Wall clock time and date at job start Tue Mar 31 2020 14:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46902 * 110.99843 * 2 1 4 4 C 1.50700 * 109.47282 * 293.95467 * 3 2 1 5 5 H 1.08002 * 119.99899 * 359.97438 * 4 3 2 6 6 C 1.37876 * 119.99761 * 180.02562 * 4 3 2 7 7 N 1.31516 * 120.00257 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99932 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.46750 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46961 * 119.99321 * 8 6 4 11 11 H 1.48500 * 109.46986 * 240.00122 * 8 6 4 12 12 C 1.46897 * 111.00050 * 123.95291 * 2 1 3 13 13 H 1.09000 * 110.79134 * 292.78772 * 12 2 1 14 14 C 1.54970 * 110.72959 * 169.51942 * 12 2 1 15 15 C 1.54531 * 104.24125 * 204.21291 * 14 12 2 16 16 C 1.52955 * 106.17233 * 23.50313 * 15 14 12 17 17 C 1.52508 * 116.05654 * 228.08617 * 16 15 14 18 18 N 1.47249 * 87.73384 * 218.26077 * 17 16 15 19 19 C 1.34777 * 135.94155 * 206.28490 * 18 17 16 20 20 O 1.21513 * 120.00316 * 359.97438 * 19 18 17 21 21 O 1.34638 * 119.99672 * 179.72588 * 19 18 17 22 22 C 1.45202 * 116.99776 * 180.27362 * 21 19 18 23 23 C 1.53000 * 109.46964 * 60.00058 * 22 21 19 24 24 C 1.53008 * 109.46858 * 179.97438 * 22 21 19 25 25 C 1.52994 * 109.47273 * 299.99862 * 22 21 19 26 26 C 1.47247 * 88.10856 * 26.53614 * 18 17 16 27 27 C 1.53352 * 107.64775 * 359.70272 * 16 15 14 28 28 H 1.09000 * 109.47485 * 296.04521 * 1 2 3 29 29 H 1.09004 * 109.47263 * 56.04538 * 1 2 3 30 30 H 1.09006 * 109.47034 * 176.03999 * 1 2 3 31 31 H 1.08997 * 109.47084 * 53.95577 * 3 2 1 32 32 H 1.09005 * 109.47194 * 173.95343 * 3 2 1 33 33 H 0.97000 * 120.00071 * 179.97438 * 7 6 4 34 34 H 1.08998 * 110.48307 * 322.90202 * 14 12 2 35 35 H 1.09005 * 110.47785 * 85.39515 * 14 12 2 36 36 H 1.09008 * 110.11274 * 264.32953 * 15 14 12 37 37 H 1.09002 * 110.11484 * 142.68348 * 15 14 12 38 38 H 1.08999 * 113.50458 * 103.54137 * 17 16 15 39 39 H 1.09000 * 113.56981 * 332.98963 * 17 16 15 40 40 H 1.08997 * 109.47363 * 60.00315 * 23 22 21 41 41 H 1.09005 * 109.46795 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.46811 * 299.99419 * 23 22 21 43 43 H 1.08996 * 109.46984 * 60.00080 * 24 22 21 44 44 H 1.08996 * 109.46584 * 179.97438 * 24 22 21 45 45 H 1.08998 * 109.47272 * 300.00133 * 24 22 21 46 46 H 1.08995 * 109.47307 * 59.99582 * 25 22 21 47 47 H 1.08999 * 109.47211 * 180.02562 * 25 22 21 48 48 H 1.09010 * 109.46887 * 300.00170 * 25 22 21 49 49 H 1.08996 * 113.50777 * 88.18175 * 26 18 17 50 50 H 1.09003 * 113.50756 * 218.74766 * 26 18 17 51 51 H 1.09003 * 110.54062 * 95.64505 * 27 16 15 52 52 H 1.08999 * 110.53445 * 218.29602 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5113 -2.0488 6 6 2.0276 3.3492 -1.5288 7 7 2.7128 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.8165 3.2439 -3.9918 10 1 0.7567 5.3881 -2.8599 11 1 2.8258 4.5931 -3.8439 12 6 1.9954 -0.7659 1.1376 13 1 1.7656 -0.2674 2.0792 14 6 3.5225 -0.9854 0.9914 15 6 3.8068 -2.2510 1.8313 16 6 2.4853 -3.0173 1.9076 17 6 2.0655 -3.4922 3.2948 18 7 1.5723 -4.7256 2.6592 19 6 0.6330 -5.6507 2.9393 20 8 -0.0412 -5.5469 3.9449 21 8 0.4383 -6.6871 2.1022 22 6 -0.5943 -7.6416 2.4641 23 6 -1.9432 -6.9249 2.5517 24 6 -0.6689 -8.7396 1.4011 25 6 -0.2593 -8.2658 3.8201 26 6 2.5584 -4.5095 1.5873 27 6 1.4357 -2.2126 1.1314 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0710 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3445 0.1083 33 1 2.9880 4.9175 -0.7775 34 1 3.7855 -1.1538 -0.0529 35 1 4.0703 -0.1308 1.3886 36 1 4.1359 -1.9707 2.8320 37 1 4.5666 -2.8617 1.3435 38 1 1.2761 -2.8873 3.7409 39 1 2.9040 -3.6570 3.9713 40 1 -2.1819 -6.4803 1.5856 41 1 -2.7183 -7.6414 2.8238 42 1 -1.8903 -6.1425 3.3088 43 1 0.2920 -9.2502 1.3382 44 1 -1.4437 -9.4564 1.6730 45 1 -0.9077 -8.2947 0.4352 46 1 -0.2064 -7.4834 4.5771 47 1 -1.0342 -8.9827 4.0915 48 1 0.7018 -8.7764 3.7576 49 1 3.5323 -4.9519 1.7969 50 1 2.1843 -4.7617 0.5950 51 1 1.3472 -2.5841 0.1104 52 1 0.4712 -2.2539 1.6374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254773712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:08 Heat of formation + Delta-G solvation = -64.109340 kcal Electronic energy + Delta-G solvation = -28681.156548 eV Core-core repulsion = 24874.096492 eV Total energy + Delta-G solvation = -3807.060056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.21120 -41.09950 -38.79488 -37.64541 -35.67153 -34.97262 -34.24742 -30.40793 -30.11663 -28.40792 -28.37677 -28.30412 -27.28818 -27.07780 -25.05237 -23.32355 -22.56925 -20.74085 -20.45509 -19.47158 -18.75271 -18.50510 -17.74540 -17.43818 -17.00685 -16.49764 -16.34663 -15.99928 -15.69790 -15.33644 -15.18613 -14.99158 -14.78972 -14.41758 -14.24862 -14.04873 -13.71243 -13.44939 -13.34454 -13.15397 -12.97694 -12.91183 -12.87402 -12.83229 -12.62461 -12.56326 -12.52236 -12.44814 -12.23817 -12.14393 -11.95350 -11.81426 -11.62781 -11.40518 -11.38421 -11.18975 -11.13015 -11.02560 -10.59272 -9.83282 -8.99754 -8.18864 -6.28124 0.96445 1.41277 1.41859 1.55313 1.74033 2.41264 2.77669 3.13292 3.15403 3.36221 3.56849 3.73417 3.76405 3.79531 3.93956 3.99697 4.19576 4.31793 4.43987 4.47073 4.50121 4.54596 4.58968 4.60267 4.62302 4.63204 4.67825 4.74421 4.75146 4.81907 4.86868 4.87572 4.94598 5.00659 5.04534 5.07631 5.11854 5.17434 5.22299 5.26640 5.29322 5.31652 5.32220 5.42599 5.47878 5.49508 5.69644 6.09831 6.35955 6.63965 6.71646 6.88716 7.23008 7.41380 8.92325 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002409 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.005354 B =11620.072125 C =12246.302645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.538 5.538 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.071 3.929 13 H 0.023 0.977 14 C -0.110 4.110 15 C -0.088 4.088 16 C -0.087 4.087 17 C 0.138 3.862 18 N -0.640 5.640 19 C 0.672 3.328 20 O -0.599 6.599 21 O -0.367 6.367 22 C 0.123 3.877 23 C -0.180 4.180 24 C -0.134 4.134 25 C -0.177 4.177 26 C 0.123 3.877 27 C -0.075 4.075 28 H 0.003 0.997 29 H 0.056 0.944 30 H 0.075 0.925 31 H -0.047 1.047 32 H 0.015 0.985 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.063 0.937 49 H 0.119 0.881 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.342 -26.023 6.526 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.203 1.203 12 C -0.037 4.037 13 H 0.041 0.959 14 C -0.148 4.148 15 C -0.126 4.126 16 C -0.088 4.088 17 C 0.017 3.983 18 N -0.382 5.382 19 C 0.429 3.571 20 O -0.491 6.491 21 O -0.282 6.282 22 C 0.087 3.913 23 C -0.237 4.237 24 C -0.191 4.191 25 C -0.234 4.234 26 C 0.001 3.999 27 C -0.113 4.113 28 H 0.021 0.979 29 H 0.074 0.926 30 H 0.094 0.906 31 H -0.029 1.029 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.090 0.910 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.111 0.889 48 H 0.082 0.918 49 H 0.137 0.863 50 H 0.102 0.898 51 H 0.098 0.902 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.540 -26.314 6.462 27.140 hybrid contribution -0.695 1.622 0.340 1.797 sum -2.235 -24.693 6.802 25.710 Atomic orbital electron populations 1.22182 0.88316 1.00949 0.99288 1.62177 1.07456 1.15224 1.41342 1.19375 0.94309 0.83675 0.94411 1.21516 1.34560 0.97471 1.02397 0.92051 1.25893 0.95135 0.98096 1.00586 1.70090 1.39491 1.11848 1.36060 0.85364 0.78084 0.78156 0.79187 1.18814 1.20636 1.20278 1.22745 0.96350 0.93769 0.90875 0.95872 1.22344 0.93691 0.97932 1.00857 1.21838 0.94972 0.94590 1.01219 1.22004 0.97146 0.94417 0.95273 1.23225 0.98484 0.80367 0.96211 1.48432 1.35074 1.24757 1.29948 1.17516 0.79908 0.78912 0.80788 1.90880 1.50585 1.78041 1.29600 1.86322 1.57056 1.34429 1.50384 1.22448 0.84923 0.86951 0.97023 1.22479 0.96444 1.02197 1.02625 1.21876 1.04177 0.95902 0.97174 1.22450 1.03078 1.01722 0.96168 1.23328 0.92515 0.92235 0.91800 1.21914 0.96483 0.92570 1.00331 0.97864 0.92562 0.90641 1.02934 0.96690 0.92761 0.91542 0.93307 0.89473 0.88192 0.91414 0.86606 0.92355 0.88867 0.92340 0.91007 0.87793 0.91499 0.92257 0.88934 0.91768 0.86336 0.89753 0.90234 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.10 127.69 1.16 2.79 16 2 N -0.54 -23.11 4.65 -893.37 -4.15 -27.26 16 3 C 0.21 11.12 4.62 85.56 0.40 11.51 16 4 C -0.52 -29.64 8.46 25.60 0.22 -29.42 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.04 5.46 84.65 0.46 0.50 16 7 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 8 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.07 2.44 2.60 46.32 0.12 2.56 16 13 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 14 C -0.11 -3.27 5.49 31.79 0.17 -3.10 16 15 C -0.09 -1.64 6.35 31.10 0.20 -1.44 16 16 C -0.09 -1.71 1.25 -52.31 -0.07 -1.78 16 17 C 0.14 2.73 7.71 83.45 0.64 3.37 16 18 N -0.64 -14.63 3.66 -988.27 -3.62 -18.25 16 19 C 0.67 18.37 8.26 129.79 1.07 19.44 16 20 O -0.60 -19.28 12.65 19.80 0.25 -19.03 16 21 O -0.37 -8.87 9.91 -55.47 -0.55 -9.42 16 22 C 0.12 2.31 1.13 -10.79 -0.01 2.30 16 23 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 24 C -0.13 -1.63 8.85 71.98 0.64 -0.99 16 25 C -0.18 -3.14 8.37 71.98 0.60 -2.54 16 26 C 0.12 2.08 7.86 83.55 0.66 2.73 16 27 C -0.08 -2.02 4.34 31.44 0.14 -1.88 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.06 2.40 6.76 -2.38 -0.02 2.39 16 30 H 0.07 2.51 6.94 -2.38 -0.02 2.49 16 31 H -0.05 -2.78 8.12 -2.39 -0.02 -2.80 16 32 H 0.02 0.85 6.85 -2.38 -0.02 0.83 16 33 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 1.60 7.77 -2.38 -0.02 1.58 16 36 H 0.09 1.38 7.96 -2.38 -0.02 1.36 16 37 H 0.10 1.39 7.95 -2.39 -0.02 1.37 16 38 H 0.07 1.55 8.06 -2.39 -0.02 1.54 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 43 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 49 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 50 H 0.08 1.46 8.11 -2.39 -0.02 1.44 16 51 H 0.08 2.20 8.09 -2.39 -0.02 2.18 16 52 H 0.05 1.52 7.79 -2.39 -0.02 1.50 16 Total: -1.00 -71.69 402.52 2.11 -69.58 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.87 Total: 12.79 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.00 Total: 1.13 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -7.48 Total: -101.52 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.30 Total: -28.45 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -71.69 2.11 -69.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254773712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.467 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds