44 1 7.5719 9.0911 1.3701
45 1 5.8574 8.8060 1.0282
46 1 6.7886 9.1675 3.8895
47 1 6.5078 10.5839 2.8441
48 1 4.4201 10.2932 3.4679
49 1 4.6174 8.7585 5.2064
50 1 3.4191 8.1092 4.0750
51 1 4.8018 6.2666 4.5855
52 1 6.2823 7.2347 4.5119
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001160728717.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:57:46
Heat of formation + Delta-G solvation = -89.263378 kcal
Electronic energy + Delta-G solvation = -29864.844429 eV
Core-core repulsion = 26056.693612 eV
Total energy + Delta-G solvation = -3808.150817 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.25304 -38.46993 -36.70508 -35.28810 -33.93411 -32.95684 -32.03994 -31.56278
-31.20276 -28.39653 -26.65327 -25.32962 -24.95800 -23.55422 -22.97842 -21.28110
-20.30419 -20.11251 -19.42270 -18.82638 -16.95842 -16.53391 -16.25607 -15.38170
-15.25333 -14.93058 -14.74342 -14.59489 -14.31243 -14.05713 -13.77066 -13.47962
-13.31001 -12.98089 -12.87118 -12.61191 -12.45914 -12.20763 -12.18957 -11.96400
-11.83479 -11.37659 -11.28541 -11.14828 -11.00068 -10.89141 -10.71418 -10.62079
-10.54015 -10.49591 -10.35790 -10.27371 -10.23949 -10.04350 -9.97065 -9.71118
-9.11460 -8.90837 -8.41239 -8.11991 -7.50980 -6.41738 -4.07999 3.09647
3.18718 3.21363 3.79607 4.06767 4.22245 4.32576 4.74625 4.83659
4.92659 4.99257 5.10199 5.15738 5.28401 5.34250 5.40551 5.49690
5.51312 5.60453 5.67230 5.72430 5.80252 5.83561 5.86038 5.90161
6.02809 6.08846 6.14607 6.20403 6.25487 6.27698 6.30624 6.35098
6.40067 6.43365 6.46967 6.49982 6.54936 6.63557 6.74123 6.74715
6.83759 6.85232 7.13570 7.30617 7.34612 7.49838 7.55031 7.66055
7.91096 8.35571 9.04737 9.50485 9.93530 10.59399
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.013510 B = 0.003916 C = 0.003342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2072.025481 B = 7149.155933 C = 8375.950422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.119 4.119
3 C -0.126 4.126
4 C 0.112 3.888
5 N -0.433 5.433
6 C -0.342 4.342
7 H 0.090 0.910
8 C 0.048 3.952
9 N -0.857 5.857
10 Si 0.912 3.088
11 H -0.271 1.271
12 H -0.284 1.284
13 H -0.271 1.271
14 C 0.477 3.523
15 O -0.607 6.607
16 C -0.122 4.122
17 H 0.105 0.895
18 C 0.066 3.934
19 O -0.340 6.340
20 C 0.122 3.878
21 C -0.130 4.130
22 C -0.118 4.118
23 C -0.112 4.112
24 C 0.070 3.930
25 N -0.684 5.684
26 C 0.083 3.917
27 C -0.123 4.123
28 H 0.050 0.950
29 H 0.046 0.954
30 H 0.051 0.949
31 H 0.056 0.944
32 H 0.058 0.942
33 H 0.058 0.942
34 H 0.051 0.949
35 H 0.051 0.949
36 H 0.107 0.893
37 H 0.271 0.729
38 H 0.085 0.915
39 H 0.054 0.946
40 H 0.086 0.914
41 H 0.074 0.926
42 H 0.056 0.944
43 H 0.066 0.934
44 H 0.049 0.951
45 H 0.082 0.918
46 H 0.033 0.967
47 H 0.058 0.942
48 H 0.336 0.664
49 H 0.019 0.981
50 H 0.071 0.929
51 H 0.072 0.928
52 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.244 9.176 6.374 11.176
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.158 4.158
3 C -0.165 4.165
4 C -0.012 4.012
5 N -0.150 5.150
6 C -0.470 4.470
7 H 0.107 0.893
8 C -0.159 4.159
9 N -0.493 5.493
10 Si 0.738 3.262
11 H -0.196 1.196
12 H -0.209 1.209
13 H -0.197 1.197
14 C 0.265 3.735
15 O -0.493 6.493
16 C -0.143 4.143
17 H 0.123 0.877
18 C -0.012 4.012
19 O -0.258 6.258
20 C 0.082 3.918
21 C -0.168 4.168
22 C -0.156 4.156
23 C -0.151 4.151
24 C -0.060 4.060
25 N -0.316 5.316
26 C -0.046 4.046
27 C -0.161 4.161
28 H 0.069 0.931
29 H 0.065 0.935
30 H 0.070 0.930
31 H 0.075 0.925
32 H 0.077 0.923
33 H 0.077 0.923
34 H 0.070 0.930
35 H 0.069 0.931
36 H 0.124 0.876
37 H 0.082 0.918
38 H 0.103 0.897
39 H 0.072 0.928
40 H 0.105 0.895
41 H 0.093 0.907
42 H 0.075 0.925
43 H 0.084 0.916
44 H 0.068 0.932
45 H 0.101 0.899
46 H 0.052 0.948
47 H 0.076 0.924
48 H 0.154 0.846
49 H 0.037 0.963
50 H 0.090 0.910
51 H 0.090 0.910
52 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -0.450 8.482 6.192 10.511
hybrid contribution 0.348 0.389 -0.238 0.574
sum -0.102 8.871 5.954 10.685
Atomic orbital electron populations
1.21756 0.96656 1.00643 1.01486 1.21431 0.94973 0.97822 1.01531
1.21880 0.97883 0.95393 1.01333 1.21461 0.91310 0.84960 1.03421
1.43468 1.54986 1.12033 1.04467 1.19371 1.45135 0.95177 0.87275
0.89264 1.25356 0.94346 0.95966 1.00247 1.69841 1.29664 1.17496
1.32311 0.86231 0.79100 0.78915 0.81917 1.19617 1.20899 1.19673
1.19982 0.81729 0.87873 0.83885 1.90502 1.57709 1.69092 1.32027
1.22662 0.98306 0.94443 0.98902 0.87665 1.23214 0.94742 0.85091
0.98132 1.88552 1.45565 1.28849 1.62884 1.21518 0.87620 0.92804
0.89850 1.23186 1.01325 0.93843 0.98461 1.20966 0.96250 0.96996
1.01380 1.20391 1.01018 0.94762 0.98888 1.21547 0.88414 0.98697
0.97339 1.58929 1.11696 1.09598 1.51348 1.21942 1.00207 0.91172
0.91231 1.21752 1.00301 0.97476 0.96537 0.93092 0.93451 0.93035
0.92475 0.92282 0.92286 0.92981 0.93073 0.87573 0.91813 0.89716
0.92811 0.89516 0.90709 0.92515 0.91567 0.93245 0.89932 0.94836
0.92392 0.84569 0.96296 0.91024 0.90979 0.91887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.13 9.91 37.15 0.37 -1.76 16
2 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16
3 C -0.13 -2.59 5.54 -26.73 -0.15 -2.74 16
4 C 0.11 2.66 4.97 -4.04 -0.02 2.64 16
5 N -0.43 -10.70 2.54 -114.81 -0.29 -10.99 16
6 C -0.34 -8.41 8.18 -14.93 -0.12 -8.54 16
7 H 0.09 2.11 6.81 -52.49 -0.36 1.76 16
8 C 0.05 1.17 4.95 -17.47 -0.09 1.08 16
9 N -0.86 -22.04 11.37 55.50 0.63 -21.41 16
10 Si 0.91 19.10 29.61 -169.99 -5.03 14.07 16
11 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16
12 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16
14 C 0.48 11.46 6.81 -10.98 -0.07 11.38 16
15 O -0.61 -15.82 15.46 5.55 0.09 -15.73 16
16 C -0.12 -2.46 2.54 -89.49 -0.23 -2.69 16
17 H 0.11 2.22 7.14 -51.93 -0.37 1.85 16
18 C 0.07 1.22 7.18 38.19 0.27 1.49 16
19 O -0.34 -5.83 8.04 -35.23 -0.28 -6.12 16
20 C 0.12 1.87 0.79 -90.33 -0.07 1.80 16
21 C -0.13 -2.30 5.31 -24.79 -0.13 -2.44 16
22 C -0.12 -1.64 4.36 -29.22 -0.13 -1.77 16
23 C -0.11 -1.44 5.18 -29.64 -0.15 -1.59 16
24 C 0.07 0.78 6.15 -4.78 -0.03 0.75 16
25 N -0.68 -8.17 5.60 -113.79 -0.64 -8.81 16
26 C 0.08 1.01 5.95 -2.70 -0.02 1.00 16
27 C -0.12 -1.63 4.80 -27.45 -0.13 -1.77 16
28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16
34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16
35 H 0.05 1.26 7.49 -51.93 -0.39 0.87 16
36 H 0.11 2.66 5.40 -51.93 -0.28 2.38 16
37 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16
38 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16
39 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16
40 H 0.09 1.65 6.48 -51.93 -0.34 1.31 16
41 H 0.07 1.26 7.78 -51.93 -0.40 0.86 16
42 H 0.06 0.71 7.64 -51.93 -0.40 0.31 16
43 H 0.07 0.98 7.99 -51.93 -0.42 0.57 16
44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
45 H 0.08 1.24 7.29 -51.93 -0.38 0.86 16
46 H 0.03 0.37 6.75 -51.93 -0.35 0.02 16
47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
48 H 0.34 3.32 8.89 -39.29 -0.35 2.97 16
49 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16
50 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16
51 H 0.07 0.98 7.35 -51.93 -0.38 0.60 16
52 H 0.06 0.76 6.68 -51.93 -0.35 0.41 16
LS Contribution 389.74 15.07 5.87 5.87
Total: -1.00 -27.86 389.74 -9.87 -37.73
By element:
Atomic # 1 Polarization: 20.08 SS G_CDS: -9.36 Total: 10.72 kcal
Atomic # 6 Polarization: -4.48 SS G_CDS: -0.86 Total: -5.33 kcal
Atomic # 7 Polarization: -40.91 SS G_CDS: -0.30 Total: -41.21 kcal
Atomic # 8 Polarization: -21.65 SS G_CDS: -0.20 Total: -21.85 kcal
Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -27.86 -9.87 -37.73 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160728717.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.535 kcal
(2) G-P(sol) polarization free energy of solvation -27.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.263 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds