Wall clock time and date at job start Tue Mar 31 2020 15:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99926 * 2 1 4 4 C 1.50706 * 109.47370 * 293.95354 * 3 2 1 5 5 H 1.07997 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99905 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00313 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99702 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46920 * 90.00466 * 8 6 4 10 10 H 1.48505 * 109.47198 * 210.00182 * 8 6 4 11 11 H 1.48493 * 109.47358 * 330.00435 * 8 6 4 12 12 C 1.46897 * 111.00154 * 123.95661 * 2 1 3 13 13 H 1.09006 * 109.88599 * 295.00208 * 12 2 1 14 14 C 1.53476 * 110.03315 * 173.86798 * 12 2 1 15 15 C 1.53679 * 107.42437 * 240.31407 * 14 12 2 16 16 H 1.08995 * 112.77036 * 105.72151 * 15 14 12 17 17 C 1.53906 * 109.01155 * 231.24905 * 15 14 12 18 18 N 1.46702 * 107.82551 * 94.21827 * 17 15 14 19 19 C 1.34783 * 125.34926 * 179.86287 * 18 17 15 20 20 O 1.21507 * 120.00044 * 0.02562 * 19 18 17 21 21 O 1.34642 * 119.99971 * 180.02562 * 19 18 17 22 22 C 1.45198 * 116.99962 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47088 * 60.00160 * 22 21 19 24 24 C 1.53006 * 109.46975 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46972 * 299.99653 * 22 21 19 26 26 C 1.46850 * 109.29990 * 359.89020 * 18 17 15 27 27 C 1.53929 * 106.44513 * 18.63960 * 26 18 17 28 28 H 1.08996 * 112.54875 * 92.67986 * 27 26 18 29 29 C 1.53605 * 109.89612 * 56.04352 * 12 2 1 30 30 H 1.08997 * 109.47202 * 296.04445 * 1 2 3 31 31 H 1.09000 * 109.47242 * 56.04374 * 1 2 3 32 32 H 1.08997 * 109.47393 * 176.04460 * 1 2 3 33 33 H 1.09001 * 109.47426 * 53.95710 * 3 2 1 34 34 H 1.08997 * 109.47388 * 173.95463 * 3 2 1 35 35 H 0.97002 * 120.00301 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.85280 * 120.85492 * 14 12 2 37 37 H 1.08989 * 109.85923 * 359.78056 * 14 12 2 38 38 H 1.09000 * 109.78943 * 213.80506 * 17 15 14 39 39 H 1.08996 * 109.78976 * 334.63237 * 17 15 14 40 40 H 1.08999 * 109.47372 * 60.00410 * 23 22 21 41 41 H 1.09004 * 109.47019 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47043 * 299.99877 * 23 22 21 43 43 H 1.09005 * 109.46985 * 60.00079 * 24 22 21 44 44 H 1.08994 * 109.46969 * 179.97438 * 24 22 21 45 45 H 1.08994 * 109.46803 * 300.00180 * 24 22 21 46 46 H 1.09003 * 109.46923 * 60.00267 * 25 22 21 47 47 H 1.09004 * 109.47187 * 179.97438 * 25 22 21 48 48 H 1.08999 * 109.47325 * 300.00219 * 25 22 21 49 49 H 1.08999 * 110.06108 * 137.88937 * 26 18 17 50 50 H 1.09003 * 110.05349 * 259.39426 * 26 18 17 51 51 H 1.08996 * 110.12098 * 18.47042 * 29 12 2 52 52 H 1.08994 * 110.12404 * 256.79776 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5817 4.1873 -3.1376 9 1 0.2693 4.8674 -2.9952 10 1 2.6237 5.1888 -3.4790 11 1 1.4983 3.1718 -4.2179 12 6 1.9955 -0.7660 1.1375 13 1 1.7239 -0.2755 2.0723 14 6 3.5223 -0.8809 1.0324 15 6 3.8667 -2.3764 0.9506 16 1 4.1625 -2.6869 -0.0515 17 6 4.9392 -2.7024 2.0052 18 7 4.2529 -3.1766 3.2119 19 6 4.8583 -3.5614 4.3530 20 8 6.0699 -3.5306 4.4382 21 8 4.1203 -3.9801 5.3985 22 6 4.8394 -4.3789 6.5952 23 6 5.6571 -3.1956 7.1169 24 6 3.8407 -4.8211 7.6667 25 6 5.7779 -5.5406 6.2630 26 6 2.8027 -3.1667 2.9811 27 6 2.6046 -3.1243 1.4552 28 1 2.5017 -4.1179 1.0192 29 6 1.4296 -2.1938 1.1129 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5611 1.9273 0.8309 34 1 3.0797 1.3444 0.1082 35 1 2.9865 4.9180 -0.7769 36 1 3.9882 -0.4414 1.9145 37 1 3.8710 -0.3710 0.1345 38 1 5.6030 -3.4804 1.6282 39 1 5.5143 -1.8057 2.2360 40 1 4.9885 -2.3680 7.3536 41 1 6.1973 -3.4951 8.0150 42 1 6.3686 -2.8810 6.3534 43 1 3.2584 -5.6642 7.2948 44 1 4.3805 -5.1209 8.5649 45 1 3.1717 -3.9938 7.9034 46 1 6.4894 -5.2260 5.4995 47 1 6.3181 -5.8397 7.1613 48 1 5.1953 -6.3835 5.8914 49 1 2.3526 -4.0706 3.3916 50 1 2.3570 -2.2845 3.4407 51 1 1.0432 -2.4270 0.1208 52 1 0.6402 -2.2972 1.8573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254898780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:43 Heat of formation + Delta-G solvation = -77.962610 kcal Electronic energy + Delta-G solvation = -28984.766557 eV Core-core repulsion = 25177.105778 eV Total energy + Delta-G solvation = -3807.660779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04909 -39.88819 -37.36477 -36.26172 -34.36262 -33.50738 -32.28126 -30.76187 -28.63623 -27.65261 -27.58474 -27.49415 -25.85536 -24.72030 -23.70015 -21.72857 -21.25822 -19.59294 -19.42592 -18.95993 -17.86188 -16.92282 -16.56192 -16.37161 -15.85166 -15.17810 -14.85981 -14.71588 -14.58589 -14.10057 -13.89878 -13.58148 -13.45497 -13.29665 -12.89583 -12.78229 -12.73130 -12.49647 -12.36325 -12.11393 -12.06353 -11.93643 -11.66484 -11.55177 -11.38117 -11.22256 -11.07497 -10.82339 -10.81108 -10.76256 -10.55936 -10.49902 -10.45455 -10.38745 -10.21740 -10.07079 -9.72480 -9.16134 -8.75019 -8.43098 -7.23090 -6.02644 -4.03828 2.01283 2.77827 3.31255 3.37800 3.41792 3.78665 4.33808 4.41573 4.48708 4.51911 4.53520 4.67768 4.71978 4.94874 5.17344 5.21751 5.22202 5.30082 5.32526 5.33184 5.38623 5.44536 5.50422 5.54581 5.60088 5.63672 5.71805 5.74501 5.75765 5.86624 5.92658 6.00871 6.06373 6.09514 6.12867 6.15044 6.20330 6.21980 6.34921 6.36184 6.46330 6.53551 6.68072 6.77233 7.31127 7.35864 7.42635 7.81408 8.11166 8.20681 8.26997 8.56714 9.04091 9.60370 11.08180 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002493 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.138387 B =11227.852251 C =11542.297933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.189 3.811 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.084 3.916 13 H 0.029 0.971 14 C -0.111 4.111 15 C -0.092 4.092 16 H 0.104 0.896 17 C 0.130 3.870 18 N -0.598 5.598 19 C 0.666 3.334 20 O -0.570 6.570 21 O -0.362 6.362 22 C 0.135 3.865 23 C -0.184 4.184 24 C -0.140 4.140 25 C -0.183 4.183 26 C 0.111 3.889 27 C -0.097 4.097 28 H 0.092 0.908 29 C -0.106 4.106 30 H 0.008 0.992 31 H 0.073 0.927 32 H 0.047 0.953 33 H -0.012 1.012 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -19.376 13.125 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.064 3.936 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.026 4.026 13 H 0.047 0.953 14 C -0.149 4.149 15 C -0.111 4.111 16 H 0.122 0.878 17 C 0.009 3.991 18 N -0.338 5.338 19 C 0.421 3.579 20 O -0.460 6.460 21 O -0.277 6.277 22 C 0.098 3.902 23 C -0.241 4.241 24 C -0.197 4.197 25 C -0.240 4.240 26 C -0.012 4.012 27 C -0.116 4.116 28 H 0.110 0.890 29 C -0.144 4.144 30 H 0.027 0.973 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.006 0.994 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.085 0.915 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.089 0.911 51 H 0.101 0.899 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.376 -19.451 12.920 23.472 hybrid contribution -0.456 1.085 0.081 1.180 sum 1.920 -18.366 13.001 22.584 Atomic orbital electron populations 1.22227 0.89099 0.99562 1.00433 1.62330 1.06672 1.17727 1.39114 1.19772 0.95784 0.81570 0.96431 1.21164 1.34714 0.96879 1.01744 0.91903 1.24986 0.95342 0.97394 0.96921 1.69957 1.38387 1.11414 1.34074 0.86523 0.77972 0.79255 0.83818 1.20809 1.21285 1.19779 1.21957 0.94229 0.93432 0.92952 0.95283 1.22191 0.95600 0.93882 1.03228 1.22621 0.93598 0.96711 0.98161 0.87804 1.21993 0.94967 0.99558 0.82553 1.46975 1.08347 1.66992 1.11500 1.17478 0.83439 0.76915 0.80038 1.90889 1.12578 1.59952 1.82604 1.86312 1.40732 1.78061 1.22571 1.22056 0.91988 0.94810 0.81300 1.22517 1.01270 0.97554 1.02754 1.21852 0.98969 1.02275 0.96620 1.22512 1.00457 0.97252 1.03754 1.22150 0.80209 1.02193 0.96604 1.22604 0.95950 0.99577 0.93467 0.89012 1.22112 0.96181 0.93836 1.02289 0.97317 0.90806 0.93429 0.99449 0.94715 0.92954 0.92115 0.89200 0.91469 0.90748 0.92115 0.91225 0.89336 0.91533 0.90201 0.91430 0.89371 0.91233 0.92269 0.90829 0.91127 0.89873 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.04 60.06 0.54 1.20 16 2 N -0.53 -10.93 4.49 -235.66 -1.06 -11.99 16 3 C 0.19 4.80 4.48 -4.98 -0.02 4.78 16 4 C -0.51 -13.96 8.46 -34.44 -0.29 -14.25 16 5 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.08 1.39 2.39 -67.15 -0.16 1.23 16 13 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 14 C -0.11 -1.76 5.17 -26.13 -0.14 -1.89 16 15 C -0.09 -1.14 3.94 -88.66 -0.35 -1.48 16 16 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.13 1.64 6.23 -3.46 -0.02 1.62 16 18 N -0.60 -7.85 3.32 -177.90 -0.59 -8.44 16 19 C 0.67 9.50 7.91 54.06 0.43 9.93 16 20 O -0.57 -9.12 12.19 -19.28 -0.23 -9.35 16 21 O -0.36 -4.60 9.45 -40.33 -0.38 -4.98 16 22 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 23 C -0.18 -1.89 8.37 37.16 0.31 -1.58 16 24 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 25 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 26 C 0.11 1.28 6.07 -3.37 -0.02 1.25 16 27 C -0.10 -1.08 4.00 -88.62 -0.35 -1.43 16 28 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 29 C -0.11 -1.36 4.61 -26.04 -0.12 -1.48 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 1.49 6.76 -51.93 -0.35 1.14 16 32 H 0.05 0.74 6.51 -51.93 -0.34 0.40 16 33 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 34 H 0.03 0.93 6.25 -51.93 -0.32 0.60 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 36 H 0.06 0.98 7.29 -51.93 -0.38 0.60 16 37 H 0.09 1.65 6.60 -51.94 -0.34 1.31 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.01 7.42 -51.93 -0.39 0.62 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 50 H 0.07 0.87 7.59 -51.93 -0.39 0.47 16 51 H 0.08 1.11 7.08 -51.93 -0.37 0.74 16 52 H 0.06 0.72 7.98 -51.93 -0.41 0.31 16 LS Contribution 392.69 15.07 5.92 5.92 Total: -1.00 -30.98 392.69 -9.72 -40.69 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -9.33 Total: -0.95 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 0.25 Total: -1.53 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.91 Total: -46.23 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.62 Total: -14.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.98 -9.72 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254898780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.268 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds