Wall clock time and date at job start Tue Mar 31 2020 14:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99843 * 2 1 4 4 C 1.50700 * 109.47282 * 293.95467 * 3 2 1 5 5 H 1.08002 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99761 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46750 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46961 * 119.99321 * 8 6 4 11 11 H 1.48500 * 109.46986 * 240.00122 * 8 6 4 12 12 C 1.46897 * 111.00050 * 123.95291 * 2 1 3 13 13 H 1.09000 * 110.79134 * 292.78772 * 12 2 1 14 14 C 1.54970 * 110.72959 * 169.51942 * 12 2 1 15 15 C 1.54531 * 104.24125 * 204.21291 * 14 12 2 16 16 C 1.52955 * 106.17233 * 23.50313 * 15 14 12 17 17 C 1.52508 * 116.05654 * 228.08617 * 16 15 14 18 18 N 1.47249 * 87.73384 * 218.26077 * 17 16 15 19 19 C 1.34777 * 135.94155 * 206.28490 * 18 17 16 20 20 O 1.21513 * 120.00316 * 359.97438 * 19 18 17 21 21 O 1.34638 * 119.99672 * 179.72588 * 19 18 17 22 22 C 1.45202 * 116.99776 * 180.27362 * 21 19 18 23 23 C 1.53000 * 109.46964 * 60.00058 * 22 21 19 24 24 C 1.53008 * 109.46858 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47273 * 299.99862 * 22 21 19 26 26 C 1.47247 * 88.10856 * 26.53614 * 18 17 16 27 27 C 1.53352 * 107.64775 * 359.70272 * 16 15 14 28 28 H 1.09000 * 109.47485 * 296.04521 * 1 2 3 29 29 H 1.09004 * 109.47263 * 56.04538 * 1 2 3 30 30 H 1.09006 * 109.47034 * 176.03999 * 1 2 3 31 31 H 1.08997 * 109.47084 * 53.95577 * 3 2 1 32 32 H 1.09005 * 109.47194 * 173.95343 * 3 2 1 33 33 H 0.97000 * 120.00071 * 179.97438 * 7 6 4 34 34 H 1.08998 * 110.48307 * 322.90202 * 14 12 2 35 35 H 1.09005 * 110.47785 * 85.39515 * 14 12 2 36 36 H 1.09008 * 110.11274 * 264.32953 * 15 14 12 37 37 H 1.09002 * 110.11484 * 142.68348 * 15 14 12 38 38 H 1.08999 * 113.50458 * 103.54137 * 17 16 15 39 39 H 1.09000 * 113.56981 * 332.98963 * 17 16 15 40 40 H 1.08997 * 109.47363 * 60.00315 * 23 22 21 41 41 H 1.09005 * 109.46795 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46811 * 299.99419 * 23 22 21 43 43 H 1.08996 * 109.46984 * 60.00080 * 24 22 21 44 44 H 1.08996 * 109.46584 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47272 * 300.00133 * 24 22 21 46 46 H 1.08995 * 109.47307 * 59.99582 * 25 22 21 47 47 H 1.08999 * 109.47211 * 180.02562 * 25 22 21 48 48 H 1.09010 * 109.46887 * 300.00170 * 25 22 21 49 49 H 1.08996 * 113.50777 * 88.18175 * 26 18 17 50 50 H 1.09003 * 113.50756 * 218.74766 * 26 18 17 51 51 H 1.09003 * 110.54062 * 95.64505 * 27 16 15 52 52 H 1.08999 * 110.53445 * 218.29602 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.8165 3.2439 -3.9918 10 1 0.7567 5.3881 -2.8599 11 1 2.8258 4.5931 -3.8439 12 6 1.9954 -0.7659 1.1376 13 1 1.7656 -0.2674 2.0792 14 6 3.5225 -0.9854 0.9914 15 6 3.8068 -2.2510 1.8313 16 6 2.4853 -3.0173 1.9076 17 6 2.0655 -3.4922 3.2948 18 7 1.5723 -4.7256 2.6592 19 6 0.6330 -5.6507 2.9393 20 8 -0.0412 -5.5469 3.9449 21 8 0.4383 -6.6871 2.1022 22 6 -0.5943 -7.6416 2.4641 23 6 -1.9432 -6.9249 2.5517 24 6 -0.6689 -8.7396 1.4011 25 6 -0.2593 -8.2658 3.8201 26 6 2.5584 -4.5095 1.5873 27 6 1.4357 -2.2126 1.1314 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0710 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3445 0.1083 33 1 2.9880 4.9175 -0.7775 34 1 3.7855 -1.1538 -0.0529 35 1 4.0703 -0.1308 1.3886 36 1 4.1359 -1.9707 2.8320 37 1 4.5666 -2.8617 1.3435 38 1 1.2761 -2.8873 3.7409 39 1 2.9040 -3.6570 3.9713 40 1 -2.1819 -6.4803 1.5856 41 1 -2.7183 -7.6414 2.8238 42 1 -1.8903 -6.1425 3.3088 43 1 0.2920 -9.2502 1.3382 44 1 -1.4437 -9.4564 1.6730 45 1 -0.9077 -8.2947 0.4352 46 1 -0.2064 -7.4834 4.5771 47 1 -1.0342 -8.9827 4.0915 48 1 0.7018 -8.7764 3.7576 49 1 3.5323 -4.9519 1.7969 50 1 2.1843 -4.7617 0.5950 51 1 1.3472 -2.5841 0.1104 52 1 0.4712 -2.2539 1.6374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254773712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:09 Heat of formation + Delta-G solvation = -44.555613 kcal Electronic energy + Delta-G solvation = -28680.308635 eV Core-core repulsion = 24874.096492 eV Total energy + Delta-G solvation = -3806.212143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.26201 -40.14573 -37.46194 -36.54908 -34.38967 -33.92151 -32.31779 -29.34230 -28.60154 -27.67427 -27.61251 -26.74769 -26.38773 -25.64991 -23.59627 -21.83844 -21.43574 -19.55705 -19.26869 -18.52073 -17.83505 -16.84340 -16.55087 -16.30815 -15.73594 -15.33014 -14.90916 -14.76287 -14.52851 -14.34045 -14.05547 -13.76714 -13.42130 -13.23576 -13.10205 -12.77727 -12.67481 -12.45638 -12.15800 -12.13123 -12.07707 -11.89748 -11.70184 -11.67977 -11.51550 -11.22519 -11.16125 -10.99342 -10.84570 -10.60502 -10.55685 -10.44958 -10.42573 -10.23785 -10.19320 -10.08420 -9.70611 -9.16264 -8.90420 -8.42381 -7.22289 -6.01975 -4.02682 1.83363 2.74415 3.31125 3.38640 3.43460 3.60960 4.08233 4.41492 4.46408 4.49867 4.54561 4.64733 4.71234 4.87352 5.00406 5.19051 5.19711 5.25362 5.27840 5.32214 5.33984 5.41083 5.41991 5.48433 5.50447 5.58259 5.60735 5.65974 5.70175 5.74265 5.84075 5.93813 6.01277 6.03601 6.07131 6.09954 6.20249 6.23393 6.34296 6.35474 6.43810 6.57545 6.70294 6.80066 7.34631 7.37093 7.57858 7.82721 8.11793 8.21422 8.22534 8.58566 9.05529 9.61453 11.08943 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002409 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.005354 B =11620.072125 C =12246.302645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.533 5.533 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.080 3.920 13 H 0.037 0.963 14 C -0.111 4.111 15 C -0.103 4.103 16 C -0.095 4.095 17 C 0.139 3.861 18 N -0.633 5.633 19 C 0.680 3.320 20 O -0.571 6.571 21 O -0.361 6.361 22 C 0.135 3.865 23 C -0.184 4.184 24 C -0.140 4.140 25 C -0.183 4.183 26 C 0.115 3.885 27 C -0.087 4.087 28 H 0.009 0.991 29 H 0.073 0.927 30 H 0.045 0.955 31 H -0.012 1.012 32 H 0.034 0.966 33 H 0.260 0.740 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.087 0.913 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.768 -23.622 7.339 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.257 5.257 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.029 4.029 13 H 0.055 0.945 14 C -0.149 4.149 15 C -0.142 4.142 16 C -0.096 4.096 17 C 0.018 3.982 18 N -0.375 5.375 19 C 0.436 3.564 20 O -0.461 6.461 21 O -0.276 6.276 22 C 0.099 3.901 23 C -0.241 4.241 24 C -0.197 4.197 25 C -0.240 4.240 26 C -0.007 4.007 27 C -0.124 4.124 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.006 0.994 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.105 0.895 50 H 0.101 0.899 51 H 0.100 0.900 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.972 -23.892 7.286 25.056 hybrid contribution -0.521 0.881 0.049 1.025 sum -2.493 -23.012 7.335 24.281 Atomic orbital electron populations 1.22207 0.89091 0.99477 1.00401 1.62231 1.06656 1.17796 1.39055 1.19744 0.95653 0.81541 0.96415 1.21213 1.34546 0.96867 1.01727 0.91876 1.24987 0.95387 0.97389 0.96926 1.69967 1.38548 1.11387 1.33984 0.86470 0.78137 0.79329 0.83654 1.19692 1.21177 1.21039 1.22575 0.94594 0.92720 0.93029 0.94532 1.22381 0.95572 0.96145 1.00761 1.21908 0.94624 0.96797 1.00869 1.22217 0.98153 0.93879 0.95374 1.23077 0.98073 0.80980 0.96057 1.48262 1.35124 1.24968 1.29149 1.17295 0.79785 0.78435 0.80844 1.90893 1.49518 1.77296 1.28397 1.86317 1.56295 1.34448 1.50571 1.22069 0.85676 0.86752 0.95648 1.22522 0.95349 1.02397 1.03836 1.21853 1.02995 0.96596 0.98275 1.22510 1.01938 1.02231 0.97294 1.23186 0.91687 0.93629 0.92239 1.22070 0.95927 0.94462 0.99978 0.97291 0.90821 0.93639 0.99391 0.94827 0.93040 0.90263 0.91495 0.91260 0.91014 0.89936 0.89413 0.92040 0.91202 0.89391 0.91546 0.90163 0.91369 0.89440 0.91169 0.92289 0.89507 0.89859 0.89958 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.10 60.06 0.55 1.26 16 2 N -0.53 -11.12 4.65 -233.73 -1.09 -12.21 16 3 C 0.19 4.88 4.62 -4.97 -0.02 4.85 16 4 C -0.50 -14.01 8.46 -34.44 -0.29 -14.30 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.08 1.34 2.60 -65.55 -0.17 1.17 16 13 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 14 C -0.11 -1.65 5.49 -24.89 -0.14 -1.79 16 15 C -0.10 -1.10 6.35 -25.95 -0.16 -1.26 16 16 C -0.09 -1.04 1.25 -154.71 -0.19 -1.23 16 17 C 0.14 1.51 7.71 -7.93 -0.06 1.45 16 18 N -0.63 -7.77 3.66 -190.89 -0.70 -8.46 16 19 C 0.68 9.51 8.26 54.06 0.45 9.95 16 20 O -0.57 -9.07 12.65 -19.28 -0.24 -9.31 16 21 O -0.36 -4.57 9.91 -40.32 -0.40 -4.97 16 22 C 0.14 1.37 1.13 -90.62 -0.10 1.27 16 23 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16 24 C -0.14 -1.02 8.85 37.16 0.33 -0.70 16 25 C -0.18 -1.73 8.37 37.15 0.31 -1.42 16 26 C 0.12 1.15 7.86 -7.78 -0.06 1.09 16 27 C -0.09 -1.19 4.34 -25.43 -0.11 -1.30 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 30 H 0.04 0.76 6.94 -51.93 -0.36 0.40 16 31 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 32 H 0.03 0.90 6.85 -51.93 -0.36 0.54 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.07 7.77 -51.93 -0.40 0.66 16 36 H 0.07 0.66 7.96 -51.92 -0.41 0.25 16 37 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 38 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 1.05 5.88 -51.93 -0.31 0.74 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.09 0.70 8.13 -51.93 -0.42 0.28 16 50 H 0.08 0.84 8.11 -51.93 -0.42 0.42 16 51 H 0.08 1.19 8.09 -51.93 -0.42 0.77 16 52 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 LS Contribution 402.52 15.07 6.07 6.07 Total: -1.00 -31.66 402.52 -9.69 -41.35 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -9.57 Total: -2.13 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 0.53 Total: -1.08 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -1.05 Total: -46.42 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.64 Total: -14.28 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.66 -9.69 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254773712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.204 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds