Wall clock time and date at job start Tue Mar 31 2020 15:08:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46502 * 1
3 3 C 1.36935 * 120.00296 * 2 1
4 4 H 1.07998 * 120.00389 * 203.27129 * 3 2 1
5 5 C 1.38818 * 119.99730 * 23.26500 * 3 2 1
6 6 N 1.31619 * 120.00273 * 11.64725 * 5 3 2
7 7 Si 1.86800 * 119.99841 * 191.64525 * 5 3 2
8 8 H 1.48502 * 109.47058 * 60.00149 * 7 5 3
9 9 H 1.48505 * 109.47157 * 179.97438 * 7 5 3
10 10 H 1.48499 * 109.47270 * 300.00126 * 7 5 3
11 11 C 1.46695 * 119.99744 * 179.97438 * 2 1 3
12 12 H 1.09051 * 108.93137 * 180.44216 * 11 2 1
13 13 C 1.52873 * 109.21782 * 300.00104 * 11 2 1
14 14 C 1.53214 * 109.85293 * 178.43051 * 13 11 2
15 15 H 1.09109 * 110.62803 * 119.03541 * 14 13 11
16 16 C 1.53369 * 109.01113 * 240.80203 * 14 13 11
17 17 C 1.52859 * 109.83075 * 61.25042 * 16 14 13
18 18 C 1.52867 * 110.49800 * 58.38080 * 17 16 14
19 19 C 1.53384 * 109.76321 * 301.52335 * 18 17 16
20 20 H 1.09100 * 110.54030 * 177.12592 * 19 18 17
21 21 C 1.52873 * 109.21033 * 60.85627 * 11 2 1
22 22 N 1.47512 * 108.28554 * 357.75634 * 14 13 11
23 23 C 1.34794 * 121.92068 * 122.08291 * 22 14 13
24 24 O 1.21511 * 120.00302 * 0.02562 * 23 22 14
25 25 O 1.34648 * 120.00038 * 179.97438 * 23 22 14
26 26 C 1.45198 * 117.00062 * 180.02562 * 25 23 22
27 27 C 1.52999 * 109.47318 * 60.00072 * 26 25 23
28 28 C 1.52997 * 109.46957 * 180.02562 * 26 25 23
29 29 C 1.53003 * 109.47018 * 300.00223 * 26 25 23
30 30 H 1.08999 * 109.47488 * 274.03235 * 1 2 3
31 31 H 1.09000 * 109.46885 * 34.02991 * 1 2 3
32 32 H 1.09004 * 109.47017 * 154.02469 * 1 2 3
33 33 H 0.96999 * 120.00243 * 180.02562 * 6 5 3
34 34 H 1.08975 * 109.68371 * 57.59884 * 13 11 2
35 35 H 1.09282 * 109.24074 * 298.31279 * 13 11 2
36 36 H 1.09083 * 109.47629 * 181.52127 * 16 14 13
37 37 H 1.09128 * 109.39012 * 301.11821 * 16 14 13
38 38 H 1.09372 * 109.00285 * 178.14157 * 17 16 14
39 39 H 1.08866 * 109.80209 * 297.10420 * 17 16 14
40 40 H 1.09069 * 109.51658 * 61.74352 * 18 17 16
41 41 H 1.09114 * 109.46302 * 181.44046 * 18 17 16
42 42 H 1.09276 * 109.22988 * 61.53372 * 21 11 2
43 43 H 1.08980 * 109.66546 * 302.26407 * 21 11 2
44 44 H 1.09005 * 109.46587 * 59.99851 * 27 26 25
45 45 H 1.08996 * 109.47397 * 179.97438 * 27 26 25
46 46 H 1.09000 * 109.47379 * 300.00135 * 27 26 25
47 47 H 1.09001 * 109.47197 * 59.99983 * 28 26 25
48 48 H 1.09007 * 109.46827 * 179.97438 * 28 26 25
49 49 H 1.08993 * 109.47221 * 299.99856 * 28 26 25
50 50 H 1.09000 * 109.47059 * 60.00245 * 29 26 25
51 51 H 1.09005 * 109.46745 * 180.02562 * 29 26 25
52 52 H 1.08991 * 109.47209 * 300.00139 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1498 1.1859 0.0000
4 1 3.1638 1.2239 -0.3695
5 6 1.5403 2.3392 0.4749
6 7 0.4026 2.2597 1.1319
7 14 2.3350 4.0041 0.1815
8 1 2.4628 4.2411 -1.2789
9 1 1.4917 5.0681 0.7832
10 1 3.6819 4.0267 0.8063
11 6 2.1984 -1.2705 0.0006
12 1 3.2686 -1.0611 0.0084
13 6 1.8249 -2.0666 1.2511
14 6 2.5536 -3.4143 1.2468
15 1 3.2069 -3.5008 2.1163
16 6 1.5157 -4.5434 1.2387
17 6 0.6590 -4.4513 -0.0239
18 6 1.5359 -4.5359 -1.2731
19 6 2.5717 -3.4047 -1.2574
20 1 3.2373 -3.4832 -2.1182
21 6 1.8411 -2.0581 -1.2599
22 7 3.3356 -3.5137 0.0000
23 6 4.6702 -3.7023 0.0088
24 8 5.2636 -3.7960 1.0651
25 8 5.3458 -3.7880 -1.1527
26 6 6.7808 -3.9920 -1.0672
27 6 7.0668 -5.3006 -0.3279
28 6 7.3708 -4.0627 -2.4771
29 6 7.4171 -2.8269 -0.3064
30 1 -0.3634 0.0723 1.0251
31 1 -0.3633 0.8517 -0.5751
32 1 -0.3633 -0.9239 -0.4501
33 1 -0.0234 3.0656 1.4633
34 1 0.7475 -2.2285 1.2748
35 1 2.1174 -1.5006 2.1390
36 1 2.0263 -5.5070 1.2629
37 1 0.8764 -4.4542 2.1187
38 1 -0.0536 -5.2809 -0.0321
39 1 0.1040 -3.5147 -0.0255
40 1 2.0487 -5.4983 -1.2939
41 1 0.9112 -4.4428 -2.1629
42 1 2.1426 -1.4850 -2.1401
43 1 0.7643 -2.2218 -1.2972
44 1 6.6134 -6.1306 -0.8699
45 1 8.1440 -5.4540 -0.2641
46 1 6.6465 -5.2498 0.6766
47 1 7.1671 -3.1302 -3.0034
48 1 8.4482 -4.2154 -2.4128
49 1 6.9176 -4.8924 -3.0194
50 1 6.9969 -2.7761 0.6980
51 1 8.4945 -2.9798 -0.2426
52 1 7.2134 -1.8946 -0.8330
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001172103845.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:41
Heat of formation + Delta-G solvation = -73.137655 kcal
Electronic energy + Delta-G solvation = -30823.872258 eV
Core-core repulsion = 27016.420705 eV
Total energy + Delta-G solvation = -3807.451553 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-42.25914 -40.76709 -37.90777 -37.25261 -35.20235 -34.08512 -33.61111 -33.48681
-31.18212 -28.34645 -28.26511 -28.01669 -26.88838 -26.54480 -24.45379 -23.61255
-22.78445 -21.17925 -20.92619 -19.48029 -18.92740 -18.03439 -17.59811 -17.32288
-16.87620 -16.47059 -16.01355 -15.80363 -15.49519 -15.30383 -15.06051 -14.81976
-14.61700 -14.41299 -14.23309 -13.96471 -13.73111 -13.59500 -13.32289 -13.08842
-12.90219 -12.87234 -12.83511 -12.81708 -12.71477 -12.47607 -12.37326 -12.23524
-12.15471 -12.11495 -11.93791 -11.86619 -11.84351 -11.37088 -11.34068 -11.27560
-11.12491 -10.91130 -10.62607 -9.59899 -8.75600 -7.83040 -5.30800 1.15852
1.42996 1.44483 1.51373 1.82493 2.48269 2.83024 3.29103 3.50865
3.77282 3.78409 3.83403 3.86617 3.97811 4.00269 4.04109 4.13697
4.25571 4.34283 4.38064 4.49263 4.52460 4.62378 4.62980 4.66098
4.78011 4.79205 4.84812 4.85997 4.89995 4.92784 4.98142 5.01671
5.03444 5.10637 5.15653 5.20000 5.24491 5.28981 5.30613 5.36924
5.42732 5.52482 5.55016 5.58073 5.61111 5.63544 5.76084 6.32779
6.47331 7.16565 7.34011 7.89458 8.31797 9.19086
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.012185 B = 0.004642 C = 0.003754
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2297.262025 B = 6030.057557 C = 7456.128631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.183 3.817
2 N -0.613 5.613
3 C -0.264 4.264
4 H 0.056 0.944
5 C -0.048 4.048
6 N -0.934 5.934
7 Si 0.963 3.037
8 H -0.277 1.277
9 H -0.290 1.290
10 H -0.282 1.282
11 C 0.193 3.807
12 H 0.025 0.975
13 C -0.129 4.129
14 C 0.163 3.837
15 H 0.084 0.916
16 C -0.117 4.117
17 C -0.120 4.120
18 C -0.117 4.117
19 C 0.147 3.853
20 H 0.103 0.897
21 C -0.131 4.131
22 N -0.583 5.583
23 C 0.651 3.349
24 O -0.600 6.600
25 O -0.367 6.367
26 C 0.123 3.877
27 C -0.175 4.175
28 C -0.133 4.133
29 C -0.181 4.181
30 H 0.001 0.999
31 H 0.013 0.987
32 H 0.036 0.964
33 H 0.248 0.752
34 H 0.078 0.922
35 H 0.032 0.968
36 H 0.071 0.929
37 H 0.086 0.914
38 H 0.086 0.914
39 H 0.062 0.938
40 H 0.072 0.928
41 H 0.094 0.906
42 H 0.054 0.946
43 H 0.082 0.918
44 H 0.066 0.934
45 H 0.091 0.909
46 H 0.059 0.941
47 H 0.062 0.938
48 H 0.103 0.897
49 H 0.075 0.925
50 H 0.056 0.944
51 H 0.093 0.907
52 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.958 -19.309 -7.259 21.770
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.038 3.962
2 N -0.335 5.335
3 C -0.394 4.394
4 H 0.074 0.926
5 C -0.243 4.243
6 N -0.581 5.581
7 Si 0.792 3.208
8 H -0.203 1.203
9 H -0.216 1.216
10 H -0.208 1.208
11 C 0.086 3.914
12 H 0.043 0.957
13 C -0.169 4.169
14 C 0.061 3.939
15 H 0.102 0.898
16 C -0.155 4.155
17 C -0.158 4.158
18 C -0.155 4.155
19 C 0.043 3.957
20 H 0.121 0.879
21 C -0.171 4.171
22 N -0.323 5.323
23 C 0.407 3.593
24 O -0.492 6.492
25 O -0.281 6.281
26 C 0.087 3.913
27 C -0.232 4.232
28 C -0.190 4.190
29 C -0.238 4.238
30 H 0.019 0.981
31 H 0.032 0.968
32 H 0.054 0.946
33 H 0.057 0.943
34 H 0.097 0.903
35 H 0.051 0.949
36 H 0.089 0.911
37 H 0.104 0.896
38 H 0.105 0.895
39 H 0.080 0.920
40 H 0.091 0.909
41 H 0.113 0.887
42 H 0.073 0.927
43 H 0.101 0.899
44 H 0.085 0.915
45 H 0.110 0.890
46 H 0.078 0.922
47 H 0.081 0.919
48 H 0.122 0.878
49 H 0.094 0.906
50 H 0.075 0.925
51 H 0.112 0.888
52 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges 7.131 -19.203 -6.924 21.622
hybrid contribution 0.393 1.704 0.505 1.820
sum 7.523 -17.499 -6.419 20.100
Atomic orbital electron populations
1.20451 0.82481 0.95959 0.97276 1.44239 1.02156 1.00946 1.86180
1.19393 0.98238 0.87225 1.34550 0.92576 1.25697 0.98571 1.01503
0.98518 1.70202 1.19856 1.27591 1.40459 0.85407 0.77560 0.79974
0.77890 1.20347 1.21594 1.20812 1.20053 0.93537 0.84814 0.93036
0.95683 1.22416 1.00922 0.94692 0.98899 1.21498 0.92000 0.95228
0.85201 0.89816 1.21930 0.96797 0.96965 0.99829 1.21501 0.97842
1.03067 0.93349 1.21941 0.96889 0.97251 0.99437 1.21735 0.93425
0.95108 0.85389 0.87905 1.22389 1.01459 0.94929 0.98300 1.47464
1.02650 1.72879 1.09265 1.18074 0.82762 0.76101 0.82389 1.90845
1.68050 1.57947 1.32344 1.86301 1.24439 1.85444 1.31934 1.22402
0.74187 0.95921 0.98777 1.22429 1.03827 0.95569 1.01351 1.21866
1.01854 1.03502 0.91810 1.22478 1.02579 0.97525 1.01253 0.98101
0.96840 0.94605 0.94262 0.90317 0.94877 0.91078 0.89556 0.89508
0.91980 0.90891 0.88727 0.92716 0.89934 0.91509 0.89046 0.92220
0.91870 0.87835 0.90646 0.92517 0.88783 0.93078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.94 7.94 127.77 1.02 9.95 16
2 N -0.61 -31.18 2.80 -702.71 -1.96 -33.15 16
3 C -0.26 -15.09 9.58 84.04 0.81 -14.29 16
4 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16
5 C -0.05 -2.74 5.12 84.86 0.43 -2.30 16
6 N -0.93 -56.05 10.66 21.65 0.23 -55.82 16
7 Si 0.96 46.51 29.57 68.60 2.03 48.54 16
8 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
9 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16
10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16
11 C 0.19 8.06 2.32 44.87 0.10 8.17 16
12 H 0.02 1.19 7.59 -2.36 -0.02 1.18 16
13 C -0.13 -4.82 4.75 30.62 0.15 -4.67 16
14 C 0.16 5.05 3.48 44.99 0.16 5.20 16
15 H 0.08 2.85 7.19 -2.33 -0.02 2.84 16
16 C -0.12 -2.66 5.38 30.67 0.16 -2.49 16
17 C -0.12 -2.41 5.37 30.50 0.16 -2.24 16
18 C -0.12 -2.29 5.39 30.68 0.17 -2.12 16
19 C 0.15 3.88 3.50 44.99 0.16 4.04 16
20 H 0.10 2.61 7.12 -2.33 -0.02 2.59 16
21 C -0.13 -4.27 4.75 30.62 0.15 -4.12 16
22 N -0.58 -17.99 1.80 -896.80 -1.62 -19.60 16
23 C 0.65 21.85 7.79 129.79 1.01 22.86 16
24 O -0.60 -22.68 11.45 19.80 0.23 -22.45 16
25 O -0.37 -10.76 8.68 -55.57 -0.48 -11.25 16
26 C 0.12 2.91 1.13 -10.79 -0.01 2.90 16
27 C -0.17 -3.74 8.37 71.98 0.60 -3.13 16
28 C -0.13 -2.16 8.85 71.98 0.64 -1.53 16
29 C -0.18 -4.68 8.37 71.98 0.60 -4.07 16
30 H 0.00 0.04 7.40 -2.39 -0.02 0.02 16
31 H 0.01 0.70 7.25 -2.39 -0.02 0.68 16
32 H 0.04 1.44 6.43 -2.38 -0.02 1.42 16
33 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16
34 H 0.08 2.78 5.82 -2.40 -0.01 2.76 16
35 H 0.03 1.43 8.17 -2.24 -0.02 1.41 16
36 H 0.07 1.51 8.15 -2.34 -0.02 1.49 16
37 H 0.09 1.79 8.15 -2.32 -0.02 1.77 16
38 H 0.09 1.34 8.17 -2.19 -0.02 1.32 16
39 H 0.06 1.44 5.19 -2.46 -0.01 1.43 16
40 H 0.07 1.31 8.15 -2.35 -0.02 1.29 16
41 H 0.09 1.51 8.15 -2.33 -0.02 1.49 16
42 H 0.05 1.89 8.17 -2.24 -0.02 1.88 16
43 H 0.08 2.51 4.81 -2.40 -0.01 2.50 16
44 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
45 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16
46 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16
47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
48 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16
49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
50 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16
51 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16
52 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -69.70 379.14 5.61 -64.09
By element:
Atomic # 1 Polarization: 16.61 SS G_CDS: 0.89 Total: 17.51 kcal
Atomic # 6 Polarization: 5.84 SS G_CDS: 6.30 Total: 12.14 kcal
Atomic # 7 Polarization: -105.22 SS G_CDS: -3.35 Total: -108.57 kcal
Atomic # 8 Polarization: -33.45 SS G_CDS: -0.26 Total: -33.70 kcal
Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal
Total: -69.70 5.61 -64.09 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001172103845.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.051 kcal
(2) G-P(sol) polarization free energy of solvation -69.700 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds