Wall clock time and date at job start Tue Mar 31 2020 15:08:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 120.00296 * 2 1
4 4 H 1.07998 * 120.00389 * 203.27129 * 3 2 1
5 5 C 1.38818 * 119.99730 * 23.26500 * 3 2 1
6 6 N 1.31619 * 120.00273 * 11.64725 * 5 3 2
7 7 Si 1.86800 * 119.99841 * 191.64525 * 5 3 2
8 8 H 1.48502 * 109.47058 * 60.00149 * 7 5 3
9 9 H 1.48505 * 109.47157 * 179.97438 * 7 5 3
10 10 H 1.48499 * 109.47270 * 300.00126 * 7 5 3
11 11 C 1.46695 * 119.99744 * 179.97438 * 2 1 3
12 12 H 1.09051 * 108.93137 * 180.44216 * 11 2 1
13 13 C 1.52873 * 109.21782 * 300.00104 * 11 2 1
14 14 C 1.53214 * 109.85293 * 178.43051 * 13 11 2
15 15 H 1.09109 * 110.62803 * 119.03541 * 14 13 11
16 16 C 1.53369 * 109.01113 * 240.80203 * 14 13 11
17 17 C 1.52859 * 109.83075 * 61.25042 * 16 14 13
18 18 C 1.52867 * 110.49800 * 58.38080 * 17 16 14
19 19 C 1.53384 * 109.76321 * 301.52335 * 18 17 16
20 20 H 1.09100 * 110.54030 * 177.12592 * 19 18 17
21 21 C 1.52873 * 109.21033 * 60.85627 * 11 2 1
22 22 N 1.47512 * 108.28554 * 357.75634 * 14 13 11
23 23 C 1.34794 * 121.92068 * 122.08291 * 22 14 13
24 24 O 1.21511 * 120.00302 * 0.02562 * 23 22 14
25 25 O 1.34648 * 120.00038 * 179.97438 * 23 22 14
26 26 C 1.45198 * 117.00062 * 180.02562 * 25 23 22
27 27 C 1.52999 * 109.47318 * 60.00072 * 26 25 23
28 28 C 1.52997 * 109.46957 * 180.02562 * 26 25 23
29 29 C 1.53003 * 109.47018 * 300.00223 * 26 25 23
30 30 H 1.08999 * 109.47488 * 274.03235 * 1 2 3
31 31 H 1.09000 * 109.46885 * 34.02991 * 1 2 3
32 32 H 1.09004 * 109.47017 * 154.02469 * 1 2 3
33 33 H 0.96999 * 120.00243 * 180.02562 * 6 5 3
34 34 H 1.08975 * 109.68371 * 57.59884 * 13 11 2
35 35 H 1.09282 * 109.24074 * 298.31279 * 13 11 2
36 36 H 1.09083 * 109.47629 * 181.52127 * 16 14 13
37 37 H 1.09128 * 109.39012 * 301.11821 * 16 14 13
38 38 H 1.09372 * 109.00285 * 178.14157 * 17 16 14
39 39 H 1.08866 * 109.80209 * 297.10420 * 17 16 14
40 40 H 1.09069 * 109.51658 * 61.74352 * 18 17 16
41 41 H 1.09114 * 109.46302 * 181.44046 * 18 17 16
42 42 H 1.09276 * 109.22988 * 61.53372 * 21 11 2
43 43 H 1.08980 * 109.66546 * 302.26407 * 21 11 2
44 44 H 1.09005 * 109.46587 * 59.99851 * 27 26 25
45 45 H 1.08996 * 109.47397 * 179.97438 * 27 26 25
46 46 H 1.09000 * 109.47379 * 300.00135 * 27 26 25
47 47 H 1.09001 * 109.47197 * 59.99983 * 28 26 25
48 48 H 1.09007 * 109.46827 * 179.97438 * 28 26 25
49 49 H 1.08993 * 109.47221 * 299.99856 * 28 26 25
50 50 H 1.09000 * 109.47059 * 60.00245 * 29 26 25
51 51 H 1.09005 * 109.46745 * 180.02562 * 29 26 25
52 52 H 1.08991 * 109.47209 * 300.00139 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1498 1.1859 0.0000
4 1 3.1638 1.2239 -0.3695
5 6 1.5403 2.3392 0.4749
6 7 0.4026 2.2597 1.1319
7 14 2.3350 4.0041 0.1815
8 1 2.4628 4.2411 -1.2789
9 1 1.4917 5.0681 0.7832
10 1 3.6819 4.0267 0.8063
11 6 2.1984 -1.2705 0.0006
12 1 3.2686 -1.0611 0.0084
13 6 1.8249 -2.0666 1.2511
14 6 2.5536 -3.4143 1.2468
15 1 3.2069 -3.5008 2.1163
16 6 1.5157 -4.5434 1.2387
17 6 0.6590 -4.4513 -0.0239
18 6 1.5359 -4.5359 -1.2731
19 6 2.5717 -3.4047 -1.2574
20 1 3.2373 -3.4832 -2.1182
21 6 1.8411 -2.0581 -1.2599
22 7 3.3356 -3.5137 0.0000
23 6 4.6702 -3.7023 0.0088
24 8 5.2636 -3.7960 1.0651
25 8 5.3458 -3.7880 -1.1527
26 6 6.7808 -3.9920 -1.0672
27 6 7.0668 -5.3006 -0.3279
28 6 7.3708 -4.0627 -2.4771
29 6 7.4171 -2.8269 -0.3064
30 1 -0.3634 0.0723 1.0251
31 1 -0.3633 0.8517 -0.5751
32 1 -0.3633 -0.9239 -0.4501
33 1 -0.0234 3.0656 1.4633
34 1 0.7475 -2.2285 1.2748
35 1 2.1174 -1.5006 2.1390
36 1 2.0263 -5.5070 1.2629
37 1 0.8764 -4.4542 2.1187
38 1 -0.0536 -5.2809 -0.0321
39 1 0.1040 -3.5147 -0.0255
40 1 2.0487 -5.4983 -1.2939
41 1 0.9112 -4.4428 -2.1629
42 1 2.1426 -1.4850 -2.1401
43 1 0.7643 -2.2218 -1.2972
44 1 6.6134 -6.1306 -0.8699
45 1 8.1440 -5.4540 -0.2641
46 1 6.6465 -5.2498 0.6766
47 1 7.1671 -3.1302 -3.0034
48 1 8.4482 -4.2154 -2.4128
49 1 6.9176 -4.8924 -3.0194
50 1 6.9969 -2.7761 0.6980
51 1 8.4945 -2.9798 -0.2426
52 1 7.2134 -1.8946 -0.8330
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001172103845.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:42
Heat of formation + Delta-G solvation = -57.375196 kcal
Electronic energy + Delta-G solvation = -30823.188746 eV
Core-core repulsion = 27016.420705 eV
Total energy + Delta-G solvation = -3806.768042 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.01500 -39.55506 -36.60453 -35.53549 -34.11872 -32.65818 -32.39275 -31.92130
-29.37904 -27.44856 -27.35320 -25.96407 -25.66730 -25.12791 -22.79321 -22.37549
-21.58235 -19.90275 -19.54859 -18.25259 -17.12172 -16.48329 -16.43259 -15.95377
-15.36909 -15.19552 -14.60048 -14.43490 -14.35197 -13.86584 -13.70577 -13.59598
-13.32669 -13.20723 -12.81528 -12.52375 -12.50498 -12.20938 -12.13326 -11.92276
-11.88821 -11.83033 -11.50086 -11.41094 -11.17547 -11.02533 -10.88839 -10.79622
-10.74187 -10.70609 -10.44126 -10.32900 -10.26486 -10.03795 -9.94936 -9.72049
-9.70448 -9.53880 -8.50834 -8.33546 -6.69639 -5.67828 -3.13571 2.32675
3.10529 3.41628 3.46476 3.47622 3.95573 4.51412 4.71463 4.75113
4.81059 4.90051 4.95915 4.98934 5.17124 5.34165 5.35102 5.40479
5.43608 5.46232 5.51254 5.60030 5.62693 5.63655 5.69287 5.74809
5.85715 5.87171 5.94306 5.94905 5.98793 6.06492 6.11083 6.17208
6.23757 6.24180 6.30332 6.35420 6.37940 6.45332 6.60930 6.70072
6.79383 6.86404 7.04572 7.07888 7.42679 7.72164 7.77016 7.84965
8.45578 8.59981 9.29387 9.92455 10.41881 11.37001
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.012185 B = 0.004642 C = 0.003754
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2297.262025 B = 6030.057557 C = 7456.128631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.165 3.835
2 N -0.597 5.597
3 C -0.251 4.251
4 H 0.065 0.935
5 C 0.003 3.997
6 N -0.909 5.909
7 Si 0.903 3.097
8 H -0.285 1.285
9 H -0.291 1.291
10 H -0.284 1.284
11 C 0.193 3.807
12 H 0.058 0.942
13 C -0.142 4.142
14 C 0.160 3.840
15 H 0.099 0.901
16 C -0.125 4.125
17 C -0.121 4.121
18 C -0.125 4.125
19 C 0.144 3.856
20 H 0.095 0.905
21 C -0.144 4.144
22 N -0.581 5.581
23 C 0.657 3.343
24 O -0.577 6.577
25 O -0.363 6.363
26 C 0.136 3.864
27 C -0.181 4.181
28 C -0.140 4.140
29 C -0.184 4.184
30 H 0.027 0.973
31 H 0.041 0.959
32 H -0.003 1.003
33 H 0.252 0.748
34 H 0.069 0.931
35 H 0.068 0.932
36 H 0.059 0.941
37 H 0.075 0.925
38 H 0.058 0.942
39 H 0.076 0.924
40 H 0.059 0.941
41 H 0.072 0.928
42 H 0.065 0.935
43 H 0.070 0.930
44 H 0.056 0.944
45 H 0.066 0.934
46 H 0.088 0.912
47 H 0.067 0.933
48 H 0.077 0.923
49 H 0.064 0.936
50 H 0.089 0.911
51 H 0.066 0.934
52 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.644 -17.031 -5.465 19.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.319 5.319
3 C -0.381 4.381
4 H 0.082 0.918
5 C -0.195 4.195
6 N -0.554 5.554
7 Si 0.733 3.267
8 H -0.212 1.212
9 H -0.217 1.217
10 H -0.210 1.210
11 C 0.084 3.916
12 H 0.076 0.924
13 C -0.182 4.182
14 C 0.058 3.942
15 H 0.117 0.883
16 C -0.163 4.163
17 C -0.158 4.158
18 C -0.163 4.163
19 C 0.040 3.960
20 H 0.113 0.887
21 C -0.184 4.184
22 N -0.320 5.320
23 C 0.413 3.587
24 O -0.467 6.467
25 O -0.278 6.278
26 C 0.099 3.901
27 C -0.238 4.238
28 C -0.197 4.197
29 C -0.241 4.241
30 H 0.045 0.955
31 H 0.059 0.941
32 H 0.015 0.985
33 H 0.062 0.938
34 H 0.088 0.912
35 H 0.086 0.914
36 H 0.078 0.922
37 H 0.093 0.907
38 H 0.077 0.923
39 H 0.094 0.906
40 H 0.078 0.922
41 H 0.091 0.909
42 H 0.083 0.917
43 H 0.089 0.911
44 H 0.075 0.925
45 H 0.085 0.915
46 H 0.107 0.893
47 H 0.086 0.914
48 H 0.096 0.904
49 H 0.083 0.917
50 H 0.108 0.892
51 H 0.085 0.915
52 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 6.801 -16.891 -5.104 18.910
hybrid contribution 0.387 0.996 -0.070 1.071
sum 7.187 -15.895 -5.174 18.195
Atomic orbital electron populations
1.20731 0.82869 0.95321 0.99054 1.44019 1.01705 1.00208 1.85934
1.19159 0.98314 0.85620 1.35009 0.91756 1.24999 0.97837 0.98396
0.98308 1.70047 1.18714 1.27186 1.39446 0.86364 0.78541 0.83984
0.77823 1.21156 1.21655 1.21020 1.19963 0.95863 0.85584 0.90175
0.92360 1.22607 1.00170 0.93717 1.01720 1.21605 0.91603 0.95645
0.85398 0.88251 1.21969 0.97569 0.98263 0.98530 1.21490 0.97706
1.02644 0.94002 1.21959 0.97567 0.98203 0.98560 1.21644 0.92887
0.95639 0.85817 0.88652 1.22563 1.00472 0.94081 1.01293 1.47370
1.02697 1.73166 1.08779 1.17875 0.82477 0.76204 0.82182 1.90852
1.67505 1.56987 1.31379 1.86294 1.22934 1.85681 1.32889 1.21984
0.75519 0.95887 0.96692 1.22501 1.02318 0.95871 1.03157 1.21843
1.00449 1.03285 0.94119 1.22514 1.00903 0.97428 1.03251 0.95480
0.94062 0.98477 0.93810 0.91240 0.91362 0.92182 0.90685 0.92324
0.90592 0.92187 0.90897 0.91656 0.91109 0.92476 0.91483 0.89338
0.91403 0.90425 0.91690 0.89242 0.91531 0.92011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.97 7.94 59.85 0.48 4.44 16
2 N -0.60 -14.78 2.80 -173.46 -0.48 -15.26 16
3 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16
4 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16
5 C 0.00 0.07 5.12 -17.43 -0.09 -0.01 16
6 N -0.91 -26.51 10.66 55.49 0.59 -25.92 16
7 Si 0.90 22.17 29.57 -169.99 -5.03 17.15 16
8 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
11 C 0.19 3.93 2.32 -67.95 -0.16 3.78 16
12 H 0.06 1.33 7.59 -51.90 -0.39 0.93 16
13 C -0.14 -2.58 4.75 -26.69 -0.13 -2.71 16
14 C 0.16 2.47 3.48 -67.08 -0.23 2.24 16
15 H 0.10 1.63 7.19 -51.87 -0.37 1.26 16
16 C -0.13 -1.56 5.38 -26.61 -0.14 -1.71 16
17 C -0.12 -1.43 5.37 -26.87 -0.14 -1.57 16
18 C -0.12 -1.45 5.39 -26.60 -0.14 -1.59 16
19 C 0.14 2.03 3.50 -67.07 -0.23 1.80 16
20 H 0.10 1.31 7.12 -51.87 -0.37 0.94 16
21 C -0.14 -2.41 4.75 -26.69 -0.13 -2.54 16
22 N -0.58 -9.07 1.80 -161.99 -0.29 -9.36 16
23 C 0.66 10.95 7.79 54.06 0.42 11.37 16
24 O -0.58 -10.55 11.45 -19.28 -0.22 -10.77 16
25 O -0.36 -5.44 8.68 -40.35 -0.35 -5.79 16
26 C 0.14 1.69 1.13 -90.62 -0.10 1.59 16
27 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16
28 C -0.14 -1.32 8.85 37.16 0.33 -0.99 16
29 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16
30 H 0.03 0.71 7.40 -51.93 -0.38 0.32 16
31 H 0.04 1.08 7.25 -51.93 -0.38 0.70 16
32 H 0.00 -0.07 6.43 -51.93 -0.33 -0.40 16
33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
34 H 0.07 1.23 5.82 -51.94 -0.30 0.93 16
35 H 0.07 1.40 8.17 -51.77 -0.42 0.98 16
36 H 0.06 0.73 8.15 -51.88 -0.42 0.30 16
37 H 0.07 0.86 8.15 -51.86 -0.42 0.44 16
38 H 0.06 0.59 8.17 -51.72 -0.42 0.17 16
39 H 0.08 1.00 5.19 -52.00 -0.27 0.73 16
40 H 0.06 0.67 8.15 -51.89 -0.42 0.25 16
41 H 0.07 0.75 8.15 -51.86 -0.42 0.33 16
42 H 0.06 1.15 8.17 -51.77 -0.42 0.73 16
43 H 0.07 1.15 4.81 -51.94 -0.25 0.90 16
44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
46 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16
47 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
50 H 0.09 1.40 5.88 -51.93 -0.31 1.09 16
51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
52 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 379.14 15.07 5.71 5.71
Total: -1.00 -30.58 379.14 -8.99 -39.58
By element:
Atomic # 1 Polarization: 10.65 SS G_CDS: -9.13 Total: 1.53 kcal
Atomic # 6 Polarization: 2.94 SS G_CDS: 0.20 Total: 3.14 kcal
Atomic # 7 Polarization: -50.36 SS G_CDS: -0.19 Total: -50.55 kcal
Atomic # 8 Polarization: -15.99 SS G_CDS: -0.57 Total: -16.56 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.15 kcal
Total LS contribution 5.71 Total: 5.71 kcal
Total: -30.58 -8.99 -39.58 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172103845.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.799 kcal
(2) G-P(sol) polarization free energy of solvation -30.583 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.382 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.375 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds