Wall clock time and date at job start Tue Mar 31 2020 15:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46901 * 110.99893 * 2 1
4 4 C 1.50702 * 109.47387 * 293.95766 * 3 2 1
5 5 H 1.07995 * 119.99837 * 359.97438 * 4 3 2
6 6 C 1.37872 * 120.00209 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00037 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 120.00003 * 179.97438 * 6 4 3
9 9 H 1.48509 * 109.46945 * 89.99895 * 8 6 4
10 10 H 1.48500 * 109.47301 * 209.99238 * 8 6 4
11 11 H 1.48500 * 109.47276 * 329.99825 * 8 6 4
12 12 C 1.46896 * 111.00349 * 123.95720 * 2 1 3
13 13 H 1.08999 * 109.43687 * 185.95949 * 12 2 1
14 14 C 1.53141 * 109.43600 * 66.04445 * 12 2 1
15 15 C 1.53698 * 108.87645 * 186.08777 * 14 12 2
16 16 H 1.09005 * 112.58662 * 187.93253 * 15 14 12
17 17 C 1.54219 * 107.72615 * 312.06074 * 15 14 12
18 18 C 1.54309 * 104.78788 * 88.97844 * 17 15 14
19 19 C 1.54602 * 104.75228 * 359.82809 * 18 17 15
20 20 H 1.08996 * 112.19436 * 146.80102 * 19 18 17
21 21 C 1.53707 * 107.83152 * 271.33688 * 19 18 17
22 22 N 1.48290 * 107.27995 * 64.00934 * 15 14 12
23 23 C 1.34780 * 128.21021 * 107.43500 * 22 15 14
24 24 O 1.21508 * 120.00004 * 179.68171 * 23 22 15
25 25 O 1.34639 * 120.00005 * 359.67866 * 23 22 15
26 26 C 1.45194 * 116.99841 * 179.97438 * 25 23 22
27 27 C 1.52997 * 109.47339 * 60.00459 * 26 25 23
28 28 C 1.53006 * 109.47359 * 300.00176 * 26 25 23
29 29 C 1.52999 * 109.46968 * 180.02562 * 26 25 23
30 30 H 1.09001 * 109.47110 * 296.04426 * 1 2 3
31 31 H 1.09000 * 109.47388 * 56.04260 * 1 2 3
32 32 H 1.08999 * 109.46827 * 176.04526 * 1 2 3
33 33 H 1.09004 * 109.47006 * 53.95532 * 3 2 1
34 34 H 1.08998 * 109.47295 * 173.95674 * 3 2 1
35 35 H 0.96997 * 119.99758 * 180.02562 * 7 6 4
36 36 H 1.08997 * 109.57017 * 66.26972 * 14 12 2
37 37 H 1.09000 * 109.67329 * 305.96772 * 14 12 2
38 38 H 1.09005 * 110.50921 * 330.07799 * 17 15 14
39 39 H 1.08997 * 110.31793 * 207.78637 * 17 15 14
40 40 H 1.09003 * 110.38301 * 241.00512 * 18 17 15
41 41 H 1.09003 * 110.38210 * 118.64710 * 18 17 15
42 42 H 1.08998 * 109.56876 * 167.59056 * 21 19 18
43 43 H 1.08996 * 109.56907 * 287.95207 * 21 19 18
44 44 H 1.09002 * 109.47153 * 59.99705 * 27 26 25
45 45 H 1.09001 * 109.46832 * 299.99896 * 27 26 25
46 46 H 1.09004 * 109.47261 * 179.97438 * 27 26 25
47 47 H 1.08993 * 109.46955 * 180.02562 * 28 26 25
48 48 H 1.09000 * 109.47050 * 300.00254 * 28 26 25
49 49 H 1.09001 * 109.47002 * 59.99988 * 28 26 25
50 50 H 1.09002 * 109.46716 * 299.99800 * 29 26 25
51 51 H 1.09000 * 109.47486 * 59.99718 * 29 26 25
52 52 H 1.09001 * 109.47362 * 180.02562 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0472 -1.2984
5 1 1.0745 1.5114 -2.0487
6 6 2.0275 3.3492 -1.5288
7 7 2.7128 4.0016 -0.6153
8 14 1.5836 4.1866 -3.1386
9 1 0.2715 4.8675 -2.9970
10 1 2.6262 5.1874 -3.4799
11 1 1.5002 3.1707 -4.2185
12 6 1.9955 -0.7660 1.1375
13 1 3.0799 -0.6620 1.1740
14 6 1.6308 -2.2438 0.9692
15 6 2.0519 -3.0072 2.2350
16 1 1.9470 -4.0868 2.1272
17 6 3.4994 -2.5953 2.5719
18 6 3.3550 -1.3572 3.4815
19 6 1.8300 -1.1349 3.6048
20 1 1.5496 -0.7350 4.5792
21 6 1.3915 -0.2261 2.4454
22 7 1.2446 -2.4751 3.3593
23 6 0.2244 -3.0708 4.0082
24 8 -0.3338 -2.4951 4.9211
25 8 -0.1763 -4.3037 3.6447
26 6 -1.2805 -4.8837 4.3880
27 6 -2.5154 -3.9917 4.2458
28 6 -0.8986 -4.9944 5.8655
29 6 -1.5908 -6.2767 3.8362
30 1 -0.3633 0.4512 0.9233
31 1 -0.3634 0.5740 -0.8524
32 1 -0.3633 -1.0252 -0.0709
33 1 1.5611 1.9273 0.8310
34 1 3.0797 1.3445 0.1082
35 1 2.9873 4.9177 -0.7773
36 1 2.1541 -2.6529 0.1050
37 1 0.5549 -2.3420 0.8246
38 1 4.0444 -2.3376 1.6637
39 1 4.0078 -3.3996 3.1035
40 1 3.8290 -0.4904 3.0210
41 1 3.7905 -1.5531 4.4614
42 1 0.3041 -0.2273 2.3716
43 1 1.7460 0.7892 2.6232
44 1 -2.7875 -3.9129 3.1932
45 1 -2.2941 -2.9996 4.6391
46 1 -3.3445 -4.4274 4.8034
47 1 -1.7274 -5.4302 6.4232
48 1 -0.0189 -5.6299 5.9667
49 1 -0.6773 -4.0022 6.2588
50 1 -1.8627 -6.1981 2.7836
51 1 -0.7109 -6.9120 3.9377
52 1 -2.4200 -6.7120 4.3938
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255235462.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:58
Heat of formation + Delta-G solvation = -66.998155 kcal
Electronic energy + Delta-G solvation = -29984.833370 eV
Core-core repulsion = 26177.648045 eV
Total energy + Delta-G solvation = -3807.185325 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.23341 -40.02046 -36.97020 -36.18075 -34.18034 -32.70087 -31.54917 -31.32642
-30.04087 -27.59154 -27.52539 -27.06745 -25.61745 -24.19506 -23.87126 -22.20272
-20.92531 -20.40894 -19.58570 -18.62789 -17.54087 -16.58394 -16.55615 -16.18974
-15.73210 -15.28435 -14.65653 -14.50045 -14.18054 -13.96730 -13.68350 -13.62195
-13.49995 -13.13536 -12.92049 -12.79607 -12.65764 -12.40258 -12.33590 -12.05597
-12.01364 -12.00059 -11.81984 -11.59167 -11.44771 -11.37258 -11.15135 -11.01137
-10.85280 -10.67753 -10.52131 -10.45147 -10.34340 -10.19958 -10.14462 -9.99711
-9.72043 -9.19925 -8.68330 -8.42507 -7.18562 -6.02899 -4.03773 2.06262
2.89127 3.31544 3.37914 3.42157 3.81693 4.41789 4.54044 4.55700
4.59432 4.62113 4.73719 4.81845 5.00275 5.13629 5.26359 5.27002
5.30795 5.33239 5.34963 5.36795 5.40732 5.49530 5.53590 5.58165
5.64575 5.69481 5.71042 5.80188 5.89774 5.97100 5.97401 6.06456
6.12959 6.14732 6.17421 6.22478 6.25035 6.28530 6.40207 6.47156
6.56092 6.67812 6.81080 7.29290 7.36756 7.63299 7.80721 8.08724
8.20807 8.38246 8.56479 9.03971 9.60457 11.07877
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.020842 B = 0.003050 C = 0.002893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1343.114576 B = 9178.264973 C = 9675.702307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.533 5.533
3 C 0.193 3.807
4 C -0.507 4.507
5 H 0.062 0.938
6 C 0.055 3.945
7 N -0.899 5.899
8 Si 0.896 3.104
9 H -0.282 1.282
10 H -0.287 1.287
11 H -0.273 1.273
12 C 0.086 3.914
13 H 0.082 0.918
14 C -0.119 4.119
15 C 0.133 3.867
16 H 0.099 0.901
17 C -0.130 4.130
18 C -0.132 4.132
19 C 0.158 3.842
20 H 0.098 0.902
21 C -0.165 4.165
22 N -0.599 5.599
23 C 0.673 3.327
24 O -0.574 6.574
25 O -0.363 6.363
26 C 0.136 3.864
27 C -0.184 4.184
28 C -0.182 4.182
29 C -0.140 4.140
30 H 0.016 0.984
31 H 0.072 0.928
32 H 0.044 0.956
33 H -0.007 1.007
34 H 0.028 0.972
35 H 0.261 0.739
36 H 0.080 0.920
37 H 0.066 0.934
38 H 0.088 0.912
39 H 0.068 0.932
40 H 0.089 0.911
41 H 0.069 0.931
42 H 0.070 0.930
43 H 0.081 0.919
44 H 0.060 0.940
45 H 0.088 0.912
46 H 0.068 0.932
47 H 0.068 0.932
48 H 0.058 0.942
49 H 0.087 0.913
50 H 0.067 0.933
51 H 0.065 0.935
52 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.379 -19.419 10.922 22.535
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 N -0.255 5.255
3 C 0.068 3.932
4 C -0.545 4.545
5 H 0.080 0.920
6 C -0.146 4.146
7 N -0.538 5.538
8 Si 0.724 3.276
9 H -0.208 1.208
10 H -0.213 1.213
11 H -0.198 1.198
12 C -0.024 4.024
13 H 0.100 0.900
14 C -0.158 4.158
15 C 0.030 3.970
16 H 0.117 0.883
17 C -0.169 4.169
18 C -0.170 4.170
19 C 0.056 3.944
20 H 0.116 0.884
21 C -0.204 4.204
22 N -0.340 5.340
23 C 0.429 3.571
24 O -0.464 6.464
25 O -0.277 6.277
26 C 0.099 3.901
27 C -0.241 4.241
28 C -0.239 4.239
29 C -0.197 4.197
30 H 0.034 0.966
31 H 0.091 0.909
32 H 0.063 0.937
33 H 0.011 0.989
34 H 0.046 0.954
35 H 0.070 0.930
36 H 0.099 0.901
37 H 0.085 0.915
38 H 0.106 0.894
39 H 0.086 0.914
40 H 0.108 0.892
41 H 0.087 0.913
42 H 0.089 0.911
43 H 0.099 0.901
44 H 0.079 0.921
45 H 0.107 0.893
46 H 0.087 0.913
47 H 0.087 0.913
48 H 0.077 0.923
49 H 0.106 0.894
50 H 0.086 0.914
51 H 0.084 0.916
52 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -3.460 -19.399 10.846 22.494
hybrid contribution -0.596 1.028 -0.039 1.189
sum -4.057 -18.371 10.808 21.697
Atomic orbital electron populations
1.22282 0.89343 0.99427 1.00538 1.62333 1.06836 1.17899 1.38468
1.19718 0.95207 0.81690 0.96552 1.21175 1.34682 0.96911 1.01779
0.91952 1.24975 0.95317 0.97369 0.96930 1.69952 1.38421 1.11402
1.34073 0.86527 0.77982 0.79243 0.83840 1.20798 1.21276 1.19792
1.21940 0.99605 0.92526 0.88321 0.89962 1.22146 1.02089 0.95456
0.96118 1.22302 0.89986 0.98536 0.86216 0.88323 1.22559 0.95849
0.97810 1.00654 1.22656 0.94993 0.99114 1.00277 1.22236 0.91886
0.80789 0.99471 0.88354 1.22972 1.02292 0.99444 0.95735 1.47956
1.32106 1.18455 1.35440 1.17391 0.79491 0.79918 0.80282 1.90880
1.57531 1.66092 1.31896 1.86302 1.51043 1.30212 1.60189 1.22025
0.84017 0.92906 0.91144 1.22515 0.96516 1.02385 1.02661 1.22510
1.01916 1.04699 0.94819 1.21847 1.02271 0.93413 1.02155 0.96608
0.90936 0.93731 0.98947 0.95365 0.92967 0.90144 0.91505 0.89372
0.91370 0.89246 0.91255 0.91094 0.90075 0.92129 0.89330 0.91325
0.91318 0.92334 0.89376 0.91434 0.91574 0.90278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.64 8.64 60.06 0.52 1.16 16
2 N -0.53 -11.06 4.70 -235.71 -1.11 -12.17 16
3 C 0.19 4.87 4.30 -4.97 -0.02 4.85 16
4 C -0.51 -14.05 8.46 -34.44 -0.29 -14.34 16
5 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16
6 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16
7 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16
8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16
9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16
12 C 0.09 1.42 1.83 -67.20 -0.12 1.30 16
13 H 0.08 1.36 5.32 -51.93 -0.28 1.08 16
14 C -0.12 -1.67 4.95 -26.30 -0.13 -1.80 16
15 C 0.13 1.61 4.13 -65.94 -0.27 1.34 16
16 H 0.10 1.09 7.93 -51.93 -0.41 0.68 16
17 C -0.13 -1.38 5.96 -25.41 -0.15 -1.53 16
18 C -0.13 -1.52 5.98 -25.20 -0.15 -1.67 16
19 C 0.16 2.20 4.12 -65.73 -0.27 1.93 16
20 H 0.10 1.40 7.93 -51.93 -0.41 0.99 16
21 C -0.16 -2.67 4.25 -25.92 -0.11 -2.78 16
22 N -0.60 -8.37 2.76 -159.11 -0.44 -8.81 16
23 C 0.67 10.16 8.03 54.06 0.43 10.60 16
24 O -0.57 -9.72 12.20 -19.28 -0.24 -9.95 16
25 O -0.36 -4.85 9.47 -40.32 -0.38 -5.23 16
26 C 0.14 1.47 1.13 -90.62 -0.10 1.37 16
27 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16
28 C -0.18 -1.87 8.37 37.16 0.31 -1.56 16
29 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16
30 H 0.02 0.31 6.09 -51.93 -0.32 -0.01 16
31 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16
32 H 0.04 0.77 6.35 -51.93 -0.33 0.44 16
33 H -0.01 -0.20 7.21 -51.93 -0.37 -0.57 16
34 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16
35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16
37 H 0.07 1.02 6.31 -51.93 -0.33 0.69 16
38 H 0.09 0.92 7.03 -51.93 -0.36 0.55 16
39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
40 H 0.09 1.07 7.05 -51.93 -0.37 0.70 16
41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.07 1.26 6.02 -51.93 -0.31 0.95 16
43 H 0.08 1.43 7.24 -51.93 -0.38 1.05 16
44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
45 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16
46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
49 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16
50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
51 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
52 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
LS Contribution 383.88 15.07 5.78 5.78
Total: -1.00 -30.86 383.88 -9.46 -40.32
By element:
Atomic # 1 Polarization: 10.35 SS G_CDS: -8.98 Total: 1.37 kcal
Atomic # 6 Polarization: -2.37 SS G_CDS: 0.18 Total: -2.18 kcal
Atomic # 7 Polarization: -45.81 SS G_CDS: -0.81 Total: -46.62 kcal
Atomic # 8 Polarization: -14.57 SS G_CDS: -0.62 Total: -15.19 kcal
Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal
Total LS contribution 5.78 Total: 5.78 kcal
Total: -30.86 -9.46 -40.32 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255235462.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.678 kcal
(2) G-P(sol) polarization free energy of solvation -30.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.320 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds