Wall clock time and date at job start Tue Mar 31 2020 13:57:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53002 * 109.47148 * 2 1
4 4 C 1.52999 * 109.46974 * 180.02562 * 3 2 1
5 5 N 1.46499 * 109.47304 * 180.02562 * 4 3 2
6 6 C 1.37099 * 120.00093 * 270.00266 * 5 4 3
7 7 H 1.07991 * 120.00042 * 144.58549 * 6 5 4
8 8 C 1.38956 * 119.99691 * 324.58360 * 6 5 4
9 9 N 1.31406 * 119.99970 * 337.66522 * 8 6 5
10 10 Si 1.86795 * 119.99869 * 157.66468 * 8 6 5
11 11 H 1.48504 * 109.47281 * 59.99817 * 10 8 6
12 12 H 1.48500 * 109.46971 * 180.02562 * 10 8 6
13 13 H 1.48502 * 109.47227 * 299.99976 * 10 8 6
14 14 C 1.34779 * 120.00070 * 89.99308 * 5 4 3
15 15 O 1.21291 * 120.00175 * 355.09503 * 14 5 4
16 16 C 1.50701 * 119.99862 * 175.09039 * 14 5 4
17 17 H 1.09000 * 110.98732 * 329.10606 * 16 14 5
18 18 C 1.54962 * 111.12297 * 93.30230 * 16 14 5
19 19 O 1.43721 * 105.13997 * 154.25255 * 18 16 14
20 20 C 1.42975 * 109.92178 * 335.66510 * 19 18 16
21 21 C 1.54329 * 107.78757 * 1.70024 * 20 19 18
22 22 C 1.54633 * 109.15229 * 119.17320 * 20 19 18
23 23 C 1.45921 * 111.40550 * 45.65536 * 22 20 19
24 24 C 1.53854 * 112.82694 * 61.39188 * 23 22 20
25 25 N 1.44282 * 108.15767 * 277.95029 * 24 23 22
26 26 C 1.47956 * 113.51495 * 95.63621 * 25 24 23
27 27 C 1.50471 * 111.58022 * 240.05284 * 20 19 18
28 28 H 1.09005 * 109.47208 * 299.99495 * 1 2 3
29 29 H 1.09004 * 109.47457 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.47639 * 59.99187 * 1 2 3
31 31 H 1.08993 * 109.47896 * 120.00732 * 2 1 3
32 32 H 1.09007 * 109.46468 * 240.00507 * 2 1 3
33 33 H 1.08998 * 109.47556 * 300.00381 * 3 2 1
34 34 H 1.09000 * 109.46726 * 60.00617 * 3 2 1
35 35 H 1.09005 * 109.47383 * 299.99953 * 4 3 2
36 36 H 1.08996 * 109.47354 * 59.99909 * 4 3 2
37 37 H 0.97002 * 120.00224 * 185.13781 * 9 8 6
38 38 H 1.08998 * 110.30908 * 273.16646 * 18 16 14
39 39 H 1.08996 * 110.31021 * 35.33954 * 18 16 14
40 40 H 1.08997 * 110.84482 * 263.11780 * 21 20 19
41 41 H 1.09004 * 110.89988 * 139.45277 * 21 20 19
42 42 H 1.08995 * 109.09242 * 166.15190 * 22 20 19
43 43 H 1.09004 * 109.08880 * 285.15309 * 22 20 19
44 44 H 1.09001 * 108.81273 * 182.26068 * 23 22 20
45 45 H 1.09004 * 108.80801 * 300.52975 * 23 22 20
46 46 H 1.09002 * 109.72345 * 37.60580 * 24 23 22
47 47 H 1.08997 * 109.73199 * 158.23596 * 24 23 22
48 48 H 1.00900 * 110.99646 * 221.48288 * 25 24 23
49 49 H 1.09000 * 108.72832 * 79.29321 * 26 25 24
50 50 H 1.09003 * 108.72540 * 197.46417 * 26 25 24
51 51 H 1.08992 * 108.75477 * 91.64711 * 27 20 19
52 52 H 1.08992 * 108.75541 * 209.77272 * 27 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 3.5699 1.4425 -0.0006
5 7 4.0583 2.8236 0.0000
6 6 4.2863 3.4707 -1.1870
7 1 4.0854 4.5283 -1.2728
8 6 4.7760 2.7656 -2.2797
9 7 5.4242 1.6373 -2.0967
10 14 4.5127 3.4216 -4.0087
11 1 5.1454 4.7595 -4.1323
12 1 5.1260 2.4909 -4.9900
13 1 3.0569 3.5358 -4.2786
14 6 4.2834 3.4583 1.1675
15 8 3.9980 2.9191 2.2158
16 6 4.8897 4.8380 1.1704
17 1 5.5592 4.9720 0.3207
18 6 3.7912 5.9307 1.1936
19 8 4.4143 7.0766 1.7972
20 6 5.5056 6.6599 2.6217
21 6 5.6214 5.1250 2.5103
22 6 6.8139 7.2868 2.0865
23 6 6.6396 8.7028 1.7802
24 6 6.2548 9.5374 3.0141
25 7 4.8327 9.4065 3.2198
26 6 4.4721 8.3605 4.2021
27 6 5.3062 7.0738 4.0545
28 1 -0.3634 0.5138 0.8901
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3634 0.5139 -0.8899
31 1 1.8934 -0.5139 0.8898
32 1 1.8932 -0.5138 -0.8901
33 1 1.6766 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 3.9337 0.9285 0.8891
36 1 3.9329 0.9288 -0.8908
37 1 5.8304 1.1833 -2.8516
38 1 3.4697 6.1656 0.1790
39 1 2.9428 5.6016 1.7936
40 1 5.1139 4.6364 3.3421
41 1 6.6655 4.8167 2.4562
42 1 7.5950 7.1783 2.8389
43 1 7.1170 6.7607 1.1812
44 1 7.5719 9.0911 1.3701
45 1 5.8574 8.8060 1.0282
46 1 6.7886 9.1675 3.8895
47 1 6.5078 10.5839 2.8441
48 1 4.4201 10.2932 3.4679
49 1 4.6174 8.7585 5.2064
50 1 3.4191 8.1092 4.0750
51 1 4.8018 6.2666 4.5855
52 1 6.2823 7.2347 4.5119
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001160728717.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:57:45
Heat of formation + Delta-G solvation = -104.614846 kcal
Electronic energy + Delta-G solvation = -29865.510118 eV
Core-core repulsion = 26056.693612 eV
Total energy + Delta-G solvation = -3808.816507 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.66388 -40.18374 -37.92058 -37.09070 -35.57375 -34.05262 -33.46990 -33.23013
-32.66146 -29.97296 -27.94465 -26.87508 -26.30928 -25.14793 -24.24434 -22.81509
-21.91446 -21.10435 -20.97435 -20.41113 -18.66395 -18.08587 -17.52892 -16.81345
-16.64367 -16.42091 -16.29912 -16.08651 -15.71568 -15.61020 -15.33936 -14.73814
-14.61469 -14.39638 -14.33177 -13.82642 -13.80941 -13.68288 -13.58102 -13.31740
-13.24369 -13.03708 -12.96915 -12.74591 -12.44460 -12.17639 -12.08160 -12.06025
-11.98267 -11.85222 -11.78226 -11.70921 -11.54124 -11.45002 -11.42563 -11.21023
-10.98286 -10.34939 -10.25567 -9.46437 -9.00090 -8.32293 -6.05154 1.40764
1.48308 1.55949 1.93957 2.29524 2.76110 2.99064 3.14262 3.40287
3.58138 3.75584 3.93055 4.00549 4.06868 4.12820 4.18141 4.22779
4.23379 4.29858 4.35152 4.36713 4.47141 4.64726 4.66720 4.70563
4.73449 4.76641 4.81460 4.83264 4.87255 4.91253 4.97393 4.98943
5.04531 5.06870 5.16580 5.17786 5.20886 5.24333 5.34393 5.35591
5.42080 5.44026 5.45931 5.57813 5.67638 5.99504 6.26954 6.41863
6.42140 6.77797 7.11023 7.57182 8.00763 8.69754
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.013510 B = 0.003916 C = 0.003342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2072.025481 B = 7149.155933 C = 8375.950422
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.116 4.116
3 C -0.113 4.113
4 C 0.113 3.887
5 N -0.443 5.443
6 C -0.356 4.356
7 H 0.096 0.904
8 C 0.011 3.989
9 N -0.888 5.888
10 Si 0.977 3.023
11 H -0.263 1.263
12 H -0.282 1.282
13 H -0.267 1.267
14 C 0.464 3.536
15 O -0.635 6.635
16 C -0.118 4.118
17 H 0.095 0.905
18 C 0.077 3.923
19 O -0.340 6.340
20 C 0.123 3.877
21 C -0.125 4.125
22 C -0.116 4.116
23 C -0.112 4.112
24 C 0.073 3.927
25 N -0.699 5.699
26 C 0.086 3.914
27 C -0.123 4.123
28 H 0.051 0.949
29 H 0.071 0.929
30 H 0.055 0.945
31 H 0.057 0.943
32 H 0.061 0.939
33 H 0.053 0.947
34 H 0.037 0.963
35 H 0.030 0.970
36 H 0.094 0.906
37 H 0.274 0.726
38 H 0.087 0.913
39 H 0.042 0.958
40 H 0.070 0.930
41 H 0.080 0.920
42 H 0.076 0.924
43 H 0.050 0.950
44 H 0.066 0.934
45 H 0.057 0.943
46 H 0.041 0.959
47 H 0.079 0.921
48 H 0.349 0.651
49 H 0.042 0.958
50 H 0.056 0.944
51 H 0.064 0.936
52 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.229 10.847 6.191 12.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.154 4.154
3 C -0.152 4.152
4 C -0.011 4.011
5 N -0.160 5.160
6 C -0.483 4.483
7 H 0.113 0.887
8 C -0.193 4.193
9 N -0.524 5.524
10 Si 0.801 3.199
11 H -0.188 1.188
12 H -0.207 1.207
13 H -0.192 1.192
14 C 0.254 3.746
15 O -0.524 6.524
16 C -0.139 4.139
17 H 0.113 0.887
18 C -0.001 4.001
19 O -0.259 6.259
20 C 0.083 3.917
21 C -0.163 4.163
22 C -0.154 4.154
23 C -0.150 4.150
24 C -0.057 4.057
25 N -0.332 5.332
26 C -0.043 4.043
27 C -0.161 4.161
28 H 0.070 0.930
29 H 0.090 0.910
30 H 0.074 0.926
31 H 0.076 0.924
32 H 0.080 0.920
33 H 0.072 0.928
34 H 0.056 0.944
35 H 0.049 0.951
36 H 0.112 0.888
37 H 0.084 0.916
38 H 0.105 0.895
39 H 0.061 0.939
40 H 0.089 0.911
41 H 0.098 0.902
42 H 0.095 0.905
43 H 0.069 0.931
44 H 0.084 0.916
45 H 0.076 0.924
46 H 0.060 0.940
47 H 0.097 0.903
48 H 0.169 0.831
49 H 0.060 0.940
50 H 0.075 0.925
51 H 0.083 0.917
52 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -0.439 10.169 6.012 11.821
hybrid contribution 0.396 -0.176 -0.149 0.458
sum -0.044 9.993 5.863 11.586
Atomic orbital electron populations
1.21710 0.94125 1.02376 1.01760 1.21412 0.97155 0.95127 1.01698
1.21744 0.95435 0.97766 1.00246 1.21437 0.93426 0.84619 1.01616
1.43734 1.54973 1.12318 1.04939 1.19639 1.45574 0.95652 0.87463
0.88689 1.26138 0.93567 0.96074 1.03561 1.69941 1.30372 1.18674
1.33429 0.85231 0.79026 0.78510 0.77171 1.18781 1.20715 1.19240
1.20616 0.81419 0.89202 0.83341 1.90466 1.58931 1.70140 1.32829
1.22572 0.98716 0.92694 0.99927 0.88688 1.23016 0.93903 0.84948
0.98184 1.88557 1.46175 1.27926 1.63210 1.21664 0.87933 0.90968
0.91143 1.23176 1.00997 0.95861 0.96311 1.20968 0.95598 0.97569
1.01233 1.20386 1.01045 0.94293 0.99278 1.21540 0.87906 0.99612
0.96606 1.58843 1.12500 1.10274 1.51597 1.21862 0.99001 0.90818
0.92582 1.21750 1.01608 0.98014 0.94757 0.92988 0.90997 0.92625
0.92442 0.92015 0.92795 0.94370 0.95118 0.88830 0.91597 0.89509
0.93943 0.91088 0.90155 0.90545 0.93085 0.91567 0.92437 0.94032
0.90285 0.83121 0.94026 0.92546 0.91713 0.89956
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.87 9.91 71.98 0.71 -3.15 16
2 C -0.12 -3.91 5.93 30.59 0.18 -3.73 16
3 C -0.11 -4.76 5.54 30.59 0.17 -4.59 16
4 C 0.11 5.55 4.97 86.38 0.43 5.98 16
5 N -0.44 -22.69 2.54 -635.54 -1.61 -24.30 16
6 C -0.36 -17.83 8.18 84.04 0.69 -17.14 16
7 H 0.10 4.56 6.81 -2.92 -0.02 4.54 16
8 C 0.01 0.52 4.95 84.93 0.42 0.95 16
9 N -0.89 -46.34 11.37 21.66 0.25 -46.10 16
10 Si 0.98 38.86 29.61 68.60 2.03 40.89 16
11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16
12 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16
13 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16
14 C 0.46 23.22 6.81 87.66 0.60 23.81 16
15 O -0.63 -34.56 15.46 -3.07 -0.05 -34.60 16
16 C -0.12 -4.90 2.54 -10.06 -0.03 -4.92 16
17 H 0.09 4.13 7.14 -2.39 -0.02 4.12 16
18 C 0.08 2.92 7.18 72.65 0.52 3.44 16
19 O -0.34 -11.59 8.04 -148.98 -1.20 -12.79 16
20 C 0.12 3.68 0.79 -10.60 -0.01 3.67 16
21 C -0.13 -4.51 5.31 31.85 0.17 -4.34 16
22 C -0.12 -3.04 4.36 28.98 0.13 -2.92 16
23 C -0.11 -2.63 5.18 28.71 0.15 -2.48 16
24 C 0.07 1.41 6.15 87.08 0.54 1.94 16
25 N -0.70 -15.07 5.60 -513.93 -2.88 -17.95 16
26 C 0.09 1.93 5.95 86.45 0.51 2.45 16
27 C -0.12 -3.10 4.80 30.13 0.14 -2.96 16
28 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16
29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
30 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
32 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16
33 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16
34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
35 H 0.03 1.59 7.49 -2.38 -0.02 1.57 16
36 H 0.09 4.86 5.40 -2.39 -0.01 4.85 16
37 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16
38 H 0.09 3.22 7.69 -2.39 -0.02 3.20 16
39 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16
40 H 0.07 2.78 6.48 -2.39 -0.02 2.77 16
41 H 0.08 2.75 7.78 -2.38 -0.02 2.73 16
42 H 0.08 1.71 7.64 -2.39 -0.02 1.69 16
43 H 0.05 1.48 7.99 -2.38 -0.02 1.46 16
44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
45 H 0.06 1.65 7.29 -2.38 -0.02 1.64 16
46 H 0.04 0.75 6.75 -2.39 -0.02 0.74 16
47 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
48 H 0.35 5.99 8.89 -89.69 -0.80 5.19 16
49 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16
50 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
51 H 0.06 1.72 7.35 -2.39 -0.02 1.70 16
52 H 0.08 1.75 6.68 -2.39 -0.02 1.74 16
Total: -1.00 -61.06 389.74 1.97 -59.09
By element:
Atomic # 1 Polarization: 39.66 SS G_CDS: 0.10 Total: 39.76 kcal
Atomic # 6 Polarization: -9.32 SS G_CDS: 5.33 Total: -4.00 kcal
Atomic # 7 Polarization: -84.11 SS G_CDS: -4.24 Total: -88.35 kcal
Atomic # 8 Polarization: -46.15 SS G_CDS: -1.25 Total: -47.39 kcal
Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal
Total: -61.06 1.97 -59.09 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001160728717.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.521 kcal
(2) G-P(sol) polarization free energy of solvation -61.060 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.581 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.094 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.615 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds