Wall clock time and date at job start Tue Mar 31 2020 14:30:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46895 * 110.99633 * 2 1
4 4 C 1.50695 * 109.47442 * 293.95514 * 3 2 1
5 5 H 1.08001 * 120.00041 * 359.97438 * 4 3 2
6 6 C 1.37881 * 120.00137 * 180.02562 * 4 3 2
7 7 N 1.31513 * 119.99819 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 119.99930 * 179.97438 * 6 4 3
9 9 H 1.48502 * 109.47115 * 60.00096 * 8 6 4
10 10 H 1.48503 * 109.47314 * 299.99836 * 8 6 4
11 11 H 1.48502 * 109.46762 * 180.02562 * 8 6 4
12 12 C 1.46902 * 110.99811 * 123.95461 * 2 1 3
13 13 H 1.09001 * 110.65108 * 298.13480 * 12 2 1
14 14 C 1.54967 * 110.73304 * 61.31322 * 12 2 1
15 15 C 1.54689 * 104.13255 * 155.70998 * 14 12 2
16 16 C 1.53082 * 106.32417 * 336.74144 * 15 14 12
17 17 C 1.53095 * 115.46510 * 130.26576 * 16 15 14
18 18 N 1.47746 * 85.84268 * 93.84082 * 17 16 15
19 19 C 1.34775 * 134.41367 * 204.01808 * 18 17 16
20 20 O 1.21518 * 119.99463 * 179.97438 * 19 18 17
21 21 O 1.34637 * 120.00274 * 359.97438 * 19 18 17
22 22 C 1.45198 * 116.99784 * 180.02562 * 21 19 18
23 23 C 1.53008 * 109.47091 * 60.00355 * 22 21 19
24 24 C 1.52998 * 109.46910 * 180.02562 * 22 21 19
25 25 C 1.52997 * 109.47548 * 300.00220 * 22 21 19
26 26 C 1.47745 * 91.16838 * 24.01201 * 18 17 16
27 27 C 1.53475 * 107.49219 * 0.09468 * 16 15 14
28 28 H 1.09002 * 109.47228 * 62.80950 * 1 2 3
29 29 H 1.09000 * 109.47146 * 182.81021 * 1 2 3
30 30 H 1.08996 * 109.47245 * 302.80867 * 1 2 3
31 31 H 1.09008 * 109.46894 * 173.95268 * 3 2 1
32 32 H 1.09000 * 109.47386 * 53.95387 * 3 2 1
33 33 H 0.97007 * 120.00130 * 359.97438 * 7 6 4
34 34 H 1.09005 * 110.47298 * 274.54262 * 14 12 2
35 35 H 1.08993 * 110.47879 * 37.16484 * 14 12 2
36 36 H 1.09006 * 110.18593 * 217.45421 * 15 14 12
37 37 H 1.08998 * 109.98303 * 95.92728 * 15 14 12
38 38 H 1.09005 * 113.81311 * 208.07200 * 17 16 15
39 39 H 1.09003 * 113.81502 * 339.60902 * 17 16 15
40 40 H 1.08996 * 109.46904 * 59.99800 * 23 22 21
41 41 H 1.09005 * 109.46595 * 179.97438 * 23 22 21
42 42 H 1.08998 * 109.46939 * 299.99312 * 23 22 21
43 43 H 1.09000 * 109.47632 * 60.00307 * 24 22 21
44 44 H 1.09002 * 109.47559 * 180.02562 * 24 22 21
45 45 H 1.09005 * 109.47144 * 300.00216 * 24 22 21
46 46 H 1.08998 * 109.47451 * 60.00094 * 25 22 21
47 47 H 1.09001 * 109.47217 * 179.97438 * 25 22 21
48 48 H 1.09001 * 109.46992 * 300.00389 * 25 22 21
49 49 H 1.08995 * 113.81441 * 221.75196 * 26 18 17
50 50 H 1.09000 * 113.92125 * 90.22992 * 26 18 17
51 51 H 1.08998 * 110.53299 * 264.44486 * 27 16 15
52 52 H 1.09001 * 110.52950 * 141.68008 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0471 -1.2984
5 1 1.0745 1.5113 -2.0488
6 6 2.0275 3.3492 -1.5288
7 7 2.7135 4.0013 -0.6156
8 14 1.5837 4.1866 -3.1385
9 1 0.1065 4.2237 -3.2863
10 1 2.1755 3.4288 -4.2703
11 1 2.1168 5.5726 -3.1389
12 6 1.9954 -0.7660 1.1376
13 1 1.6841 -0.3167 2.0806
14 6 1.5425 -2.2459 1.0591
15 6 2.6126 -3.0121 1.8720
16 6 3.8674 -2.1352 1.8654
17 6 4.5080 -1.8924 3.2345
18 7 5.3684 -3.0509 2.9175
19 6 6.0618 -3.9406 3.6552
20 8 6.7016 -4.8165 3.1073
21 8 6.0456 -3.8590 4.9990
22 6 6.8156 -4.8502 5.7289
23 6 8.2888 -4.7476 5.3285
24 6 6.6763 -4.5989 7.2316
25 6 6.2928 -6.2489 5.3956
26 6 5.1649 -2.8441 1.4689
27 6 3.5410 -0.8689 1.0620
28 1 -0.3634 0.4696 -0.9141
29 1 -0.3633 -1.0264 0.0504
30 1 -0.3633 0.5568 0.8637
31 1 3.0797 1.3444 0.1083
32 1 1.5610 1.9273 0.8309
33 1 2.9443 3.5663 0.2201
34 1 0.5574 -2.3676 1.5096
35 1 1.5345 -2.5879 0.0242
36 1 2.8247 -3.9730 1.4030
37 1 2.2664 -3.1630 2.8944
38 1 5.0491 -0.9488 3.3061
39 1 3.8324 -2.0622 4.0729
40 1 8.6612 -3.7511 5.5660
41 1 8.8669 -5.4915 5.8769
42 1 8.3877 -4.9270 4.2580
43 1 5.6268 -4.6722 7.5166
44 1 7.2547 -5.3427 7.7796
45 1 7.0485 -3.6023 7.4694
46 1 6.3917 -6.4283 4.3251
47 1 6.8713 -6.9930 5.9432
48 1 5.2433 -6.3220 5.6808
49 1 5.0091 -3.7670 0.9102
50 1 5.9024 -2.1869 1.0083
51 1 3.8668 -0.9778 0.0276
52 1 4.0050 0.0046 1.5201
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001254773713.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:12
Heat of formation + Delta-G solvation = -51.443175 kcal
Electronic energy + Delta-G solvation = -28635.904553 eV
Core-core repulsion = 24829.393743 eV
Total energy + Delta-G solvation = -3806.510810 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.18370 -40.09518 -37.54817 -36.55743 -34.43156 -33.99181 -32.42383 -29.52791
-28.35153 -27.68574 -27.63260 -26.86787 -26.54342 -24.82133 -23.98621 -21.87612
-21.57055 -19.62237 -19.37580 -18.52649 -17.81967 -16.86739 -16.69218 -16.48414
-15.76344 -15.45159 -14.99084 -14.86849 -14.36817 -14.15991 -13.91518 -13.77901
-13.57194 -13.47392 -13.03266 -12.77383 -12.60327 -12.47067 -12.40567 -12.15407
-12.12890 -11.85546 -11.72918 -11.72067 -11.55065 -11.31952 -11.19123 -10.98772
-10.85276 -10.63423 -10.63262 -10.56766 -10.44280 -10.35427 -10.14006 -10.02860
-9.97729 -8.89359 -8.66100 -8.37058 -7.34581 -6.36855 -4.05417 1.85593
2.75809 3.44314 3.46415 3.56769 3.64876 4.13122 4.45211 4.46163
4.50350 4.51645 4.63349 4.67964 4.77994 5.04450 5.13995 5.18319
5.25769 5.28274 5.33417 5.36202 5.39500 5.40706 5.43890 5.47709
5.48891 5.58859 5.63092 5.65853 5.72150 5.77980 5.84418 5.95280
6.00238 6.02993 6.07213 6.09129 6.12880 6.27851 6.31449 6.35329
6.43123 6.54403 6.68652 7.01090 7.09930 7.56003 7.80968 7.98154
8.22260 8.33553 8.58927 8.87467 9.64896 11.02315
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.023853 B = 0.002349 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1173.563918 B =11918.768178 C =12386.407249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.039 3.961
2 N -0.527 5.527
3 C 0.181 3.819
4 C -0.587 4.587
5 H 0.056 0.944
6 C 0.013 3.987
7 N -0.915 5.915
8 Si 1.071 2.929
9 H -0.289 1.289
10 H -0.287 1.287
11 H -0.284 1.284
12 C 0.078 3.922
13 H 0.036 0.964
14 C -0.114 4.114
15 C -0.094 4.094
16 C -0.095 4.095
17 C 0.118 3.882
18 N -0.630 5.630
19 C 0.672 3.328
20 O -0.573 6.573
21 O -0.363 6.363
22 C 0.135 3.865
23 C -0.183 4.183
24 C -0.140 4.140
25 C -0.183 4.183
26 C 0.145 3.855
27 C -0.096 4.096
28 H 0.072 0.928
29 H 0.047 0.953
30 H 0.010 0.990
31 H 0.024 0.976
32 H -0.023 1.023
33 H 0.266 0.734
34 H 0.060 0.940
35 H 0.077 0.923
36 H 0.068 0.932
37 H 0.065 0.935
38 H 0.090 0.910
39 H 0.084 0.916
40 H 0.059 0.941
41 H 0.069 0.931
42 H 0.087 0.913
43 H 0.066 0.934
44 H 0.079 0.921
45 H 0.066 0.934
46 H 0.087 0.913
47 H 0.069 0.931
48 H 0.059 0.941
49 H 0.086 0.914
50 H 0.092 0.908
51 H 0.087 0.913
52 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.299 -17.941 13.298 22.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 N -0.251 5.251
3 C 0.056 3.944
4 C -0.626 4.626
5 H 0.074 0.926
6 C -0.190 4.190
7 N -0.552 5.552
8 Si 0.899 3.101
9 H -0.215 1.215
10 H -0.214 1.214
11 H -0.209 1.209
12 C -0.031 4.031
13 H 0.054 0.946
14 C -0.152 4.152
15 C -0.132 4.132
16 C -0.097 4.097
17 C -0.004 4.004
18 N -0.373 5.373
19 C 0.428 3.572
20 O -0.463 6.463
21 O -0.277 6.277
22 C 0.098 3.902
23 C -0.240 4.240
24 C -0.197 4.197
25 C -0.240 4.240
26 C 0.024 3.976
27 C -0.134 4.134
28 H 0.091 0.909
29 H 0.066 0.934
30 H 0.028 0.972
31 H 0.042 0.958
32 H -0.005 1.005
33 H 0.076 0.924
34 H 0.079 0.921
35 H 0.096 0.904
36 H 0.087 0.913
37 H 0.083 0.917
38 H 0.108 0.892
39 H 0.102 0.898
40 H 0.078 0.922
41 H 0.088 0.912
42 H 0.106 0.894
43 H 0.085 0.915
44 H 0.098 0.902
45 H 0.085 0.915
46 H 0.106 0.894
47 H 0.088 0.912
48 H 0.078 0.922
49 H 0.104 0.896
50 H 0.110 0.890
51 H 0.106 0.894
52 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 5.948 -17.202 12.055 21.832
hybrid contribution -0.279 -1.025 1.788 2.080
sum 5.670 -18.227 13.844 23.580
Atomic orbital electron populations
1.22185 0.88690 0.99084 1.00947 1.62143 1.06937 1.16977 1.39091
1.19858 0.94947 0.82901 0.96707 1.21979 1.38705 0.99662 1.02228
0.92559 1.25826 0.94501 0.94745 1.03918 1.70805 1.36623 1.39908
1.07837 0.83509 0.76028 0.76094 0.74449 1.21534 1.21373 1.20892
1.22579 0.94147 0.93494 0.92875 0.94646 1.22492 0.97270 0.94751
1.00701 1.21849 0.93084 0.97682 1.00542 1.22458 0.94469 0.97381
0.95349 1.23391 0.90536 0.88512 0.97948 1.48855 1.50022 1.29801
1.08584 1.17558 0.77853 0.81199 0.80571 1.90884 1.45962 1.36868
1.72613 1.86320 1.68566 1.55101 1.17759 1.22057 0.90566 0.86745
0.90833 1.22511 0.94211 1.02367 1.04917 1.21853 1.03217 1.03041
0.91614 1.22512 1.01283 0.95100 1.05088 1.23285 0.94805 0.99873
0.79600 1.22219 0.95950 0.94510 1.00756 0.90911 0.93404 0.97168
0.95777 1.00503 0.92384 0.92128 0.90434 0.91345 0.91658 0.89201
0.89779 0.92211 0.91202 0.89414 0.91493 0.90183 0.91482 0.89392
0.91232 0.92225 0.89555 0.89041 0.89414 0.91236
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.75 9.19 60.07 0.55 1.30 16
2 N -0.53 -10.78 4.65 -233.76 -1.09 -11.87 16
3 C 0.18 4.50 3.90 -4.98 -0.02 4.48 16
4 C -0.59 -16.27 8.55 -34.44 -0.29 -16.57 16
5 H 0.06 1.57 7.10 -52.49 -0.37 1.19 16
6 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16
7 N -0.92 -27.43 13.65 55.43 0.76 -26.67 16
8 Si 1.07 25.00 29.90 -169.99 -5.08 19.92 16
9 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16
10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16
11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
12 C 0.08 1.27 2.59 -65.57 -0.17 1.10 16
13 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
14 C -0.11 -1.50 5.26 -24.80 -0.13 -1.63 16
15 C -0.09 -1.05 6.33 -25.80 -0.16 -1.22 16
16 C -0.10 -1.11 1.15 -154.27 -0.18 -1.28 16
17 C 0.12 1.32 8.08 -3.31 -0.03 1.29 16
18 N -0.63 -7.99 3.60 -188.32 -0.68 -8.67 16
19 C 0.67 9.48 8.22 54.05 0.44 9.93 16
20 O -0.57 -9.09 12.61 -19.29 -0.24 -9.34 16
21 O -0.36 -4.63 9.87 -40.32 -0.40 -5.03 16
22 C 0.13 1.37 1.13 -90.62 -0.10 1.27 16
23 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16
24 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16
25 C -0.18 -1.77 8.37 37.16 0.31 -1.46 16
26 C 0.14 1.68 8.07 -3.32 -0.03 1.65 16
27 C -0.10 -1.39 4.59 -25.38 -0.12 -1.51 16
28 H 0.07 1.49 6.94 -51.93 -0.36 1.13 16
29 H 0.05 0.76 6.76 -51.93 -0.35 0.40 16
30 H 0.01 0.19 8.11 -51.93 -0.42 -0.23 16
31 H 0.02 0.62 6.50 -51.92 -0.34 0.28 16
32 H -0.02 -0.60 7.97 -51.93 -0.41 -1.02 16
33 H 0.27 7.91 7.22 -40.82 -0.29 7.61 16
34 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16
35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
36 H 0.07 0.74 7.73 -51.93 -0.40 0.34 16
37 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16
38 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16
39 H 0.08 0.87 7.85 -51.93 -0.41 0.47 16
40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
42 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16
43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16
45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
46 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16
47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16
49 H 0.09 0.97 7.85 -51.93 -0.41 0.56 16
50 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16
51 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16
52 H 0.07 1.04 7.42 -51.93 -0.39 0.66 16
LS Contribution 399.96 15.07 6.03 6.03
Total: -1.00 -31.89 399.96 -9.51 -41.40
By element:
Atomic # 1 Polarization: 8.23 SS G_CDS: -9.43 Total: -1.20 kcal
Atomic # 6 Polarization: -5.19 SS G_CDS: 0.62 Total: -4.56 kcal
Atomic # 7 Polarization: -46.20 SS G_CDS: -1.01 Total: -47.21 kcal
Atomic # 8 Polarization: -13.73 SS G_CDS: -0.64 Total: -14.37 kcal
Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.92 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -31.89 -9.51 -41.40 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254773713.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.045 kcal
(2) G-P(sol) polarization free energy of solvation -31.887 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.932 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.443 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds