Wall clock time and date at job start Tue Mar 31 2020 13:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46832 * 2 1 4 4 C 1.53004 * 109.47123 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00728 * 276.16135 * 5 4 3 7 7 H 1.08000 * 119.99752 * 321.06533 * 6 5 4 8 8 C 1.38815 * 120.00221 * 141.05350 * 6 5 4 9 9 N 1.31619 * 119.99936 * 333.10961 * 8 6 5 10 10 Si 1.86800 * 119.99918 * 153.11086 * 8 6 5 11 11 H 1.48499 * 109.47101 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47018 * 120.00166 * 10 8 6 13 13 H 1.48502 * 109.46973 * 240.00138 * 10 8 6 14 14 C 1.46502 * 119.99517 * 96.17010 * 5 4 3 15 15 H 1.09002 * 109.43597 * 269.36883 * 14 5 4 16 16 C 1.54476 * 109.43890 * 29.27858 * 14 5 4 17 17 C 1.53707 * 108.18203 * 66.17788 * 16 14 5 18 18 H 1.08997 * 112.09843 * 188.15413 * 17 16 14 19 19 C 1.54613 * 108.37005 * 312.51066 * 17 16 14 20 20 C 1.54312 * 104.74865 * 88.89972 * 19 17 16 21 21 C 1.54609 * 104.75091 * 359.97438 * 20 19 17 22 22 H 1.09007 * 112.18753 * 147.42022 * 21 20 19 23 23 C 1.53149 * 109.86039 * 149.63656 * 14 5 4 24 24 N 1.48289 * 104.25923 * 25.14319 * 21 20 19 25 25 C 1.34773 * 128.21033 * 138.34956 * 24 21 20 26 26 O 1.21519 * 119.99863 * 359.97438 * 25 24 21 27 27 O 1.34635 * 120.00279 * 179.97438 * 25 24 21 28 28 C 1.45202 * 117.00121 * 179.97438 * 27 25 24 29 29 C 1.52997 * 109.47097 * 180.02562 * 28 27 25 30 30 H 1.09003 * 109.47019 * 60.00016 * 1 2 3 31 31 H 1.08997 * 109.47223 * 299.99897 * 1 2 3 32 32 H 1.09002 * 109.46933 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46896 * 119.99768 * 2 1 3 34 34 H 1.08997 * 109.47223 * 240.00103 * 2 1 3 35 35 H 1.08997 * 109.47825 * 300.00261 * 3 2 1 36 36 H 1.09010 * 109.47292 * 60.00254 * 3 2 1 37 37 H 1.08997 * 109.46694 * 60.00249 * 4 3 2 38 38 H 1.08994 * 109.47135 * 300.00092 * 4 3 2 39 39 H 0.97003 * 119.99932 * 358.55252 * 9 8 6 40 40 H 1.09001 * 109.47468 * 306.83151 * 16 14 5 41 41 H 1.08997 * 110.45927 * 186.09251 * 16 14 5 42 42 H 1.08995 * 110.38084 * 207.71506 * 19 17 16 43 43 H 1.09000 * 110.48175 * 330.03250 * 19 17 16 44 44 H 1.09003 * 110.37905 * 241.17458 * 20 19 17 45 45 H 1.09008 * 110.47581 * 118.86066 * 20 19 17 46 46 H 1.08998 * 109.66746 * 53.80052 * 23 14 5 47 47 H 1.08992 * 109.57511 * 174.11150 * 23 14 5 48 48 H 1.09003 * 109.47341 * 300.00133 * 28 27 25 49 49 H 1.09000 * 109.46906 * 60.00190 * 28 27 25 50 50 H 1.09001 * 109.47480 * 300.00126 * 29 28 27 51 51 H 1.09000 * 109.47259 * 60.00195 * 29 28 27 52 52 H 1.09001 * 109.47159 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.1669 3.5112 -1.1793 7 1 4.5142 3.0062 -2.0685 8 6 3.8306 4.8569 -1.2318 9 7 2.9500 5.3487 -0.3862 10 14 4.6278 5.9699 -2.5027 11 1 5.5761 5.1793 -3.3278 12 1 3.5788 6.5543 -3.3765 13 1 5.3626 7.0611 -1.8138 14 6 4.4303 3.4696 1.2613 15 1 3.5617 3.9796 1.6777 16 6 4.9261 2.4003 2.2597 17 6 6.2359 1.8073 1.7163 18 1 6.5688 0.9472 2.2972 19 6 6.0311 1.4598 0.2237 20 6 6.4127 2.7479 -0.5355 21 6 6.8116 3.7528 0.5698 22 1 7.5926 4.4382 0.2407 23 6 5.5411 4.4944 1.0131 24 7 7.2402 2.8979 1.7032 25 6 8.2936 3.0708 2.5259 26 8 9.0291 4.0268 2.3786 27 8 8.5310 2.1843 3.5111 28 6 9.6835 2.4334 4.3584 29 6 9.7907 1.3285 5.4113 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8901 37 1 3.9336 0.9287 -0.8891 38 1 3.9330 0.9289 0.8908 39 1 2.5205 4.7665 0.2599 40 1 4.1782 1.6124 2.3495 41 1 5.1057 2.8464 3.2379 42 1 6.6861 0.6390 -0.0683 43 1 4.9900 1.2004 0.0318 44 1 5.5587 3.1234 -1.0993 45 1 7.2550 2.5623 -1.2021 46 1 5.2320 5.1884 0.2315 47 1 5.7416 5.0452 1.9320 48 1 10.5872 2.4431 3.7491 49 1 9.5687 3.3976 4.8535 50 1 8.8870 1.3183 6.0207 51 1 9.9056 0.3644 4.9159 52 1 10.6556 1.5157 6.0477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255213401.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:21 Heat of formation + Delta-G solvation = 35.659853 kcal Electronic energy + Delta-G solvation = -31147.463332 eV Core-core repulsion = 27344.729593 eV Total energy + Delta-G solvation = -3802.733739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.82977 -41.05025 -37.94717 -37.13220 -35.87516 -33.95609 -32.95788 -32.68122 -31.96188 -31.21492 -29.15294 -26.35965 -25.12392 -24.93377 -24.35616 -23.54968 -22.09231 -21.97967 -20.75673 -20.34612 -19.27164 -18.38205 -17.96955 -17.65528 -17.28535 -16.42197 -16.05519 -15.58306 -15.42774 -15.34861 -15.27142 -14.82761 -14.48561 -14.33696 -14.13985 -13.87825 -13.59529 -13.57377 -13.40961 -13.12486 -13.08314 -12.92001 -12.67406 -12.56376 -12.46133 -12.28446 -11.95778 -11.88967 -11.84395 -11.69718 -11.63434 -11.57688 -11.55454 -11.45063 -11.23250 -11.12125 -10.86941 -10.27900 -9.77879 -9.66721 -8.51194 -7.97099 -5.36163 1.06385 1.63096 1.66979 1.68398 1.80843 2.60985 2.92578 3.20513 3.44898 3.80339 3.88830 3.96856 4.07247 4.08866 4.14823 4.22349 4.24807 4.29204 4.30631 4.43586 4.46804 4.48574 4.56715 4.61824 4.64969 4.69162 4.84933 4.87596 4.89124 5.02151 5.04770 5.07057 5.11378 5.12660 5.16407 5.22163 5.26286 5.34045 5.36244 5.38267 5.44405 5.50201 5.56418 5.58583 5.68627 5.87603 6.01497 6.45105 6.59567 6.73295 7.17418 7.18408 7.79499 8.31615 9.02055 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011701 B = 0.005249 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.283495 B = 5333.160014 C = 7076.427973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.128 4.128 4 C 0.135 3.865 5 N -0.600 5.600 6 C -0.336 4.336 7 H 0.074 0.926 8 C -0.035 4.035 9 N -0.914 5.914 10 Si 1.074 2.926 11 H -0.262 1.262 12 H -0.291 1.291 13 H -0.296 1.296 14 C 0.196 3.804 15 H 0.004 0.996 16 C -0.133 4.133 17 C 0.140 3.860 18 H 0.103 0.897 19 C -0.175 4.175 20 C -0.216 4.216 21 C 0.164 3.836 22 H 0.059 0.941 23 C -0.124 4.124 24 N -0.598 5.598 25 C 0.657 3.343 26 O -0.622 6.622 27 O -0.370 6.370 28 C 0.070 3.930 29 C -0.140 4.140 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.266 0.734 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.166 0.834 44 H 0.210 0.790 45 H 0.013 0.987 46 H 0.086 0.914 47 H 0.026 0.974 48 H 0.064 0.936 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.070 0.930 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -12.743 6.423 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.168 4.168 4 C 0.012 3.988 5 N -0.325 5.325 6 C -0.463 4.463 7 H 0.091 0.909 8 C -0.238 4.238 9 N -0.551 5.551 10 Si 0.901 3.099 11 H -0.186 1.186 12 H -0.218 1.218 13 H -0.223 1.223 14 C 0.090 3.910 15 H 0.021 0.979 16 C -0.172 4.172 17 C 0.038 3.962 18 H 0.121 0.879 19 C -0.212 4.212 20 C -0.251 4.251 21 C 0.063 3.937 22 H 0.077 0.923 23 C -0.163 4.163 24 N -0.338 5.338 25 C 0.413 3.587 26 O -0.515 6.515 27 O -0.285 6.285 28 C -0.004 4.004 29 C -0.197 4.197 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.116 0.884 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.182 0.818 44 H 0.224 0.776 45 H 0.032 0.968 46 H 0.104 0.896 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.087 0.913 51 H 0.089 0.911 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.200 -10.922 5.963 13.134 hybrid contribution 0.286 -0.486 0.748 0.937 sum 4.486 -11.408 6.711 13.975 Atomic orbital electron populations 1.21751 0.96140 1.01726 1.01046 1.21474 0.95746 0.95924 1.02339 1.22100 0.98655 0.96258 0.99778 1.20991 0.90857 0.86496 1.00459 1.44442 1.74088 1.11533 1.02442 1.18867 1.41656 0.95411 0.90390 0.90950 1.26597 0.95535 0.99083 1.02574 1.70809 1.21811 1.40914 1.21598 0.83430 0.76036 0.75559 0.74919 1.18601 1.21765 1.22289 1.20249 0.92577 0.91560 0.86653 0.97895 1.22574 0.97156 0.99772 0.97724 1.22385 0.86331 0.88548 0.98901 0.87894 1.24413 1.08260 0.96579 0.91903 1.25395 1.06624 0.95402 0.97721 1.22113 0.93593 0.92899 0.85070 0.92289 1.22199 0.95175 0.98856 1.00061 1.48477 1.25186 1.29265 1.30828 1.17779 0.80768 0.80815 0.79364 1.90907 1.50812 1.34173 1.75656 1.86255 1.50269 1.50126 1.41802 1.23253 0.84807 1.01118 0.91194 1.21821 1.04169 0.97056 0.96647 0.93920 0.93509 0.91470 0.91028 0.91621 0.94867 0.94742 0.92136 0.90030 0.92339 0.88428 0.92357 0.94409 0.81776 0.77578 0.96787 0.89584 0.95495 0.91759 0.91950 0.91257 0.91112 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.12 -2.77 5.93 30.59 0.18 -2.59 16 3 C -0.13 -4.08 5.50 30.59 0.17 -3.91 16 4 C 0.13 4.31 3.03 86.38 0.26 4.57 16 5 N -0.60 -23.71 0.92 ******* -0.98 -24.69 16 6 C -0.34 -15.07 5.38 84.04 0.45 -14.61 16 7 H 0.07 3.28 7.24 -2.91 -0.02 3.26 16 8 C -0.03 -1.70 2.97 84.86 0.25 -1.44 16 9 N -0.91 -48.98 12.76 21.65 0.28 -48.71 16 10 Si 1.07 46.19 29.35 68.60 2.01 48.20 16 11 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 12 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 14 C 0.20 8.00 2.42 45.54 0.11 8.11 16 15 H 0.00 0.17 6.83 -2.39 -0.02 0.15 16 16 C -0.13 -4.43 5.19 31.33 0.16 -4.27 16 17 C 0.14 4.65 4.03 45.44 0.18 4.84 16 18 H 0.10 2.99 7.92 -2.39 -0.02 2.97 16 19 C -0.18 -5.89 5.73 31.59 0.18 -5.71 16 20 C -0.22 -8.65 5.91 31.59 0.19 -8.46 16 21 C 0.16 7.03 4.11 45.41 0.19 7.22 16 22 H 0.06 2.71 7.96 -2.38 -0.02 2.69 16 23 C -0.12 -5.56 5.04 30.86 0.16 -5.40 16 24 N -0.60 -23.55 2.75 -887.13 -2.44 -25.98 16 25 C 0.66 26.58 8.72 129.79 1.13 27.71 16 26 O -0.62 -28.83 16.47 19.78 0.33 -28.50 16 27 O -0.37 -12.23 9.80 -55.44 -0.54 -12.77 16 28 C 0.07 1.78 6.19 71.98 0.45 2.23 16 29 C -0.14 -2.23 10.29 71.98 0.74 -1.49 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 36 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.90 7.36 -2.39 -0.02 1.88 16 38 H 0.08 2.26 4.37 -2.39 -0.01 2.25 16 39 H 0.27 14.54 6.63 -92.71 -0.61 13.92 16 40 H 0.10 2.75 6.12 -2.39 -0.01 2.74 16 41 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.17 5.21 0.87 -75.01 -0.07 5.15 16 44 H 0.21 8.88 1.34 -74.19 -0.10 8.78 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 46 H 0.09 4.28 4.14 -2.39 -0.01 4.27 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -59.39 374.78 5.07 -54.32 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.90 Total: 34.00 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 5.51 Total: 4.13 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -3.14 Total: -99.39 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.22 Total: -41.28 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.01 Total: 48.20 kcal Total: -59.39 5.07 -54.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255213401.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.981 kcal (2) G-P(sol) polarization free energy of solvation -59.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds