Wall clock time and date at job start Tue Mar 31 2020 13:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46832 * 2 1 4 4 C 1.53004 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00728 * 276.16135 * 5 4 3 7 7 H 1.08000 * 119.99752 * 321.06533 * 6 5 4 8 8 C 1.38815 * 120.00221 * 141.05350 * 6 5 4 9 9 N 1.31619 * 119.99936 * 333.10961 * 8 6 5 10 10 Si 1.86800 * 119.99918 * 153.11086 * 8 6 5 11 11 H 1.48499 * 109.47101 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47018 * 120.00166 * 10 8 6 13 13 H 1.48502 * 109.46973 * 240.00138 * 10 8 6 14 14 C 1.46502 * 119.99517 * 96.17010 * 5 4 3 15 15 H 1.09002 * 109.43597 * 269.36883 * 14 5 4 16 16 C 1.54476 * 109.43890 * 29.27858 * 14 5 4 17 17 C 1.53707 * 108.18203 * 66.17788 * 16 14 5 18 18 H 1.08997 * 112.09843 * 188.15413 * 17 16 14 19 19 C 1.54613 * 108.37005 * 312.51066 * 17 16 14 20 20 C 1.54312 * 104.74865 * 88.89972 * 19 17 16 21 21 C 1.54609 * 104.75091 * 359.97438 * 20 19 17 22 22 H 1.09007 * 112.18753 * 147.42022 * 21 20 19 23 23 C 1.53149 * 109.86039 * 149.63656 * 14 5 4 24 24 N 1.48289 * 104.25923 * 25.14319 * 21 20 19 25 25 C 1.34773 * 128.21033 * 138.34956 * 24 21 20 26 26 O 1.21519 * 119.99863 * 359.97438 * 25 24 21 27 27 O 1.34635 * 120.00279 * 179.97438 * 25 24 21 28 28 C 1.45202 * 117.00121 * 179.97438 * 27 25 24 29 29 C 1.52997 * 109.47097 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.47019 * 60.00016 * 1 2 3 31 31 H 1.08997 * 109.47223 * 299.99897 * 1 2 3 32 32 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46896 * 119.99768 * 2 1 3 34 34 H 1.08997 * 109.47223 * 240.00103 * 2 1 3 35 35 H 1.08997 * 109.47825 * 300.00261 * 3 2 1 36 36 H 1.09010 * 109.47292 * 60.00254 * 3 2 1 37 37 H 1.08997 * 109.46694 * 60.00249 * 4 3 2 38 38 H 1.08994 * 109.47135 * 300.00092 * 4 3 2 39 39 H 0.97003 * 119.99932 * 358.55252 * 9 8 6 40 40 H 1.09001 * 109.47468 * 306.83151 * 16 14 5 41 41 H 1.08997 * 110.45927 * 186.09251 * 16 14 5 42 42 H 1.08995 * 110.38084 * 207.71506 * 19 17 16 43 43 H 1.09000 * 110.48175 * 330.03250 * 19 17 16 44 44 H 1.09003 * 110.37905 * 241.17458 * 20 19 17 45 45 H 1.09008 * 110.47581 * 118.86066 * 20 19 17 46 46 H 1.08998 * 109.66746 * 53.80052 * 23 14 5 47 47 H 1.08992 * 109.57511 * 174.11150 * 23 14 5 48 48 H 1.09003 * 109.47341 * 300.00133 * 28 27 25 49 49 H 1.09000 * 109.46906 * 60.00190 * 28 27 25 50 50 H 1.09001 * 109.47480 * 300.00126 * 29 28 27 51 51 H 1.09000 * 109.47259 * 60.00195 * 29 28 27 52 52 H 1.09001 * 109.47159 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1669 3.5112 -1.1793 7 1 4.5142 3.0062 -2.0685 8 6 3.8306 4.8569 -1.2318 9 7 2.9500 5.3487 -0.3862 10 14 4.6278 5.9699 -2.5027 11 1 5.5761 5.1793 -3.3278 12 1 3.5788 6.5543 -3.3765 13 1 5.3626 7.0611 -1.8138 14 6 4.4303 3.4696 1.2613 15 1 3.5617 3.9796 1.6777 16 6 4.9261 2.4003 2.2597 17 6 6.2359 1.8073 1.7163 18 1 6.5688 0.9472 2.2972 19 6 6.0311 1.4598 0.2237 20 6 6.4127 2.7479 -0.5355 21 6 6.8116 3.7528 0.5698 22 1 7.5926 4.4382 0.2407 23 6 5.5411 4.4944 1.0131 24 7 7.2402 2.8979 1.7032 25 6 8.2936 3.0708 2.5259 26 8 9.0291 4.0268 2.3786 27 8 8.5310 2.1843 3.5111 28 6 9.6835 2.4334 4.3584 29 6 9.7907 1.3285 5.4113 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9336 0.9287 -0.8891 38 1 3.9330 0.9289 0.8908 39 1 2.5205 4.7665 0.2599 40 1 4.1782 1.6124 2.3495 41 1 5.1057 2.8464 3.2379 42 1 6.6861 0.6390 -0.0683 43 1 4.9900 1.2004 0.0318 44 1 5.5587 3.1234 -1.0993 45 1 7.2550 2.5623 -1.2021 46 1 5.2320 5.1884 0.2315 47 1 5.7416 5.0452 1.9320 48 1 10.5872 2.4431 3.7491 49 1 9.5687 3.3976 4.8535 50 1 8.8870 1.3183 6.0207 51 1 9.9056 0.3644 4.9159 52 1 10.6556 1.5157 6.0477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255213401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:22 Heat of formation + Delta-G solvation = 47.534069 kcal Electronic energy + Delta-G solvation = -31146.948427 eV Core-core repulsion = 27344.729593 eV Total energy + Delta-G solvation = -3802.218835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22467 -39.54276 -36.47777 -35.59632 -34.42864 -32.40739 -31.78857 -31.11055 -30.41137 -29.71664 -27.69973 -24.76362 -23.78032 -23.30934 -22.95474 -22.24090 -20.89503 -20.43598 -19.10278 -18.78074 -17.66377 -16.74460 -16.47432 -16.23647 -15.74826 -15.07594 -14.41311 -14.18824 -14.11015 -13.91336 -13.63261 -13.44074 -13.09210 -12.82971 -12.72601 -12.63068 -12.50604 -12.10764 -11.97974 -11.88104 -11.69144 -11.46039 -11.37388 -11.16268 -10.96343 -10.76770 -10.72025 -10.39902 -10.34219 -10.23346 -10.20447 -10.05024 -9.98609 -9.84989 -9.66084 -9.49693 -9.29255 -8.68663 -8.11364 -7.92431 -6.71799 -6.21763 -3.54931 2.51021 3.28825 3.38288 3.42531 3.53497 4.31021 4.34011 4.92610 4.97829 4.99718 5.04605 5.27061 5.33477 5.34918 5.38036 5.41592 5.54433 5.55504 5.63037 5.73447 5.76638 5.85388 5.90076 5.92403 5.98345 6.06706 6.11179 6.14318 6.23485 6.24282 6.29558 6.34181 6.38012 6.42609 6.53990 6.56447 6.65126 6.76266 6.86458 6.94847 6.97058 6.99324 7.10879 7.15214 7.34274 7.44693 7.70433 8.17004 8.30028 8.50575 8.75514 8.92264 9.53719 10.07738 10.87735 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005249 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.283495 B = 5333.160014 C = 7076.427973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.139 4.139 4 C 0.138 3.862 5 N -0.596 5.596 6 C -0.357 4.357 7 H 0.075 0.925 8 C 0.000 4.000 9 N -0.878 5.878 10 Si 1.049 2.951 11 H -0.282 1.282 12 H -0.288 1.288 13 H -0.283 1.283 14 C 0.191 3.809 15 H 0.032 0.968 16 C -0.143 4.143 17 C 0.138 3.862 18 H 0.078 0.922 19 C -0.180 4.180 20 C -0.219 4.219 21 C 0.165 3.835 22 H 0.078 0.922 23 C -0.128 4.128 24 N -0.595 5.595 25 C 0.660 3.340 26 O -0.589 6.589 27 O -0.375 6.375 28 C 0.082 3.918 29 C -0.151 4.151 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.279 0.721 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.024 0.976 43 H 0.156 0.844 44 H 0.222 0.778 45 H 0.016 0.984 46 H 0.109 0.891 47 H 0.040 0.960 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 -9.377 5.484 11.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.179 4.179 4 C 0.014 3.986 5 N -0.321 5.321 6 C -0.483 4.483 7 H 0.091 0.909 8 C -0.208 4.208 9 N -0.512 5.512 10 Si 0.877 3.123 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.209 1.209 14 C 0.085 3.915 15 H 0.049 0.951 16 C -0.182 4.182 17 C 0.035 3.965 18 H 0.096 0.904 19 C -0.216 4.216 20 C -0.254 4.254 21 C 0.065 3.935 22 H 0.096 0.904 23 C -0.167 4.167 24 N -0.334 5.334 25 C 0.415 3.585 26 O -0.480 6.480 27 O -0.289 6.289 28 C 0.007 3.993 29 C -0.208 4.208 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.172 0.828 44 H 0.236 0.764 45 H 0.035 0.965 46 H 0.127 0.873 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.584 -7.501 5.025 9.714 hybrid contribution 0.397 -1.509 0.999 1.853 sum 3.981 -9.010 6.024 11.546 Atomic orbital electron populations 1.21758 0.96750 1.00498 1.01662 1.21526 0.95196 0.98462 1.00975 1.22263 0.99233 0.94252 1.02111 1.20828 0.90453 0.88289 0.98991 1.44352 1.73836 1.10657 1.03273 1.18765 1.44129 0.95615 0.89776 0.90857 1.26001 0.95305 0.97615 1.01908 1.70722 1.19496 1.41040 1.19976 0.83774 0.76335 0.76393 0.75837 1.20695 1.21469 1.20931 1.20418 0.94154 0.91038 0.85862 0.95086 1.22657 0.96597 1.00158 0.98823 1.22216 0.87050 0.88537 0.98703 0.90429 1.24409 1.07343 0.97627 0.92208 1.25572 1.07492 0.94346 0.97969 1.22267 0.94526 0.92692 0.84038 0.90398 1.22313 0.94150 0.98683 1.01541 1.48478 1.24768 1.28990 1.31203 1.17630 0.81102 0.80812 0.78944 1.90936 1.49673 1.32707 1.74720 1.86238 1.48804 1.51353 1.42547 1.22816 0.86168 0.99384 0.90946 1.21801 1.02723 0.98522 0.97728 0.92924 0.93149 0.93659 0.92923 0.92573 0.91686 0.93157 0.93029 0.92464 0.90979 0.91039 0.92434 0.95746 0.82773 0.76437 0.96498 0.87348 0.94084 0.91642 0.91558 0.91602 0.91657 0.90338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.81 16 3 C -0.14 -2.30 5.50 -26.73 -0.15 -2.45 16 4 C 0.14 2.37 3.03 -4.04 -0.01 2.36 16 5 N -0.60 -11.95 0.92 -287.29 -0.27 -12.22 16 6 C -0.36 -7.97 5.38 -15.06 -0.08 -8.06 16 7 H 0.07 1.68 7.24 -52.49 -0.38 1.30 16 8 C 0.00 0.00 2.97 -17.43 -0.05 -0.05 16 9 N -0.88 -22.60 12.76 55.49 0.71 -21.89 16 10 Si 1.05 22.30 29.35 -169.99 -4.99 17.31 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.19 3.91 2.42 -67.08 -0.16 3.74 16 15 H 0.03 0.71 6.83 -51.93 -0.35 0.36 16 16 C -0.14 -2.54 5.19 -25.59 -0.13 -2.67 16 17 C 0.14 2.49 4.03 -65.74 -0.27 2.22 16 18 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 19 C -0.18 -3.29 5.73 -25.20 -0.14 -3.43 16 20 C -0.22 -4.50 5.91 -25.20 -0.15 -4.65 16 21 C 0.16 3.51 4.11 -65.76 -0.27 3.24 16 22 H 0.08 1.73 7.96 -51.93 -0.41 1.32 16 23 C -0.13 -2.79 5.04 -26.32 -0.13 -2.93 16 24 N -0.59 -12.03 2.75 -158.92 -0.44 -12.47 16 25 C 0.66 13.63 8.72 54.05 0.47 14.10 16 26 O -0.59 -13.58 16.47 -19.29 -0.32 -13.89 16 27 O -0.37 -6.55 9.80 -40.31 -0.40 -6.95 16 28 C 0.08 1.11 6.19 37.16 0.23 1.34 16 29 C -0.15 -1.44 10.29 37.16 0.38 -1.06 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.05 0.89 7.36 -51.93 -0.38 0.51 16 38 H 0.06 0.91 4.37 -51.93 -0.23 0.69 16 39 H 0.28 7.28 6.63 -40.82 -0.27 7.01 16 40 H 0.07 1.15 6.12 -51.93 -0.32 0.83 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.16 2.71 0.87 -129.24 -0.11 2.60 16 44 H 0.22 4.75 1.34 -128.37 -0.17 4.58 16 45 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.11 2.58 4.14 -51.93 -0.21 2.36 16 47 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -26.47 374.78 -9.12 -35.59 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.82 Total: 10.44 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.26 Total: -1.57 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.01 Total: -46.58 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.71 Total: -20.84 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.99 Total: 17.31 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -26.47 -9.12 -35.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255213401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.125 kcal (2) G-P(sol) polarization free energy of solvation -26.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds