Wall clock time and date at job start Tue Mar 31 2020 15:08:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46901 * 110.99893 * 2 1
4 4 C 1.50702 * 109.47387 * 293.95766 * 3 2 1
5 5 H 1.07995 * 119.99837 * 359.97438 * 4 3 2
6 6 C 1.37872 * 120.00209 * 180.02562 * 4 3 2
7 7 N 1.31516 * 120.00037 * 359.97438 * 6 4 3
8 8 Si 1.86803 * 120.00003 * 179.97438 * 6 4 3
9 9 H 1.48509 * 109.46945 * 89.99895 * 8 6 4
10 10 H 1.48500 * 109.47301 * 209.99238 * 8 6 4
11 11 H 1.48500 * 109.47276 * 329.99825 * 8 6 4
12 12 C 1.46896 * 111.00349 * 123.95720 * 2 1 3
13 13 H 1.08999 * 109.43687 * 185.95949 * 12 2 1
14 14 C 1.53141 * 109.43600 * 66.04445 * 12 2 1
15 15 C 1.53698 * 108.87645 * 186.08777 * 14 12 2
16 16 H 1.09005 * 112.58662 * 187.93253 * 15 14 12
17 17 C 1.54219 * 107.72615 * 312.06074 * 15 14 12
18 18 C 1.54309 * 104.78788 * 88.97844 * 17 15 14
19 19 C 1.54602 * 104.75228 * 359.82809 * 18 17 15
20 20 H 1.08996 * 112.19436 * 146.80102 * 19 18 17
21 21 C 1.53707 * 107.83152 * 271.33688 * 19 18 17
22 22 N 1.48290 * 107.27995 * 64.00934 * 15 14 12
23 23 C 1.34780 * 128.21021 * 107.43500 * 22 15 14
24 24 O 1.21508 * 120.00004 * 179.68171 * 23 22 15
25 25 O 1.34639 * 120.00005 * 359.67866 * 23 22 15
26 26 C 1.45194 * 116.99841 * 179.97438 * 25 23 22
27 27 C 1.52997 * 109.47339 * 60.00459 * 26 25 23
28 28 C 1.53006 * 109.47359 * 300.00176 * 26 25 23
29 29 C 1.52999 * 109.46968 * 180.02562 * 26 25 23
30 30 H 1.09001 * 109.47110 * 296.04426 * 1 2 3
31 31 H 1.09000 * 109.47388 * 56.04260 * 1 2 3
32 32 H 1.08999 * 109.46827 * 176.04526 * 1 2 3
33 33 H 1.09004 * 109.47006 * 53.95532 * 3 2 1
34 34 H 1.08998 * 109.47295 * 173.95674 * 3 2 1
35 35 H 0.96997 * 119.99758 * 180.02562 * 7 6 4
36 36 H 1.08997 * 109.57017 * 66.26972 * 14 12 2
37 37 H 1.09000 * 109.67329 * 305.96772 * 14 12 2
38 38 H 1.09005 * 110.50921 * 330.07799 * 17 15 14
39 39 H 1.08997 * 110.31793 * 207.78637 * 17 15 14
40 40 H 1.09003 * 110.38301 * 241.00512 * 18 17 15
41 41 H 1.09003 * 110.38210 * 118.64710 * 18 17 15
42 42 H 1.08998 * 109.56876 * 167.59056 * 21 19 18
43 43 H 1.08996 * 109.56907 * 287.95207 * 21 19 18
44 44 H 1.09002 * 109.47153 * 59.99705 * 27 26 25
45 45 H 1.09001 * 109.46832 * 299.99896 * 27 26 25
46 46 H 1.09004 * 109.47261 * 179.97438 * 27 26 25
47 47 H 1.08993 * 109.46955 * 180.02562 * 28 26 25
48 48 H 1.09000 * 109.47050 * 300.00254 * 28 26 25
49 49 H 1.09001 * 109.47002 * 59.99988 * 28 26 25
50 50 H 1.09002 * 109.46716 * 299.99800 * 29 26 25
51 51 H 1.09000 * 109.47486 * 59.99718 * 29 26 25
52 52 H 1.09001 * 109.47362 * 180.02562 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6368 2.0472 -1.2984
5 1 1.0745 1.5114 -2.0487
6 6 2.0275 3.3492 -1.5288
7 7 2.7128 4.0016 -0.6153
8 14 1.5836 4.1866 -3.1386
9 1 0.2715 4.8675 -2.9970
10 1 2.6262 5.1874 -3.4799
11 1 1.5002 3.1707 -4.2185
12 6 1.9955 -0.7660 1.1375
13 1 3.0799 -0.6620 1.1740
14 6 1.6308 -2.2438 0.9692
15 6 2.0519 -3.0072 2.2350
16 1 1.9470 -4.0868 2.1272
17 6 3.4994 -2.5953 2.5719
18 6 3.3550 -1.3572 3.4815
19 6 1.8300 -1.1349 3.6048
20 1 1.5496 -0.7350 4.5792
21 6 1.3915 -0.2261 2.4454
22 7 1.2446 -2.4751 3.3593
23 6 0.2244 -3.0708 4.0082
24 8 -0.3338 -2.4951 4.9211
25 8 -0.1763 -4.3037 3.6447
26 6 -1.2805 -4.8837 4.3880
27 6 -2.5154 -3.9917 4.2458
28 6 -0.8986 -4.9944 5.8655
29 6 -1.5908 -6.2767 3.8362
30 1 -0.3633 0.4512 0.9233
31 1 -0.3634 0.5740 -0.8524
32 1 -0.3633 -1.0252 -0.0709
33 1 1.5611 1.9273 0.8310
34 1 3.0797 1.3445 0.1082
35 1 2.9873 4.9177 -0.7773
36 1 2.1541 -2.6529 0.1050
37 1 0.5549 -2.3420 0.8246
38 1 4.0444 -2.3376 1.6637
39 1 4.0078 -3.3996 3.1035
40 1 3.8290 -0.4904 3.0210
41 1 3.7905 -1.5531 4.4614
42 1 0.3041 -0.2273 2.3716
43 1 1.7460 0.7892 2.6232
44 1 -2.7875 -3.9129 3.1932
45 1 -2.2941 -2.9996 4.6391
46 1 -3.3445 -4.4274 4.8034
47 1 -1.7274 -5.4302 6.4232
48 1 -0.0189 -5.6299 5.9667
49 1 -0.6773 -4.0022 6.2588
50 1 -1.8627 -6.1981 2.7836
51 1 -0.7109 -6.9120 3.9377
52 1 -2.4200 -6.7120 4.3938
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255235462.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:08:57
Heat of formation + Delta-G solvation = -85.502404 kcal
Electronic energy + Delta-G solvation = -29985.635774 eV
Core-core repulsion = 26177.648045 eV
Total energy + Delta-G solvation = -3807.987729 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.36368 -41.11009 -38.28607 -37.51814 -35.13657 -34.73777 -32.67401 -32.46654
-31.45494 -28.97545 -28.36592 -28.27861 -27.23511 -25.44013 -25.18786 -23.66467
-22.20374 -21.52875 -20.75618 -19.75776 -18.76123 -18.47768 -17.60842 -17.49862
-16.97344 -16.56879 -16.31010 -15.50627 -15.43847 -15.37655 -14.94157 -14.82213
-14.67821 -14.52650 -14.26374 -13.97018 -13.85811 -13.60209 -13.32494 -13.26498
-13.05616 -13.01350 -12.88930 -12.85196 -12.63523 -12.62631 -12.51399 -12.35964
-12.31080 -12.26100 -12.03770 -11.98036 -11.63362 -11.38525 -11.33361 -11.25703
-11.18505 -11.02953 -10.60181 -9.84246 -8.93587 -8.18926 -6.28232 1.02694
1.41226 1.41846 1.53594 1.74703 2.40899 2.83779 3.13466 3.29190
3.48889 3.63334 3.76652 3.80649 3.92020 3.95865 3.99495 4.08109
4.13450 4.25222 4.34959 4.40253 4.43364 4.54261 4.59120 4.61461
4.65516 4.71324 4.76616 4.83180 4.84668 4.88747 4.91997 4.98419
4.99222 5.02501 5.09468 5.12127 5.16166 5.20695 5.25185 5.28278
5.31976 5.34107 5.41202 5.46716 5.49239 5.67350 6.08048 6.33920
6.52995 6.68129 6.88154 7.26256 7.41218 8.91666
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.020842 B = 0.003050 C = 0.002893
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1343.114576 B = 9178.264973 C = 9675.702307
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.040 3.960
2 N -0.538 5.538
3 C 0.212 3.788
4 C -0.524 4.524
5 H 0.061 0.939
6 C 0.003 3.997
7 N -0.933 5.933
8 Si 0.965 3.035
9 H -0.276 1.276
10 H -0.281 1.281
11 H -0.265 1.265
12 C 0.086 3.914
13 H 0.086 0.914
14 C -0.111 4.111
15 C 0.138 3.862
16 H 0.120 0.880
17 C -0.124 4.124
18 C -0.127 4.127
19 C 0.160 3.840
20 H 0.090 0.910
21 C -0.155 4.155
22 N -0.601 5.601
23 C 0.669 3.331
24 O -0.599 6.599
25 O -0.364 6.364
26 C 0.124 3.876
27 C -0.181 4.181
28 C -0.177 4.177
29 C -0.133 4.133
30 H 0.007 0.993
31 H 0.054 0.946
32 H 0.071 0.929
33 H -0.037 1.037
34 H 0.007 0.993
35 H 0.264 0.736
36 H 0.094 0.906
37 H 0.055 0.945
38 H 0.094 0.906
39 H 0.093 0.907
40 H 0.082 0.918
41 H 0.087 0.913
42 H 0.050 0.950
43 H 0.057 0.943
44 H 0.057 0.943
45 H 0.056 0.944
46 H 0.093 0.907
47 H 0.091 0.909
48 H 0.064 0.936
49 H 0.057 0.943
50 H 0.066 0.934
51 H 0.073 0.927
52 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.324 -22.048 10.408 24.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.108 4.108
2 N -0.260 5.260
3 C 0.085 3.915
4 C -0.562 4.562
5 H 0.079 0.921
6 C -0.195 4.195
7 N -0.573 5.573
8 Si 0.790 3.210
9 H -0.202 1.202
10 H -0.207 1.207
11 H -0.189 1.189
12 C -0.023 4.023
13 H 0.104 0.896
14 C -0.149 4.149
15 C 0.035 3.965
16 H 0.138 0.862
17 C -0.162 4.162
18 C -0.165 4.165
19 C 0.057 3.943
20 H 0.108 0.892
21 C -0.195 4.195
22 N -0.341 5.341
23 C 0.425 3.575
24 O -0.491 6.491
25 O -0.278 6.278
26 C 0.087 3.913
27 C -0.238 4.238
28 C -0.234 4.234
29 C -0.190 4.190
30 H 0.026 0.974
31 H 0.073 0.927
32 H 0.089 0.911
33 H -0.019 1.019
34 H 0.025 0.975
35 H 0.072 0.928
36 H 0.112 0.888
37 H 0.073 0.927
38 H 0.112 0.888
39 H 0.111 0.889
40 H 0.100 0.900
41 H 0.106 0.894
42 H 0.068 0.932
43 H 0.076 0.924
44 H 0.076 0.924
45 H 0.075 0.925
46 H 0.111 0.889
47 H 0.110 0.890
48 H 0.083 0.917
49 H 0.076 0.924
50 H 0.085 0.915
51 H 0.092 0.908
52 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -3.409 -22.065 10.328 24.600
hybrid contribution -0.677 1.824 0.184 1.954
sum -4.085 -20.241 10.511 23.171
Atomic orbital electron populations
1.22208 0.88675 1.00652 0.99286 1.62261 1.07442 1.15444 1.40861
1.19328 0.93675 0.83798 0.94652 1.21502 1.34671 0.97518 1.02547
0.92130 1.25858 0.95093 0.98074 1.00494 1.70074 1.39372 1.11808
1.36077 0.85447 0.77825 0.78186 0.79548 1.20187 1.20686 1.18881
1.22045 0.99588 0.93766 0.86867 0.89646 1.22075 1.01503 0.93360
0.97975 1.22418 0.90482 0.99272 0.84331 0.86173 1.22575 0.94896
0.97833 1.00911 1.22632 0.92681 0.99568 1.01666 1.22142 0.93751
0.80636 0.97774 0.89187 1.22810 1.00715 0.98954 0.97000 1.48033
1.32048 1.18251 1.35792 1.17574 0.79402 0.80403 0.80119 1.90876
1.58293 1.66849 1.33076 1.86311 1.51830 1.29144 1.60550 1.22434
0.83045 0.94147 0.91636 1.22478 0.97707 1.01019 1.02588 1.22452
1.03174 1.03199 0.94600 1.21869 1.03494 0.91325 1.02341 0.97436
0.92703 0.91058 1.01922 0.97465 0.92762 0.88781 0.92659 0.88789
0.88861 0.89956 0.89442 0.93179 0.92434 0.92434 0.92534 0.88861
0.89002 0.91652 0.92363 0.91462 0.90833 0.87866
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.61 8.64 127.69 1.10 2.71 16
2 N -0.54 -22.78 4.70 -899.65 -4.23 -27.01 16
3 C 0.21 11.11 4.30 85.56 0.37 11.47 16
4 C -0.52 -29.67 8.46 25.60 0.22 -29.45 16
5 H 0.06 3.38 7.12 -2.91 -0.02 3.36 16
6 C 0.00 0.16 5.46 84.65 0.46 0.62 16
7 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16
8 Si 0.97 44.41 29.54 68.60 2.03 46.44 16
9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16
10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16
11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16
12 C 0.09 2.88 1.83 45.25 0.08 2.96 16
13 H 0.09 2.82 5.32 -2.39 -0.01 2.81 16
14 C -0.11 -2.94 4.95 30.88 0.15 -2.78 16
15 C 0.14 3.03 4.13 45.30 0.19 3.21 16
16 H 0.12 2.23 7.93 -2.38 -0.02 2.21 16
17 C -0.12 -2.29 5.96 31.45 0.19 -2.11 16
18 C -0.13 -2.78 5.98 31.58 0.19 -2.59 16
19 C 0.16 4.48 4.12 45.43 0.19 4.66 16
20 H 0.09 2.67 7.93 -2.39 -0.02 2.65 16
21 C -0.15 -5.26 4.25 31.12 0.13 -5.12 16
22 N -0.60 -16.34 2.76 -887.72 -2.45 -18.78 16
23 C 0.67 19.97 8.03 129.79 1.04 21.01 16
24 O -0.60 -20.80 12.20 19.82 0.24 -20.56 16
25 O -0.36 -9.25 9.47 -55.48 -0.53 -9.77 16
26 C 0.12 2.48 1.13 -10.79 -0.01 2.47 16
27 C -0.18 -3.85 8.37 71.98 0.60 -3.25 16
28 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16
29 C -0.13 -1.71 8.85 71.98 0.64 -1.07 16
30 H 0.01 0.30 6.09 -2.39 -0.01 0.29 16
31 H 0.05 2.36 6.76 -2.39 -0.02 2.35 16
32 H 0.07 2.45 6.35 -2.39 -0.02 2.44 16
33 H -0.04 -2.12 7.21 -2.38 -0.02 -2.14 16
34 H 0.01 0.41 7.93 -2.39 -0.02 0.39 16
35 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16
36 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16
37 H 0.05 1.61 6.31 -2.39 -0.02 1.59 16
38 H 0.09 1.68 7.03 -2.38 -0.02 1.67 16
39 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16
40 H 0.08 1.94 7.05 -2.39 -0.02 1.92 16
41 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
42 H 0.05 1.89 6.02 -2.39 -0.01 1.87 16
43 H 0.06 2.19 7.24 -2.39 -0.02 2.18 16
44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
45 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16
46 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16
47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
49 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16
50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16
51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
52 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16
Total: -1.00 -68.89 383.88 2.39 -66.51
By element:
Atomic # 1 Polarization: 17.97 SS G_CDS: 0.89 Total: 18.87 kcal
Atomic # 6 Polarization: -6.17 SS G_CDS: 6.14 Total: -0.03 kcal
Atomic # 7 Polarization: -95.06 SS G_CDS: -6.39 Total: -101.46 kcal
Atomic # 8 Polarization: -30.05 SS G_CDS: -0.28 Total: -30.33 kcal
Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal
Total: -68.89 2.39 -66.51 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255235462.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.995 kcal
(2) G-P(sol) polarization free energy of solvation -68.893 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds