Wall clock time and date at job start Tue Mar 31 2020 15:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46895 * 110.99926 * 2 1 4 4 C 1.50706 * 109.47370 * 293.95354 * 3 2 1 5 5 H 1.07997 * 119.99807 * 0.02562 * 4 3 2 6 6 C 1.37871 * 119.99905 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00313 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99702 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46920 * 90.00466 * 8 6 4 10 10 H 1.48505 * 109.47198 * 210.00182 * 8 6 4 11 11 H 1.48493 * 109.47358 * 330.00435 * 8 6 4 12 12 C 1.46897 * 111.00154 * 123.95661 * 2 1 3 13 13 H 1.09006 * 109.88599 * 295.00208 * 12 2 1 14 14 C 1.53476 * 110.03315 * 173.86798 * 12 2 1 15 15 C 1.53679 * 107.42437 * 240.31407 * 14 12 2 16 16 H 1.08995 * 112.77036 * 105.72151 * 15 14 12 17 17 C 1.53906 * 109.01155 * 231.24905 * 15 14 12 18 18 N 1.46702 * 107.82551 * 94.21827 * 17 15 14 19 19 C 1.34783 * 125.34926 * 179.86287 * 18 17 15 20 20 O 1.21507 * 120.00044 * 0.02562 * 19 18 17 21 21 O 1.34642 * 119.99971 * 180.02562 * 19 18 17 22 22 C 1.45198 * 116.99962 * 180.02562 * 21 19 18 23 23 C 1.52996 * 109.47088 * 60.00160 * 22 21 19 24 24 C 1.53006 * 109.46975 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.46972 * 299.99653 * 22 21 19 26 26 C 1.46850 * 109.29990 * 359.89020 * 18 17 15 27 27 C 1.53929 * 106.44513 * 18.63960 * 26 18 17 28 28 H 1.08996 * 112.54875 * 92.67986 * 27 26 18 29 29 C 1.53605 * 109.89612 * 56.04352 * 12 2 1 30 30 H 1.08997 * 109.47202 * 296.04445 * 1 2 3 31 31 H 1.09000 * 109.47242 * 56.04374 * 1 2 3 32 32 H 1.08997 * 109.47393 * 176.04460 * 1 2 3 33 33 H 1.09001 * 109.47426 * 53.95710 * 3 2 1 34 34 H 1.08997 * 109.47388 * 173.95463 * 3 2 1 35 35 H 0.97002 * 120.00301 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.85280 * 120.85492 * 14 12 2 37 37 H 1.08989 * 109.85923 * 359.78056 * 14 12 2 38 38 H 1.09000 * 109.78943 * 213.80506 * 17 15 14 39 39 H 1.08996 * 109.78976 * 334.63237 * 17 15 14 40 40 H 1.08999 * 109.47372 * 60.00410 * 23 22 21 41 41 H 1.09004 * 109.47019 * 180.02562 * 23 22 21 42 42 H 1.09003 * 109.47043 * 299.99877 * 23 22 21 43 43 H 1.09005 * 109.46985 * 60.00079 * 24 22 21 44 44 H 1.08994 * 109.46969 * 179.97438 * 24 22 21 45 45 H 1.08994 * 109.46803 * 300.00180 * 24 22 21 46 46 H 1.09003 * 109.46923 * 60.00267 * 25 22 21 47 47 H 1.09004 * 109.47187 * 179.97438 * 25 22 21 48 48 H 1.08999 * 109.47325 * 300.00219 * 25 22 21 49 49 H 1.08999 * 110.06108 * 137.88937 * 26 18 17 50 50 H 1.09003 * 110.05349 * 259.39426 * 26 18 17 51 51 H 1.08996 * 110.12098 * 18.47042 * 29 12 2 52 52 H 1.08994 * 110.12404 * 256.79776 * 29 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 -1.2985 5 1 1.0739 1.5115 -2.0485 6 6 2.0267 3.3495 -1.5284 7 7 2.7119 4.0019 -0.6149 8 14 1.5817 4.1873 -3.1376 9 1 0.2693 4.8674 -2.9952 10 1 2.6237 5.1888 -3.4790 11 1 1.4983 3.1718 -4.2179 12 6 1.9955 -0.7660 1.1375 13 1 1.7239 -0.2755 2.0723 14 6 3.5223 -0.8809 1.0324 15 6 3.8667 -2.3764 0.9506 16 1 4.1625 -2.6869 -0.0515 17 6 4.9392 -2.7024 2.0052 18 7 4.2529 -3.1766 3.2119 19 6 4.8583 -3.5614 4.3530 20 8 6.0699 -3.5306 4.4382 21 8 4.1203 -3.9801 5.3985 22 6 4.8394 -4.3789 6.5952 23 6 5.6571 -3.1956 7.1169 24 6 3.8407 -4.8211 7.6667 25 6 5.7779 -5.5406 6.2630 26 6 2.8027 -3.1667 2.9811 27 6 2.6046 -3.1243 1.4552 28 1 2.5017 -4.1179 1.0192 29 6 1.4296 -2.1938 1.1129 30 1 -0.3633 0.4512 0.9233 31 1 -0.3634 0.5740 -0.8524 32 1 -0.3634 -1.0252 -0.0709 33 1 1.5611 1.9273 0.8309 34 1 3.0797 1.3444 0.1082 35 1 2.9865 4.9180 -0.7769 36 1 3.9882 -0.4414 1.9145 37 1 3.8710 -0.3710 0.1345 38 1 5.6030 -3.4804 1.6282 39 1 5.5143 -1.8057 2.2360 40 1 4.9885 -2.3680 7.3536 41 1 6.1973 -3.4951 8.0150 42 1 6.3686 -2.8810 6.3534 43 1 3.2584 -5.6642 7.2948 44 1 4.3805 -5.1209 8.5649 45 1 3.1717 -3.9938 7.9034 46 1 6.4894 -5.2260 5.4995 47 1 6.3181 -5.8397 7.1613 48 1 5.1953 -6.3835 5.8914 49 1 2.3526 -4.0706 3.3916 50 1 2.3570 -2.2845 3.4407 51 1 1.0432 -2.4270 0.1208 52 1 0.6402 -2.2972 1.8573 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001254898780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:42 Heat of formation + Delta-G solvation = -96.777831 kcal Electronic energy + Delta-G solvation = -28985.582446 eV Core-core repulsion = 25177.105778 eV Total energy + Delta-G solvation = -3808.476668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.07423 -40.96789 -38.57452 -37.53955 -35.47309 -34.86452 -34.03667 -31.85420 -30.01415 -29.20555 -28.37078 -28.29301 -27.20242 -26.15309 -25.04573 -23.23003 -22.41620 -20.63613 -20.45593 -20.27883 -18.90443 -18.51405 -17.88920 -17.51574 -17.08700 -16.65849 -16.25154 -15.95127 -15.62630 -15.25231 -15.06918 -14.95141 -14.67582 -14.43002 -14.24231 -13.97445 -13.79979 -13.56447 -13.34015 -13.19914 -13.09107 -12.89671 -12.88768 -12.86348 -12.69180 -12.52667 -12.46883 -12.35942 -12.24312 -12.01806 -11.85929 -11.75384 -11.65320 -11.59845 -11.43368 -11.39655 -11.13798 -11.09525 -10.59347 -9.78707 -8.96756 -8.19218 -6.28983 1.06035 1.41300 1.42617 1.54274 1.70594 2.40903 2.86557 3.13394 3.30187 3.32300 3.56670 3.64326 3.75401 3.79943 3.94725 4.11578 4.21145 4.33955 4.42892 4.47835 4.50408 4.55136 4.56625 4.61299 4.65107 4.69886 4.75554 4.76028 4.82027 4.83955 4.86476 4.87876 4.92074 5.06439 5.07504 5.08932 5.16670 5.19875 5.23174 5.27681 5.30214 5.33256 5.36671 5.39641 5.40150 5.45118 5.68564 6.10022 6.38115 6.39401 6.72505 6.88662 7.22294 7.40873 8.91886 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023228 B = 0.002493 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.138387 B =11227.852251 C =11542.297933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.536 5.536 3 C 0.205 3.795 4 C -0.520 4.520 5 H 0.065 0.935 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.968 3.032 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.262 1.262 12 C 0.078 3.922 13 H 0.012 0.988 14 C -0.108 4.108 15 C -0.082 4.082 16 H 0.121 0.879 17 C 0.132 3.868 18 N -0.601 5.601 19 C 0.661 3.339 20 O -0.594 6.594 21 O -0.365 6.365 22 C 0.122 3.878 23 C -0.181 4.181 24 C -0.134 4.134 25 C -0.177 4.177 26 C 0.111 3.889 27 C -0.081 4.081 28 H 0.125 0.875 29 C -0.095 4.095 30 H 0.003 0.997 31 H 0.054 0.946 32 H 0.089 0.911 33 H -0.050 1.050 34 H 0.011 0.989 35 H 0.263 0.737 36 H 0.045 0.955 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.094 0.906 50 H 0.059 0.941 51 H 0.089 0.911 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -22.006 12.980 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.261 5.261 3 C 0.079 3.921 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.199 4.199 7 N -0.578 5.578 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.186 1.186 12 C -0.031 4.031 13 H 0.030 0.970 14 C -0.146 4.146 15 C -0.101 4.101 16 H 0.139 0.861 17 C 0.011 3.989 18 N -0.341 5.341 19 C 0.416 3.584 20 O -0.486 6.486 21 O -0.280 6.280 22 C 0.086 3.914 23 C -0.238 4.238 24 C -0.191 4.191 25 C -0.234 4.234 26 C -0.011 4.011 27 C -0.100 4.100 28 H 0.143 0.857 29 C -0.133 4.133 30 H 0.022 0.978 31 H 0.073 0.927 32 H 0.108 0.892 33 H -0.032 1.032 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.111 0.889 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.077 0.923 51 H 0.107 0.893 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.993 -22.107 12.782 25.556 hybrid contribution 0.000 1.917 0.225 1.930 sum 0.993 -20.190 13.007 24.038 Atomic orbital electron populations 1.22260 0.87729 1.01802 0.99315 1.62273 1.07940 1.14765 1.41081 1.19402 0.94225 0.84047 0.94417 1.21499 1.34513 0.97392 1.02396 0.91664 1.25928 0.95116 0.98194 1.00632 1.70098 1.39580 1.11817 1.36300 0.85395 0.77818 0.78145 0.79346 1.19936 1.20993 1.18638 1.22124 0.94823 0.95397 0.90712 0.97039 1.22093 0.95111 0.96442 1.00945 1.22547 0.94504 0.93985 0.99029 0.86139 1.21942 0.95118 0.99202 0.82642 1.47083 1.09144 1.66565 1.11337 1.17664 0.83313 0.76876 0.80529 1.90882 1.13698 1.60924 1.83093 1.86321 1.40996 1.77826 1.22846 1.22459 0.93007 0.94826 0.81083 1.22482 1.00779 0.97745 1.02809 1.21876 0.98523 1.02368 0.96337 1.22453 0.99936 0.97070 1.03965 1.22238 0.79209 1.02706 0.96963 1.22601 0.93918 1.00421 0.93071 0.85701 1.22034 0.97185 0.90744 1.03338 0.97844 0.92665 0.89237 1.03219 0.97083 0.92838 0.93600 0.92311 0.90239 0.92640 0.92487 0.88785 0.92332 0.90875 0.87788 0.91562 0.92205 0.88945 0.91653 0.88764 0.92266 0.89279 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.36 9.04 127.69 1.15 2.51 16 2 N -0.54 -22.28 4.49 -899.48 -4.04 -26.32 16 3 C 0.21 10.95 4.48 85.56 0.38 11.34 16 4 C -0.52 -29.37 8.46 25.60 0.22 -29.15 16 5 H 0.07 3.58 7.12 -2.91 -0.02 3.56 16 6 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 7 N -0.94 -57.16 13.29 21.44 0.28 -56.87 16 8 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 12 C 0.08 2.63 2.39 45.28 0.11 2.74 16 13 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 14 C -0.11 -3.54 5.17 30.98 0.16 -3.38 16 15 C -0.08 -1.93 3.94 -9.53 -0.04 -1.97 16 16 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 17 C 0.13 3.29 6.23 86.65 0.54 3.83 16 18 N -0.60 -15.36 3.32 -947.16 -3.14 -18.51 16 19 C 0.66 18.77 7.91 129.79 1.03 19.79 16 20 O -0.59 -19.49 12.19 19.82 0.24 -19.25 16 21 O -0.37 -8.98 9.45 -55.52 -0.52 -9.50 16 22 C 0.12 2.34 1.13 -10.79 -0.01 2.33 16 23 C -0.18 -3.64 8.37 71.98 0.60 -3.03 16 24 C -0.13 -1.64 8.85 71.98 0.64 -1.01 16 25 C -0.18 -3.18 8.37 71.98 0.60 -2.57 16 26 C 0.11 2.32 6.07 86.63 0.53 2.84 16 27 C -0.08 -1.56 4.00 -9.50 -0.04 -1.60 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 29 C -0.10 -2.18 4.61 31.04 0.14 -2.04 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.05 2.22 6.76 -2.39 -0.02 2.20 16 32 H 0.09 2.52 6.51 -2.39 -0.02 2.51 16 33 H -0.05 -2.97 8.12 -2.39 -0.02 -2.98 16 34 H 0.01 0.64 6.25 -2.39 -0.01 0.62 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.05 1.60 7.29 -2.38 -0.02 1.58 16 37 H 0.06 2.29 6.60 -2.39 -0.02 2.28 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 43 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 47 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.63 8.11 -2.39 -0.02 1.61 16 50 H 0.06 1.38 7.59 -2.39 -0.02 1.36 16 51 H 0.09 2.02 7.08 -2.39 -0.02 2.01 16 52 H 0.08 1.61 7.98 -2.39 -0.02 1.59 16 Total: -1.00 -70.72 392.69 2.20 -68.52 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.88 Total: 14.50 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 6.48 Total: 1.03 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -6.90 Total: -101.70 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.28 Total: -28.75 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -70.72 2.20 -68.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254898780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.261 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds