Wall clock time and date at job start Tue Mar 31 2020 14:30:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46895 * 110.99633 * 2 1
4 4 C 1.50695 * 109.47442 * 293.95514 * 3 2 1
5 5 H 1.08001 * 120.00041 * 359.97438 * 4 3 2
6 6 C 1.37881 * 120.00137 * 180.02562 * 4 3 2
7 7 N 1.31513 * 119.99819 * 0.02562 * 6 4 3
8 8 Si 1.86800 * 119.99930 * 179.97438 * 6 4 3
9 9 H 1.48502 * 109.47115 * 60.00096 * 8 6 4
10 10 H 1.48503 * 109.47314 * 299.99836 * 8 6 4
11 11 H 1.48502 * 109.46762 * 180.02562 * 8 6 4
12 12 C 1.46902 * 110.99811 * 123.95461 * 2 1 3
13 13 H 1.09001 * 110.65108 * 298.13480 * 12 2 1
14 14 C 1.54967 * 110.73304 * 61.31322 * 12 2 1
15 15 C 1.54689 * 104.13255 * 155.70998 * 14 12 2
16 16 C 1.53082 * 106.32417 * 336.74144 * 15 14 12
17 17 C 1.53095 * 115.46510 * 130.26576 * 16 15 14
18 18 N 1.47746 * 85.84268 * 93.84082 * 17 16 15
19 19 C 1.34775 * 134.41367 * 204.01808 * 18 17 16
20 20 O 1.21518 * 119.99463 * 179.97438 * 19 18 17
21 21 O 1.34637 * 120.00274 * 359.97438 * 19 18 17
22 22 C 1.45198 * 116.99784 * 180.02562 * 21 19 18
23 23 C 1.53008 * 109.47091 * 60.00355 * 22 21 19
24 24 C 1.52998 * 109.46910 * 180.02562 * 22 21 19
25 25 C 1.52997 * 109.47548 * 300.00220 * 22 21 19
26 26 C 1.47745 * 91.16838 * 24.01201 * 18 17 16
27 27 C 1.53475 * 107.49219 * 0.09468 * 16 15 14
28 28 H 1.09002 * 109.47228 * 62.80950 * 1 2 3
29 29 H 1.09000 * 109.47146 * 182.81021 * 1 2 3
30 30 H 1.08996 * 109.47245 * 302.80867 * 1 2 3
31 31 H 1.09008 * 109.46894 * 173.95268 * 3 2 1
32 32 H 1.09000 * 109.47386 * 53.95387 * 3 2 1
33 33 H 0.97007 * 120.00130 * 359.97438 * 7 6 4
34 34 H 1.09005 * 110.47298 * 274.54262 * 14 12 2
35 35 H 1.08993 * 110.47879 * 37.16484 * 14 12 2
36 36 H 1.09006 * 110.18593 * 217.45421 * 15 14 12
37 37 H 1.08998 * 109.98303 * 95.92728 * 15 14 12
38 38 H 1.09005 * 113.81311 * 208.07200 * 17 16 15
39 39 H 1.09003 * 113.81502 * 339.60902 * 17 16 15
40 40 H 1.08996 * 109.46904 * 59.99800 * 23 22 21
41 41 H 1.09005 * 109.46595 * 179.97438 * 23 22 21
42 42 H 1.08998 * 109.46939 * 299.99312 * 23 22 21
43 43 H 1.09000 * 109.47632 * 60.00307 * 24 22 21
44 44 H 1.09002 * 109.47559 * 180.02562 * 24 22 21
45 45 H 1.09005 * 109.47144 * 300.00216 * 24 22 21
46 46 H 1.08998 * 109.47451 * 60.00094 * 25 22 21
47 47 H 1.09001 * 109.47217 * 179.97438 * 25 22 21
48 48 H 1.09001 * 109.46992 * 300.00389 * 25 22 21
49 49 H 1.08995 * 113.81441 * 221.75196 * 26 18 17
50 50 H 1.09000 * 113.92125 * 90.22992 * 26 18 17
51 51 H 1.08998 * 110.53299 * 264.44486 * 27 16 15
52 52 H 1.09001 * 110.52950 * 141.68008 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0471 -1.2984
5 1 1.0745 1.5113 -2.0488
6 6 2.0275 3.3492 -1.5288
7 7 2.7135 4.0013 -0.6156
8 14 1.5837 4.1866 -3.1385
9 1 0.1065 4.2237 -3.2863
10 1 2.1755 3.4288 -4.2703
11 1 2.1168 5.5726 -3.1389
12 6 1.9954 -0.7660 1.1376
13 1 1.6841 -0.3167 2.0806
14 6 1.5425 -2.2459 1.0591
15 6 2.6126 -3.0121 1.8720
16 6 3.8674 -2.1352 1.8654
17 6 4.5080 -1.8924 3.2345
18 7 5.3684 -3.0509 2.9175
19 6 6.0618 -3.9406 3.6552
20 8 6.7016 -4.8165 3.1073
21 8 6.0456 -3.8590 4.9990
22 6 6.8156 -4.8502 5.7289
23 6 8.2888 -4.7476 5.3285
24 6 6.6763 -4.5989 7.2316
25 6 6.2928 -6.2489 5.3956
26 6 5.1649 -2.8441 1.4689
27 6 3.5410 -0.8689 1.0620
28 1 -0.3634 0.4696 -0.9141
29 1 -0.3633 -1.0264 0.0504
30 1 -0.3633 0.5568 0.8637
31 1 3.0797 1.3444 0.1083
32 1 1.5610 1.9273 0.8309
33 1 2.9443 3.5663 0.2201
34 1 0.5574 -2.3676 1.5096
35 1 1.5345 -2.5879 0.0242
36 1 2.8247 -3.9730 1.4030
37 1 2.2664 -3.1630 2.8944
38 1 5.0491 -0.9488 3.3061
39 1 3.8324 -2.0622 4.0729
40 1 8.6612 -3.7511 5.5660
41 1 8.8669 -5.4915 5.8769
42 1 8.3877 -4.9270 4.2580
43 1 5.6268 -4.6722 7.5166
44 1 7.2547 -5.3427 7.7796
45 1 7.0485 -3.6023 7.4694
46 1 6.3917 -6.4283 4.3251
47 1 6.8713 -6.9930 5.9432
48 1 5.2433 -6.3220 5.6808
49 1 5.0091 -3.7670 0.9102
50 1 5.9024 -2.1869 1.0083
51 1 3.8668 -0.9778 0.0276
52 1 4.0050 0.0046 1.5201
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001254773713.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:30:11
Heat of formation + Delta-G solvation = -70.784862 kcal
Electronic energy + Delta-G solvation = -28636.743272 eV
Core-core repulsion = 24829.393743 eV
Total energy + Delta-G solvation = -3807.349529 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.18292 -41.08996 -38.87288 -37.66819 -35.81639 -35.02967 -34.24842 -30.64727
-29.56859 -28.72307 -28.39119 -28.32541 -27.47356 -26.20988 -25.57596 -23.38043
-22.69026 -20.83773 -20.47633 -19.55674 -18.85803 -18.71584 -17.76843 -17.50851
-16.99186 -16.62863 -16.17222 -15.77066 -15.66761 -15.37827 -15.21600 -15.03655
-15.00995 -14.55768 -14.42667 -13.96126 -13.66678 -13.42171 -13.36317 -13.19057
-13.08256 -12.99245 -12.89191 -12.87253 -12.72445 -12.57601 -12.46945 -12.39260
-12.21604 -12.11972 -11.92388 -11.82718 -11.62574 -11.48142 -11.42173 -11.36901
-11.04308 -10.70699 -10.52501 -9.88779 -9.05859 -8.63233 -6.33318 0.92956
1.55257 1.63252 1.71303 1.82466 2.58272 2.67016 3.10572 3.18713
3.31685 3.46063 3.65149 3.73479 3.77538 3.92270 4.00594 4.17197
4.24750 4.30512 4.40592 4.43085 4.46298 4.53519 4.57200 4.58980
4.59471 4.61879 4.69706 4.73484 4.74635 4.80223 4.84974 4.88134
4.92215 4.94385 4.97545 5.06407 5.08689 5.09714 5.18997 5.24186
5.25184 5.30118 5.30531 5.38794 5.45656 5.86922 6.04870 6.44677
6.49384 6.56012 6.73605 7.19883 7.46242 8.75789
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.023853 B = 0.002349 C = 0.002260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1173.563918 B =11918.768178 C =12386.407249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 N -0.536 5.536
3 C 0.194 3.806
4 C -0.597 4.597
5 H 0.053 0.947
6 C -0.038 4.038
7 N -0.940 5.940
8 Si 1.118 2.882
9 H -0.271 1.271
10 H -0.270 1.270
11 H -0.286 1.286
12 C 0.071 3.929
13 H 0.031 0.969
14 C -0.103 4.103
15 C -0.085 4.085
16 C -0.082 4.082
17 C 0.121 3.879
18 N -0.633 5.633
19 C 0.666 3.334
20 O -0.596 6.596
21 O -0.369 6.369
22 C 0.121 3.879
23 C -0.179 4.179
24 C -0.135 4.135
25 C -0.177 4.177
26 C 0.143 3.857
27 C -0.091 4.091
28 H 0.052 0.948
29 H 0.084 0.916
30 H 0.004 0.996
31 H 0.012 0.988
32 H -0.050 1.050
33 H 0.254 0.746
34 H 0.075 0.925
35 H 0.072 0.928
36 H 0.079 0.921
37 H 0.079 0.921
38 H 0.094 0.906
39 H 0.097 0.903
40 H 0.058 0.942
41 H 0.093 0.907
42 H 0.059 0.941
43 H 0.069 0.931
44 H 0.104 0.896
45 H 0.066 0.934
46 H 0.059 0.941
47 H 0.092 0.908
48 H 0.061 0.939
49 H 0.091 0.909
50 H 0.095 0.905
51 H 0.072 0.928
52 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.827 -19.561 14.049 24.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.106 4.106
2 N -0.259 5.259
3 C 0.068 3.932
4 C -0.636 4.636
5 H 0.071 0.929
6 C -0.235 4.235
7 N -0.578 5.578
8 Si 0.939 3.061
9 H -0.196 1.196
10 H -0.196 1.196
11 H -0.211 1.211
12 C -0.038 4.038
13 H 0.049 0.951
14 C -0.141 4.141
15 C -0.123 4.123
16 C -0.084 4.084
17 C -0.001 4.001
18 N -0.375 5.375
19 C 0.423 3.577
20 O -0.488 6.488
21 O -0.284 6.284
22 C 0.085 3.915
23 C -0.236 4.236
24 C -0.192 4.192
25 C -0.235 4.235
26 C 0.022 3.978
27 C -0.130 4.130
28 H 0.071 0.929
29 H 0.103 0.897
30 H 0.023 0.977
31 H 0.030 0.970
32 H -0.033 1.033
33 H 0.063 0.937
34 H 0.093 0.907
35 H 0.091 0.909
36 H 0.097 0.903
37 H 0.097 0.903
38 H 0.112 0.888
39 H 0.115 0.885
40 H 0.077 0.923
41 H 0.112 0.888
42 H 0.078 0.922
43 H 0.088 0.912
44 H 0.123 0.877
45 H 0.085 0.915
46 H 0.078 0.922
47 H 0.111 0.889
48 H 0.080 0.920
49 H 0.110 0.890
50 H 0.113 0.887
51 H 0.091 0.909
52 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 5.462 -18.850 12.826 23.445
hybrid contribution -0.118 -0.569 1.605 1.707
sum 5.344 -19.419 14.431 24.777
Atomic orbital electron populations
1.22186 0.87727 1.01082 0.99630 1.62075 1.07922 1.14394 1.41551
1.19543 0.94056 0.85102 0.94519 1.22325 1.38113 1.00019 1.03102
0.92888 1.27310 0.93814 0.95942 1.06423 1.70930 1.38459 1.40278
1.08106 0.82918 0.76925 0.75092 0.71150 1.19584 1.19565 1.21110
1.22753 0.95131 0.94864 0.91061 0.95066 1.22419 0.98606 0.92077
1.01027 1.21812 0.91849 0.97547 1.01107 1.22287 0.94912 0.95946
0.95216 1.23462 0.90405 0.88262 0.97943 1.48944 1.49802 1.29822
1.08946 1.17729 0.77764 0.81123 0.81061 1.90875 1.46937 1.37848
1.73160 1.86329 1.68987 1.56044 1.17022 1.22462 0.90324 0.86529
0.92152 1.22465 0.94670 1.03107 1.03353 1.21879 1.03923 1.03898
0.89462 1.22456 1.01917 0.95558 1.03533 1.23354 0.94770 1.00170
0.79468 1.22104 0.94878 0.95667 1.00304 0.92917 0.89718 0.97733
0.97034 1.03287 0.93687 0.90659 0.90882 0.90255 0.90283 0.88841
0.88489 0.92278 0.88785 0.92232 0.91225 0.87697 0.91482 0.92158
0.88878 0.91969 0.89018 0.88729 0.90943 0.92432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.57 9.19 127.69 1.17 2.74 16
2 N -0.54 -21.97 4.65 -893.47 -4.15 -26.13 16
3 C 0.19 9.95 3.90 85.56 0.33 10.28 16
4 C -0.60 -33.65 8.55 25.60 0.22 -33.43 16
5 H 0.05 2.97 7.10 -2.91 -0.02 2.95 16
6 C -0.04 -2.16 5.46 84.66 0.46 -1.69 16
7 N -0.94 -57.58 13.65 21.45 0.29 -57.29 16
8 Si 1.12 50.12 29.90 68.60 2.05 52.17 16
9 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16
11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
12 C 0.07 2.24 2.59 46.30 0.12 2.36 16
13 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
14 C -0.10 -2.48 5.26 31.84 0.17 -2.31 16
15 C -0.09 -1.71 6.33 31.20 0.20 -1.51 16
16 C -0.08 -1.81 1.15 -51.89 -0.06 -1.87 16
17 C 0.12 2.55 8.08 86.17 0.70 3.24 16
18 N -0.63 -15.48 3.60 -980.11 -3.53 -19.01 16
19 C 0.67 18.48 8.22 129.79 1.07 19.55 16
20 O -0.60 -19.02 12.61 19.78 0.25 -18.77 16
21 O -0.37 -9.08 9.87 -55.46 -0.55 -9.63 16
22 C 0.12 2.29 1.13 -10.79 -0.01 2.28 16
23 C -0.18 -3.35 8.37 71.98 0.60 -2.74 16
24 C -0.13 -1.65 8.85 71.98 0.64 -1.02 16
25 C -0.18 -3.20 8.37 71.98 0.60 -2.60 16
26 C 0.14 3.19 8.07 86.16 0.70 3.88 16
27 C -0.09 -2.65 4.59 31.47 0.14 -2.50 16
28 H 0.05 2.15 6.94 -2.39 -0.02 2.13 16
29 H 0.08 2.50 6.76 -2.39 -0.02 2.49 16
30 H 0.00 0.16 8.11 -2.39 -0.02 0.14 16
31 H 0.01 0.62 6.50 -2.38 -0.02 0.61 16
32 H -0.05 -2.81 7.97 -2.39 -0.02 -2.83 16
33 H 0.25 15.69 7.22 -92.70 -0.67 15.02 16
34 H 0.07 1.61 7.82 -2.38 -0.02 1.59 16
35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
36 H 0.08 1.48 7.73 -2.38 -0.02 1.46 16
37 H 0.08 1.42 7.73 -2.39 -0.02 1.40 16
38 H 0.09 1.91 7.93 -2.38 -0.02 1.90 16
39 H 0.10 1.82 7.85 -2.39 -0.02 1.80 16
40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16
41 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16
42 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16
43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
44 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16
45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16
46 H 0.06 1.45 5.88 -2.39 -0.01 1.44 16
47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16
48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16
49 H 0.09 1.96 7.85 -2.39 -0.02 1.94 16
50 H 0.09 2.05 8.13 -2.39 -0.02 2.03 16
51 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16
52 H 0.06 1.79 7.42 -2.39 -0.02 1.77 16
Total: -1.00 -70.34 399.96 2.38 -67.96
By element:
Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal
Atomic # 6 Polarization: -12.39 SS G_CDS: 7.05 Total: -5.34 kcal
Atomic # 7 Polarization: -95.03 SS G_CDS: -7.39 Total: -102.42 kcal
Atomic # 8 Polarization: -28.10 SS G_CDS: -0.30 Total: -28.40 kcal
Atomic # 14 Polarization: 50.12 SS G_CDS: 2.05 Total: 52.17 kcal
Total: -70.34 2.38 -67.96 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001254773713.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.825 kcal
(2) G-P(sol) polarization free energy of solvation -70.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.960 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds