Wall clock time and date at job start Tue Mar 31 2020 14:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50696 * 119.99844 * 2 1 4 4 C 1.53005 * 109.47250 * 240.00569 * 3 2 1 5 5 C 1.52994 * 109.47164 * 120.00185 * 3 2 1 6 6 C 1.52995 * 109.47223 * 60.00142 * 5 3 2 7 7 O 1.42895 * 109.47606 * 180.02562 * 6 5 3 8 8 C 1.42898 * 114.00290 * 179.97438 * 7 6 5 9 9 C 1.50708 * 109.47093 * 0.02562 * 3 2 1 10 10 O 1.21275 * 119.99960 * 114.88853 * 9 3 2 11 11 N 1.34775 * 119.99688 * 294.88605 * 9 3 2 12 12 C 1.46924 * 120.63366 * 5.48343 * 11 9 3 13 13 C 1.53626 * 108.54172 * 126.36690 * 12 11 9 14 14 C 1.53038 * 109.24549 * 54.85592 * 13 12 11 15 15 C 1.52999 * 109.46298 * 178.48863 * 14 13 12 16 16 N 1.46493 * 109.47248 * 295.07027 * 15 14 13 17 17 C 1.36940 * 120.00121 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99894 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00128 * 179.97438 * 17 16 15 20 20 N 1.31627 * 120.00126 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00103 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47130 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47373 * 120.00155 * 21 19 17 24 24 H 1.48498 * 109.47329 * 239.99804 * 21 19 17 25 25 C 1.53042 * 109.53857 * 298.51289 * 14 13 12 26 26 C 1.46928 * 120.62750 * 185.76182 * 11 9 3 27 27 H 1.08001 * 120.00129 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99625 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99655 * 180.28217 * 2 1 3 30 30 H 1.08998 * 109.47493 * 65.13257 * 4 3 2 31 31 H 1.09004 * 109.47228 * 185.13475 * 4 3 2 32 32 H 1.09002 * 109.46699 * 305.13602 * 4 3 2 33 33 H 1.09002 * 109.47404 * 180.02562 * 5 3 2 34 34 H 1.09002 * 109.47069 * 299.99924 * 5 3 2 35 35 H 1.09002 * 109.47075 * 300.00379 * 6 5 3 36 36 H 1.09002 * 109.47276 * 59.99908 * 6 5 3 37 37 H 1.09011 * 109.47129 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47249 * 299.99587 * 8 7 6 39 39 H 1.09002 * 109.47373 * 60.00011 * 8 7 6 40 40 H 1.08998 * 109.59011 * 246.19554 * 12 11 9 41 41 H 1.08999 * 109.58399 * 6.62633 * 12 11 9 42 42 H 1.09002 * 109.63300 * 294.86006 * 13 12 11 43 43 H 1.09001 * 109.45597 * 174.74250 * 13 12 11 44 44 H 1.09003 * 109.44901 * 58.52380 * 14 13 12 45 45 H 1.09009 * 109.46926 * 55.06871 * 15 14 13 46 46 H 1.08996 * 109.47250 * 175.06755 * 15 14 13 47 47 H 0.96998 * 120.00297 * 0.02562 * 16 15 14 48 48 H 0.96993 * 120.00178 * 180.02562 * 20 19 17 49 49 H 1.09000 * 109.49341 * 301.41120 * 25 14 13 50 50 H 1.08990 * 109.52566 * 181.33381 * 25 14 13 51 51 H 1.08996 * 109.58784 * 353.37112 * 26 11 9 52 52 H 1.09000 * 109.59038 * 113.65982 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 6 2.9431 1.3861 1.2492 6 6 3.9374 0.2233 1.2491 7 8 4.7586 0.2986 2.4161 8 6 5.7268 -0.7478 2.5141 9 6 1.0841 2.4505 0.0006 10 8 1.0264 3.1985 0.9536 11 7 0.2725 2.6437 -1.0579 12 6 0.2452 1.6795 -2.1661 13 6 -1.2087 1.2392 -2.3948 14 6 -2.0815 2.4765 -2.6170 15 6 -3.5242 2.0416 -2.8828 16 7 -3.5846 1.2920 -4.1399 17 6 -4.7815 0.7982 -4.5858 18 1 -5.6810 0.9619 -4.0109 19 6 -4.8388 0.0884 -5.7773 20 7 -3.7426 -0.1106 -6.4783 21 14 -6.4716 -0.5845 -6.3860 22 1 -7.5442 -0.2267 -5.4233 23 1 -6.7840 0.0009 -7.7145 24 1 -6.3848 -2.0622 -6.5045 25 6 -2.0378 3.3642 -1.3711 26 6 -0.5974 3.8257 -1.1282 27 1 -0.5400 0.9353 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8500 -0.9353 -0.0046 30 1 2.3113 1.4204 -2.1369 31 1 3.5557 2.2867 -1.2045 32 1 3.5888 0.5094 -1.2966 33 1 3.4878 2.3303 1.2494 34 1 2.3165 1.3284 2.1392 35 1 3.3924 -0.7207 1.2491 36 1 4.5641 0.2811 0.3591 37 1 6.3098 -0.6192 3.4262 38 1 5.2187 -1.7117 2.5401 39 1 6.3910 -0.7104 1.6505 40 1 0.6337 2.1499 -3.0694 41 1 0.8552 0.8129 -1.9115 42 1 -1.5674 0.6928 -1.5225 43 1 -1.2593 0.5957 -3.2732 44 1 -1.7070 3.0356 -3.4745 45 1 -3.8692 1.4085 -2.0652 46 1 -4.1619 2.9226 -2.9541 47 1 -2.7767 1.1447 -4.6561 48 1 -3.7827 -0.6063 -7.3110 49 1 -2.3887 2.7978 -0.5085 50 1 -2.6781 4.2334 -1.5205 51 1 -0.5435 4.3755 -0.1886 52 1 -0.2746 4.4688 -1.9470 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205774339.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:04 Heat of formation + Delta-G solvation = -40.607812 kcal Electronic energy + Delta-G solvation = -29123.017037 eV Core-core repulsion = 25316.976083 eV Total energy + Delta-G solvation = -3806.040953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26277 -38.47236 -37.72615 -36.46505 -34.95695 -32.88358 -32.08905 -30.91837 -30.31208 -29.27047 -26.89391 -26.65077 -25.07985 -23.75577 -23.22161 -22.18870 -22.07967 -20.79582 -19.50052 -18.57931 -17.20720 -16.90858 -16.68535 -16.35185 -16.03991 -15.48814 -15.09152 -14.87921 -14.52121 -14.26953 -14.19290 -14.00725 -13.75400 -13.68476 -13.39506 -13.16608 -12.77249 -12.57384 -12.45654 -12.33333 -12.13840 -12.09129 -11.91925 -11.71316 -11.46322 -11.17526 -11.09632 -10.99333 -10.86855 -10.86217 -10.41080 -10.33772 -10.23962 -9.98318 -9.90293 -9.67175 -9.63154 -9.33604 -8.89081 -8.59415 -6.92730 -5.78850 -3.06662 2.04248 2.53923 2.87117 3.41487 3.47672 3.49517 3.50479 4.18842 4.46433 4.57359 4.68226 4.78946 4.87079 4.90385 4.92847 5.01541 5.04190 5.05686 5.12739 5.14703 5.18178 5.21371 5.33576 5.36055 5.45442 5.49622 5.52780 5.54545 5.63706 5.73505 5.78782 5.81672 5.90012 5.96487 5.98709 6.04920 6.10157 6.18487 6.27908 6.38030 6.42614 6.46797 6.50107 6.64126 6.80423 6.86494 6.91311 7.36415 7.69355 8.09846 8.40715 9.51979 10.10223 10.44904 11.44212 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.002601 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.340924 B =10761.935409 C =11550.192252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.166 4.166 3 C -0.044 4.044 4 C -0.160 4.160 5 C -0.088 4.088 6 C 0.060 3.940 7 O -0.392 6.392 8 C 0.032 3.968 9 C 0.529 3.471 10 O -0.542 6.542 11 N -0.605 5.605 12 C 0.087 3.913 13 C -0.130 4.130 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.731 5.731 17 C -0.236 4.236 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.125 4.125 26 C 0.111 3.889 27 H 0.113 0.887 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.068 0.932 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.065 0.935 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.684 1.227 13.873 22.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.184 4.184 3 C -0.047 4.047 4 C -0.217 4.217 5 C -0.126 4.126 6 C -0.016 4.016 7 O -0.311 6.311 8 C -0.065 4.065 9 C 0.317 3.683 10 O -0.419 6.419 11 N -0.338 5.338 12 C -0.035 4.035 13 C -0.168 4.168 14 C -0.112 4.112 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.211 4.211 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.164 4.164 26 C -0.011 4.011 27 H 0.131 0.869 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.120 0.880 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.107 0.893 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.444 1.751 14.504 22.753 hybrid contribution -0.669 -0.814 -0.962 1.426 sum 16.775 0.937 13.542 21.580 Atomic orbital electron populations 1.24506 0.96160 1.03611 0.96963 1.22622 0.95811 0.96517 1.03497 1.19805 0.94946 0.92403 0.97540 1.22286 0.99871 1.02989 0.96522 1.21230 0.96146 0.98440 0.96803 1.22673 0.92530 0.98764 0.87683 1.87876 1.49360 1.49986 1.43881 1.22737 0.91532 0.90330 1.01896 1.20276 0.80707 0.85441 0.81888 1.90680 1.69598 1.47744 1.33884 1.48172 1.40663 1.24550 1.20449 1.22523 0.99111 0.92916 0.88925 1.22160 0.92789 0.98326 1.03509 1.21306 0.97215 0.95730 0.96997 1.20668 0.92305 0.94326 0.89655 1.42375 1.08454 1.64503 1.22249 1.19281 0.87363 1.26865 1.03261 0.91229 1.24724 0.97079 1.01501 0.97795 1.69660 1.26093 1.46262 1.16316 0.86131 0.83239 0.78456 0.78465 1.20598 1.21911 1.21896 1.21906 0.95476 1.00301 0.98734 1.21641 0.89682 0.86990 1.02804 0.86931 0.87419 0.86093 0.90126 0.91698 0.91131 0.90369 0.90163 0.92944 0.92938 0.89675 0.94073 0.94111 0.91333 0.87958 0.90978 0.89453 0.91060 0.96452 0.96418 0.78289 0.93615 0.91639 0.90674 0.89275 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 10.25 29.01 0.30 -1.59 16 2 C -0.17 -1.59 6.74 -36.03 -0.24 -1.83 16 3 C -0.04 -0.45 0.51 -156.81 -0.08 -0.53 16 4 C -0.16 -1.33 7.60 37.16 0.28 -1.05 16 5 C -0.09 -0.94 3.93 -26.74 -0.11 -1.05 16 6 C 0.06 0.53 5.33 37.15 0.20 0.73 16 7 O -0.39 -4.06 10.70 -35.23 -0.38 -4.44 16 8 C 0.03 0.22 11.01 101.05 1.11 1.33 16 9 C 0.53 6.90 5.16 -10.98 -0.06 6.84 16 10 O -0.54 -8.83 15.40 5.56 0.09 -8.74 16 11 N -0.61 -7.31 2.15 -172.50 -0.37 -7.68 16 12 C 0.09 0.99 3.57 -3.49 -0.01 0.98 16 13 C -0.13 -1.81 4.77 -26.39 -0.13 -1.93 16 14 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 15 C 0.16 3.07 5.65 -4.05 -0.02 3.04 16 16 N -0.73 -17.88 5.32 -59.91 -0.32 -18.20 16 17 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 19 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 21 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.13 -1.60 5.36 -26.61 -0.14 -1.74 16 26 C 0.11 1.34 6.44 -3.71 -0.02 1.32 16 27 H 0.11 1.41 4.18 -52.49 -0.22 1.19 16 28 H 0.11 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.12 0.93 7.01 -52.49 -0.37 0.56 16 30 H 0.08 0.68 4.56 -51.93 -0.24 0.44 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.05 0.41 6.62 -51.93 -0.34 0.07 16 36 H 0.05 0.39 6.55 -51.93 -0.34 0.05 16 37 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 41 H 0.10 1.04 3.12 -51.93 -0.16 0.88 16 42 H 0.07 1.01 5.61 -51.93 -0.29 0.72 16 43 H 0.09 1.41 7.15 -51.93 -0.37 1.04 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.38 9.71 6.84 -40.82 -0.28 9.43 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 52 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -32.20 386.61 -7.59 -39.80 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.77 Total: 7.47 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 0.63 Total: -4.28 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.04 Total: -52.81 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.29 Total: -13.18 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.20 -7.59 -39.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205774339.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.811 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds