Wall clock time and date at job start Tue Mar 31 2020 14:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3 6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1 7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2 9 9 C 1.44575 * 118.64468 * 359.97438 * 8 6 5 10 10 C 1.54861 * 109.60063 * 89.24876 * 9 8 6 11 11 C 1.47094 * 110.32642 * 71.26818 * 10 9 8 12 12 C 1.52567 * 114.32399 * 297.20266 * 11 10 9 13 13 H 1.09000 * 109.48778 * 325.01917 * 12 11 10 14 14 N 1.46902 * 109.49063 * 204.97354 * 12 11 10 15 15 C 1.47484 * 110.99960 * 79.02764 * 14 12 11 16 16 C 1.53502 * 87.93230 * 138.70618 * 15 14 12 17 17 C 1.50704 * 114.16975 * 220.33029 * 16 15 14 18 18 H 1.07995 * 120.00464 * 93.84117 * 17 16 15 19 19 C 1.37878 * 119.99601 * 273.84115 * 17 16 15 20 20 N 1.31515 * 120.00448 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99720 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47312 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.46969 * 120.00152 * 21 19 17 24 24 H 1.48500 * 109.47024 * 239.99400 * 21 19 17 25 25 C 1.47475 * 111.00189 * 174.99464 * 14 12 11 26 26 C 1.50879 * 109.36302 * 85.00333 * 12 11 10 27 27 C 1.47604 * 118.64148 * 179.72439 * 8 6 5 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 35 35 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 37 37 H 1.08997 * 109.45012 * 209.28815 * 9 8 6 38 38 H 1.09004 * 109.44877 * 329.23642 * 9 8 6 39 39 H 1.08999 * 109.33147 * 191.52879 * 10 9 8 40 40 H 1.09002 * 109.33288 * 311.00375 * 10 9 8 41 41 H 1.08999 * 108.51267 * 58.44874 * 11 10 9 42 42 H 1.08996 * 108.51517 * 175.94608 * 11 10 9 43 43 H 1.09006 * 113.47504 * 253.47601 * 15 14 12 44 44 H 1.09002 * 113.47721 * 23.93137 * 15 14 12 45 45 H 1.09005 * 114.17274 * 87.62248 * 16 15 14 46 46 H 0.97000 * 120.00257 * 179.97438 * 20 19 17 47 47 H 1.09003 * 113.47714 * 336.06697 * 25 14 12 48 48 H 1.08999 * 113.47319 * 106.52938 * 25 14 12 49 49 H 1.09008 * 109.36406 * 28.31254 * 26 12 11 50 50 H 1.09006 * 109.36367 * 148.04431 * 26 12 11 51 51 H 1.09002 * 108.95217 * 342.84390 * 27 8 6 52 52 H 1.09002 * 108.94544 * 101.47557 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0140 -0.6845 -1.1854 6 6 1.6523 -0.1729 -2.3772 7 8 0.9510 0.8182 -2.4252 8 7 2.0682 -0.7601 -3.5168 9 6 2.9021 -1.9376 -3.4255 10 6 2.0106 -3.2028 -3.3736 11 6 1.3881 -3.4434 -4.6844 12 6 0.4455 -2.3358 -5.1453 13 1 -0.0735 -1.9178 -4.2827 14 7 -0.5365 -2.8886 -6.0877 15 6 -1.6108 -3.6030 -5.3731 16 6 -2.6082 -2.9684 -6.3524 17 6 -3.8944 -2.5116 -5.7136 18 1 -3.9990 -1.4895 -5.3810 19 6 -4.9378 -3.3988 -5.5539 20 7 -4.8107 -4.6434 -5.9594 21 14 -6.5319 -2.8328 -4.7616 22 1 -6.4206 -1.3980 -4.3954 23 1 -7.6524 -3.0144 -5.7191 24 1 -6.7899 -3.6364 -3.5397 25 6 -1.5381 -1.8734 -6.4634 26 6 1.2430 -1.2518 -5.8274 27 6 1.6488 -0.1778 -4.8066 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 -1.7488 1.2493 35 1 3.1300 -0.7207 1.2495 36 1 1.6766 -0.2073 2.1393 37 1 3.5545 -1.9889 -4.2971 38 1 3.5082 -1.8838 -2.5211 39 1 2.6212 -4.0635 -3.1008 40 1 1.2313 -3.0646 -2.6241 41 1 2.1779 -3.5568 -5.4270 42 1 0.8275 -4.3769 -4.6353 43 1 -1.5450 -4.6874 -5.4620 44 1 -1.7425 -3.2712 -4.3432 45 1 -2.7590 -3.5396 -7.2685 46 1 -5.5446 -5.2676 -5.8467 47 1 -1.6504 -1.0799 -5.7245 48 1 -1.4107 -1.4919 -7.4764 49 1 2.1377 -1.6872 -6.2726 50 1 0.6364 -0.7943 -6.6090 51 1 0.8016 0.4865 -4.6364 52 1 2.4746 0.4028 -5.2180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254298737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:47 Heat of formation + Delta-G solvation = -48.450754 kcal Electronic energy + Delta-G solvation = -29947.581565 eV Core-core repulsion = 26141.200516 eV Total energy + Delta-G solvation = -3806.381049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04201 -39.65946 -38.02069 -36.48109 -34.34911 -33.46525 -32.76318 -32.05440 -28.24688 -27.56974 -27.46545 -26.45956 -25.38592 -24.56484 -23.27430 -22.51967 -20.80263 -19.83726 -19.12858 -18.60112 -17.82870 -16.92187 -16.61231 -16.18806 -15.71826 -15.24951 -14.79181 -14.59113 -14.54629 -14.22568 -14.05299 -13.80152 -13.59638 -13.26785 -13.08919 -12.68587 -12.56578 -12.33985 -12.23061 -12.04839 -11.99494 -11.84579 -11.68171 -11.48799 -11.38433 -11.29478 -11.13408 -11.07113 -10.91815 -10.66352 -10.58611 -10.46662 -10.41788 -10.12654 -9.94299 -9.61657 -9.11120 -8.88588 -8.72714 -8.41719 -7.94388 -6.04023 -4.07883 2.12525 2.85085 3.28828 3.37132 3.41671 3.77097 4.41133 4.58638 4.60260 4.62851 4.77707 4.83874 4.96248 5.01183 5.07008 5.18289 5.26601 5.30254 5.39556 5.41863 5.45187 5.52811 5.58760 5.62491 5.64725 5.73226 5.75347 5.83450 5.85770 5.87451 6.05013 6.09231 6.15663 6.18449 6.26398 6.28746 6.30591 6.41511 6.44935 6.55550 6.57898 6.63478 6.70077 6.82832 7.15636 7.22185 7.34115 7.75054 7.93500 8.12369 8.34936 8.40003 8.95610 9.57088 11.05626 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003813 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.791184 B = 7342.232454 C = 8603.740200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.135 3.865 3 C -0.182 4.182 4 C -0.140 4.140 5 O -0.361 6.361 6 C 0.648 3.352 7 O -0.569 6.569 8 N -0.585 5.585 9 C 0.115 3.885 10 C -0.132 4.132 11 C -0.109 4.109 12 C 0.058 3.942 13 H 0.044 0.956 14 N -0.481 5.481 15 C 0.008 3.992 16 C 0.042 3.958 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.887 5.887 21 Si 0.889 3.111 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.004 4.004 26 C -0.124 4.124 27 C 0.129 3.871 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.261 0.739 47 H 0.053 0.947 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.342 6.892 10.001 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.098 3.902 3 C -0.239 4.239 4 C -0.197 4.197 5 O -0.276 6.276 6 C 0.403 3.597 7 O -0.458 6.458 8 N -0.325 5.325 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.147 4.147 12 C -0.052 4.052 13 H 0.062 0.938 14 N -0.203 5.203 15 C -0.121 4.121 16 C 0.023 3.977 17 C -0.553 4.553 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.133 4.133 26 C -0.163 4.163 27 C 0.008 3.992 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.104 0.896 51 H 0.111 0.889 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.482 6.696 9.534 21.848 hybrid contribution -1.295 0.547 1.248 1.880 sum 17.187 7.242 10.782 21.543 Atomic orbital electron populations 1.22518 0.93836 1.03219 1.04596 1.22040 0.94508 0.92025 0.81578 1.22508 1.01244 0.95591 1.04584 1.21847 1.01969 1.01268 0.94589 1.86307 1.71438 1.56181 1.13631 1.18116 0.78612 0.81695 0.81305 1.90883 1.41023 1.27166 1.86761 1.46659 1.52483 1.29742 1.03589 1.21596 0.92399 0.84017 1.02789 1.21239 0.99733 0.97534 0.98618 1.20363 0.98618 0.99465 0.96244 1.21584 0.94743 0.93953 0.94906 0.93823 1.68952 1.07465 1.15494 1.28429 1.23978 0.91677 0.98777 0.97648 1.20080 0.90837 0.91254 0.95552 1.21086 0.98023 0.96669 1.39478 0.92444 1.25003 0.98420 0.94924 0.95205 1.69977 1.32274 1.03684 1.46495 0.86589 0.83680 0.78947 0.79136 1.19700 1.20877 1.21017 1.23948 0.94000 0.96148 0.99186 1.21801 1.00655 0.96195 0.97620 1.21842 1.00898 0.95717 0.80781 0.92016 0.89269 0.91292 0.91294 0.92400 0.89370 0.91405 0.91649 0.90283 0.90282 0.90059 0.90790 0.91804 0.92173 0.91639 0.92005 0.93210 0.91854 0.92973 0.92909 0.92167 0.91273 0.89565 0.88945 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 2 C 0.14 1.52 1.13 -90.62 -0.10 1.41 16 3 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 4 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 5 O -0.36 -4.71 8.57 -40.32 -0.35 -5.06 16 6 C 0.65 9.50 7.64 54.06 0.41 9.91 16 7 O -0.57 -9.58 11.16 -19.28 -0.22 -9.80 16 8 N -0.58 -7.58 2.25 -178.53 -0.40 -7.98 16 9 C 0.12 1.23 5.39 -4.09 -0.02 1.21 16 10 C -0.13 -1.57 5.73 -28.58 -0.16 -1.74 16 11 C -0.11 -1.54 4.78 -29.79 -0.14 -1.69 16 12 C 0.06 0.95 1.16 -69.00 -0.08 0.87 16 13 H 0.04 0.83 6.89 -51.93 -0.36 0.48 16 14 N -0.48 -9.54 6.11 -238.20 -1.45 -11.00 16 15 C 0.01 0.19 6.59 -7.56 -0.05 0.14 16 16 C 0.04 1.06 3.77 -91.25 -0.34 0.71 16 17 C -0.51 -14.22 8.82 -34.44 -0.30 -14.53 16 18 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 19 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 20 N -0.89 -25.76 13.26 55.43 0.74 -25.03 16 21 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 C 0.00 -0.09 5.86 -7.56 -0.04 -0.13 16 26 C -0.12 -1.68 5.26 -27.47 -0.14 -1.83 16 27 C 0.13 1.64 6.07 -3.11 -0.02 1.62 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 1.14 5.88 -51.93 -0.31 0.84 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.08 0.79 7.25 -51.93 -0.38 0.42 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 42 H 0.06 1.05 7.44 -51.93 -0.39 0.66 16 43 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.05 1.20 7.58 -51.93 -0.39 0.80 16 45 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.05 1.14 7.80 -51.93 -0.41 0.73 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.07 0.83 7.32 -51.92 -0.38 0.45 16 50 H 0.09 1.23 6.78 -51.93 -0.35 0.88 16 51 H 0.09 1.36 6.95 -51.93 -0.36 1.00 16 52 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -30.19 392.59 -10.40 -40.59 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -9.46 Total: 2.62 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.15 Total: -6.64 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -1.12 Total: -44.01 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.56 Total: -14.86 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.19 -10.40 -40.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254298737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.860 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds