Wall clock time and date at job start Tue Mar 31 2020 14:48:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53006 * 109.47127 * 2 1
4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3
5 5 O 1.45194 * 109.47339 * 239.99574 * 2 1 3
6 6 C 1.34639 * 116.99841 * 60.00459 * 5 2 1
7 7 O 1.21508 * 119.99991 * 359.97438 * 6 5 2
8 8 N 1.34780 * 120.00005 * 179.97438 * 6 5 2
9 9 C 1.44575 * 118.64468 * 359.97438 * 8 6 5
10 10 C 1.54861 * 109.60063 * 89.24876 * 9 8 6
11 11 C 1.47094 * 110.32642 * 71.26818 * 10 9 8
12 12 C 1.52567 * 114.32399 * 297.20266 * 11 10 9
13 13 H 1.09000 * 109.48778 * 325.01917 * 12 11 10
14 14 N 1.46902 * 109.49063 * 204.97354 * 12 11 10
15 15 C 1.47484 * 110.99960 * 79.02764 * 14 12 11
16 16 C 1.53502 * 87.93230 * 138.70618 * 15 14 12
17 17 C 1.50704 * 114.16975 * 220.33029 * 16 15 14
18 18 H 1.07995 * 120.00464 * 93.84117 * 17 16 15
19 19 C 1.37878 * 119.99601 * 273.84115 * 17 16 15
20 20 N 1.31515 * 120.00448 * 359.97438 * 19 17 16
21 21 Si 1.86800 * 119.99720 * 179.97438 * 19 17 16
22 22 H 1.48492 * 109.47312 * 359.97438 * 21 19 17
23 23 H 1.48507 * 109.46969 * 120.00152 * 21 19 17
24 24 H 1.48500 * 109.47024 * 239.99400 * 21 19 17
25 25 C 1.47475 * 111.00189 * 174.99464 * 14 12 11
26 26 C 1.50879 * 109.36302 * 85.00333 * 12 11 10
27 27 C 1.47604 * 118.64148 * 179.72439 * 8 6 5
28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3
30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3
31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1
32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1
33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1
34 34 H 1.09002 * 109.46716 * 60.00091 * 4 2 1
35 35 H 1.09000 * 109.47486 * 180.02562 * 4 2 1
36 36 H 1.09001 * 109.47362 * 300.00732 * 4 2 1
37 37 H 1.08997 * 109.45012 * 209.28815 * 9 8 6
38 38 H 1.09004 * 109.44877 * 329.23642 * 9 8 6
39 39 H 1.08999 * 109.33147 * 191.52879 * 10 9 8
40 40 H 1.09002 * 109.33288 * 311.00375 * 10 9 8
41 41 H 1.08999 * 108.51267 * 58.44874 * 11 10 9
42 42 H 1.08996 * 108.51517 * 175.94608 * 11 10 9
43 43 H 1.09006 * 113.47504 * 253.47601 * 15 14 12
44 44 H 1.09002 * 113.47721 * 23.93137 * 15 14 12
45 45 H 1.09005 * 114.17274 * 87.62248 * 16 15 14
46 46 H 0.97000 * 120.00257 * 179.97438 * 20 19 17
47 47 H 1.09003 * 113.47714 * 336.06697 * 25 14 12
48 48 H 1.08999 * 113.47319 * 106.52938 * 25 14 12
49 49 H 1.09008 * 109.36406 * 28.31254 * 26 12 11
50 50 H 1.09006 * 109.36367 * 148.04431 * 26 12 11
51 51 H 1.09002 * 108.95217 * 342.84390 * 27 8 6
52 52 H 1.09002 * 108.94544 * 101.47557 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7211 1.2493
5 8 2.0140 -0.6845 -1.1854
6 6 1.6523 -0.1729 -2.3772
7 8 0.9510 0.8182 -2.4252
8 7 2.0682 -0.7601 -3.5168
9 6 2.9021 -1.9376 -3.4255
10 6 2.0106 -3.2028 -3.3736
11 6 1.3881 -3.4434 -4.6844
12 6 0.4455 -2.3358 -5.1453
13 1 -0.0735 -1.9178 -4.2827
14 7 -0.5365 -2.8886 -6.0877
15 6 -1.6108 -3.6030 -5.3731
16 6 -2.6082 -2.9684 -6.3524
17 6 -3.8944 -2.5116 -5.7136
18 1 -3.9990 -1.4895 -5.3810
19 6 -4.9378 -3.3988 -5.5539
20 7 -4.8107 -4.6434 -5.9594
21 14 -6.5319 -2.8328 -4.7616
22 1 -6.4206 -1.3980 -4.3954
23 1 -7.6524 -3.0144 -5.7191
24 1 -6.7899 -3.6364 -3.5397
25 6 -1.5381 -1.8734 -6.4634
26 6 1.2430 -1.2518 -5.8274
27 6 1.6488 -0.1778 -4.8066
28 1 -0.3633 -1.0277 0.0005
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3634 0.5139 0.8900
31 1 1.6767 1.9563 0.8899
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8900
34 1 1.6767 -1.7488 1.2493
35 1 3.1300 -0.7207 1.2495
36 1 1.6766 -0.2073 2.1393
37 1 3.5545 -1.9889 -4.2971
38 1 3.5082 -1.8838 -2.5211
39 1 2.6212 -4.0635 -3.1008
40 1 1.2313 -3.0646 -2.6241
41 1 2.1779 -3.5568 -5.4270
42 1 0.8275 -4.3769 -4.6353
43 1 -1.5450 -4.6874 -5.4620
44 1 -1.7425 -3.2712 -4.3432
45 1 -2.7590 -3.5396 -7.2685
46 1 -5.5446 -5.2676 -5.8467
47 1 -1.6504 -1.0799 -5.7245
48 1 -1.4107 -1.4919 -7.4764
49 1 2.1377 -1.6872 -6.2726
50 1 0.6364 -0.7943 -6.6090
51 1 0.8016 0.4865 -4.6364
52 1 2.4746 0.4028 -5.2180
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001254298737.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:48:46
Heat of formation + Delta-G solvation = -66.799719 kcal
Electronic energy + Delta-G solvation = -29948.377235 eV
Core-core repulsion = 26141.200516 eV
Total energy + Delta-G solvation = -3807.176720 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-42.12007 -41.14458 -39.23584 -37.62679 -35.50440 -34.78599 -34.23197 -33.47320
-29.90013 -28.38797 -28.29960 -27.79864 -26.98013 -26.17920 -24.72692 -23.78483
-21.80543 -21.13298 -20.54435 -20.12830 -18.93140 -18.57034 -17.87770 -17.34267
-16.91859 -16.69810 -16.38075 -16.00983 -15.82126 -15.44426 -15.34414 -14.95140
-14.60993 -14.49158 -14.32500 -14.04174 -13.66701 -13.51020 -13.31963 -13.24219
-13.10340 -12.98998 -12.93798 -12.89397 -12.86219 -12.59232 -12.49975 -12.36660
-12.28097 -12.20770 -12.01116 -11.77987 -11.52389 -11.37933 -11.33074 -11.07840
-11.02725 -10.80061 -10.52929 -9.78132 -9.68104 -8.19700 -6.30660 1.14704
1.36542 1.38303 1.50241 1.75999 2.38231 2.84230 3.09183 3.18644
3.74261 3.75105 3.77849 3.79521 3.94281 3.99406 4.01252 4.06196
4.26156 4.32244 4.39894 4.45820 4.51442 4.56473 4.59549 4.65205
4.69318 4.69848 4.74527 4.74772 4.82137 4.84669 4.87365 4.89366
4.95043 5.04085 5.11158 5.12370 5.15225 5.19104 5.21804 5.26353
5.32330 5.39984 5.47569 5.55959 5.58331 5.61510 5.81815 6.26874
6.30187 6.38831 6.78030 7.28451 7.37666 8.90228
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.012093 B = 0.003813 C = 0.003254
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2314.791184 B = 7342.232454 C = 8603.740200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.125 3.875
3 C -0.176 4.176
4 C -0.133 4.133
5 O -0.361 6.361
6 C 0.640 3.360
7 O -0.598 6.598
8 N -0.585 5.585
9 C 0.116 3.884
10 C -0.126 4.126
11 C -0.103 4.103
12 C 0.058 3.942
13 H 0.012 0.988
14 N -0.469 5.469
15 C 0.022 3.978
16 C 0.023 3.977
17 C -0.533 4.533
18 H 0.052 0.948
19 C 0.018 3.982
20 N -0.919 5.919
21 Si 0.954 3.046
22 H -0.269 1.269
23 H -0.274 1.274
24 H -0.279 1.279
25 C 0.014 3.986
26 C -0.116 4.116
27 C 0.133 3.867
28 H 0.050 0.950
29 H 0.055 0.945
30 H 0.091 0.909
31 H 0.089 0.911
32 H 0.068 0.932
33 H 0.059 0.941
34 H 0.064 0.936
35 H 0.077 0.923
36 H 0.100 0.900
37 H 0.108 0.892
38 H 0.095 0.905
39 H 0.101 0.899
40 H 0.035 0.965
41 H 0.084 0.916
42 H 0.041 0.959
43 H 0.047 0.953
44 H 0.033 0.967
45 H 0.035 0.965
46 H 0.264 0.736
47 H 0.046 0.954
48 H 0.079 0.921
49 H 0.097 0.903
50 H 0.080 0.920
51 H 0.065 0.935
52 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.619 7.418 10.933 24.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.089 3.911
3 C -0.233 4.233
4 C -0.190 4.190
5 O -0.275 6.275
6 C 0.395 3.605
7 O -0.490 6.490
8 N -0.324 5.324
9 C -0.007 4.007
10 C -0.165 4.165
11 C -0.141 4.141
12 C -0.051 4.051
13 H 0.030 0.970
14 N -0.191 5.191
15 C -0.108 4.108
16 C 0.004 3.996
17 C -0.571 4.571
18 H 0.070 0.930
19 C -0.181 4.181
20 N -0.557 5.557
21 Si 0.779 3.221
22 H -0.193 1.193
23 H -0.200 1.200
24 H -0.205 1.205
25 C -0.115 4.115
26 C -0.154 4.154
27 C 0.012 3.988
28 H 0.069 0.931
29 H 0.074 0.926
30 H 0.110 0.890
31 H 0.107 0.893
32 H 0.087 0.913
33 H 0.077 0.923
34 H 0.083 0.917
35 H 0.096 0.904
36 H 0.119 0.881
37 H 0.126 0.874
38 H 0.113 0.887
39 H 0.119 0.881
40 H 0.054 0.946
41 H 0.103 0.897
42 H 0.060 0.940
43 H 0.066 0.934
44 H 0.052 0.948
45 H 0.054 0.946
46 H 0.073 0.927
47 H 0.065 0.935
48 H 0.097 0.903
49 H 0.116 0.884
50 H 0.098 0.902
51 H 0.084 0.916
52 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 20.779 7.214 10.466 24.359
hybrid contribution -2.003 0.373 0.962 2.254
sum 18.776 7.587 11.428 23.253
Atomic orbital electron populations
1.22483 0.95157 1.02286 1.04015 1.22371 0.93698 0.93053 0.82012
1.22440 1.01841 0.94890 1.04144 1.21862 1.02707 1.00913 0.93533
1.86312 1.71294 1.56329 1.13612 1.18389 0.78427 0.81592 0.82098
1.90875 1.42278 1.28597 1.87255 1.46811 1.52314 1.30215 1.03096
1.21779 0.91936 0.82049 1.04906 1.21194 0.99477 0.99573 0.96293
1.20354 0.98389 0.97108 0.98250 1.21671 0.94377 0.95744 0.93343
0.96969 1.68892 1.06860 1.14727 1.28629 1.23638 0.92690 0.97986
0.96448 1.20038 0.91540 0.93239 0.94802 1.21373 0.99440 0.96534
1.39757 0.93018 1.25776 1.01730 0.94949 0.95683 1.70083 1.33403
1.04700 1.47556 0.85570 0.79647 0.78534 0.78335 1.19332 1.19964
1.20484 1.23708 0.92688 0.95063 1.00065 1.21748 1.01047 0.95241
0.97382 1.21797 1.01157 0.95215 0.80660 0.93053 0.92640 0.89027
0.89256 0.91284 0.92251 0.91726 0.90439 0.88114 0.87396 0.88654
0.88054 0.94641 0.89749 0.94034 0.93396 0.94842 0.94640 0.92729
0.93542 0.90305 0.88430 0.90184 0.91643 0.88532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.52 8.37 71.98 0.60 -3.91 16
2 C 0.13 2.69 1.13 -10.79 -0.01 2.68 16
3 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16
4 C -0.13 -1.90 8.85 71.98 0.64 -1.26 16
5 O -0.36 -9.20 8.57 -55.48 -0.48 -9.67 16
6 C 0.64 18.74 7.64 129.79 0.99 19.74 16
7 O -0.60 -20.90 11.16 19.82 0.22 -20.68 16
8 N -0.58 -14.39 2.25 -949.14 -2.13 -16.53 16
9 C 0.12 2.13 5.39 87.37 0.47 2.60 16
10 C -0.13 -2.79 5.73 29.39 0.17 -2.62 16
11 C -0.10 -2.78 4.78 28.61 0.14 -2.64 16
12 C 0.06 1.89 1.16 44.08 0.05 1.94 16
13 H 0.01 0.48 6.89 -2.39 -0.02 0.47 16
14 N -0.47 -18.79 6.11 -907.53 -5.54 -24.33 16
15 C 0.02 1.06 6.59 83.56 0.55 1.61 16
16 C 0.02 1.20 3.77 -11.20 -0.04 1.16 16
17 C -0.53 -30.44 8.82 25.60 0.23 -30.22 16
18 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16
19 C 0.02 1.04 5.46 84.65 0.46 1.50 16
20 N -0.92 -54.76 13.26 21.45 0.28 -54.48 16
21 Si 0.95 44.63 29.54 68.60 2.03 46.66 16
22 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16
23 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16
24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
25 C 0.01 0.58 5.86 83.57 0.49 1.07 16
26 C -0.12 -2.92 5.26 30.12 0.16 -2.76 16
27 C 0.13 3.20 6.07 86.38 0.52 3.72 16
28 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
29 H 0.05 1.77 5.88 -2.39 -0.01 1.75 16
30 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16
31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
33 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16
34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16
37 H 0.11 1.43 8.07 -2.39 -0.02 1.41 16
38 H 0.10 1.55 7.25 -2.38 -0.02 1.53 16
39 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
41 H 0.08 1.89 7.36 -2.39 -0.02 1.87 16
42 H 0.04 1.31 7.44 -2.39 -0.02 1.30 16
43 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16
44 H 0.03 1.70 7.58 -2.39 -0.02 1.68 16
45 H 0.04 2.05 8.11 -2.38 -0.02 2.03 16
46 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16
47 H 0.05 2.06 7.80 -2.39 -0.02 2.04 16
48 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16
49 H 0.10 1.95 7.32 -2.38 -0.02 1.93 16
50 H 0.08 2.15 6.78 -2.38 -0.02 2.13 16
51 H 0.06 1.95 6.95 -2.39 -0.02 1.93 16
52 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16
Total: -1.00 -69.09 392.59 1.27 -67.82
By element:
Atomic # 1 Polarization: 20.64 SS G_CDS: 0.87 Total: 21.51 kcal
Atomic # 6 Polarization: -16.31 SS G_CDS: 6.02 Total: -10.29 kcal
Atomic # 7 Polarization: -87.95 SS G_CDS: -7.39 Total: -95.34 kcal
Atomic # 8 Polarization: -30.10 SS G_CDS: -0.25 Total: -30.35 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -69.09 1.27 -67.82 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254298737.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.022 kcal
(2) G-P(sol) polarization free energy of solvation -69.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.800 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds