Wall clock time and date at job start Tue Mar 31 2020 14:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47449 * 2 1 4 4 C 1.53005 * 109.47337 * 239.99419 * 2 1 3 5 5 O 1.45200 * 109.46980 * 119.99736 * 2 1 3 6 6 C 1.34640 * 116.99969 * 59.99845 * 5 2 1 7 7 O 1.21511 * 119.99879 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00304 * 180.02562 * 6 5 2 9 9 C 1.47481 * 125.65864 * 0.04081 * 8 6 5 10 10 C 1.55016 * 104.90111 * 203.98344 * 9 8 6 11 11 C 1.54539 * 101.52379 * 323.61177 * 10 9 8 12 12 C 1.47182 * 125.66506 * 180.02562 * 8 6 5 13 13 C 1.52242 * 110.18255 * 276.38030 * 11 10 9 14 14 C 1.53130 * 109.56155 * 295.78276 * 13 11 10 15 15 C 1.53000 * 109.39617 * 301.15751 * 14 13 11 16 16 C 1.53013 * 109.58959 * 60.53933 * 15 14 13 17 17 H 1.09004 * 109.48324 * 59.44958 * 16 15 14 18 18 N 1.46490 * 109.48411 * 179.48221 * 16 15 14 19 19 C 1.36935 * 120.00121 * 274.99659 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.52241 * 110.18324 * 153.31998 * 11 10 9 28 28 H 1.08999 * 109.46824 * 300.00838 * 1 2 3 29 29 H 1.09000 * 109.46875 * 60.00206 * 1 2 3 30 30 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47201 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46913 * 299.99770 * 3 2 1 33 33 H 1.08998 * 109.47048 * 59.99767 * 3 2 1 34 34 H 1.08995 * 109.47214 * 300.00427 * 4 2 1 35 35 H 1.09000 * 109.46832 * 60.00348 * 4 2 1 36 36 H 1.08998 * 109.47349 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.35370 * 322.83735 * 9 8 6 38 38 H 1.08997 * 110.35480 * 85.01897 * 9 8 6 39 39 H 1.08998 * 111.01754 * 205.55494 * 10 9 8 40 40 H 1.09001 * 111.01922 * 81.67177 * 10 9 8 41 41 H 1.08998 * 109.90564 * 59.17483 * 12 8 6 42 42 H 1.08996 * 109.90602 * 297.91182 * 12 8 6 43 43 H 1.08999 * 109.45263 * 175.75957 * 13 11 10 44 44 H 1.08990 * 109.44182 * 55.80429 * 13 11 10 45 45 H 1.09001 * 109.48203 * 181.17844 * 14 13 11 46 46 H 1.08998 * 109.49467 * 61.14080 * 14 13 11 47 47 H 1.09001 * 109.45370 * 300.50381 * 15 14 13 48 48 H 1.09000 * 109.45511 * 180.57420 * 15 14 13 49 49 H 0.97000 * 120.00577 * 95.00258 * 18 16 15 50 50 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 51 51 H 1.09007 * 109.45043 * 304.18372 * 27 11 10 52 52 H 1.08994 * 109.45544 * 184.24066 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5041 8 7 2.0670 -2.6654 2.4173 9 6 2.9158 -2.1396 3.5027 10 6 3.5961 -3.3894 4.1177 11 6 2.4650 -4.4375 4.0173 12 6 1.7480 -4.0725 2.7080 13 6 1.5198 -4.3055 5.2035 14 6 2.2713 -4.6328 6.4969 15 6 2.8287 -6.0553 6.4146 16 6 3.7978 -6.1592 5.2351 17 1 4.6137 -5.4492 5.3713 18 7 4.3394 -7.5185 5.1659 19 6 5.4290 -7.8607 5.9214 20 1 5.8889 -7.1285 6.5686 21 6 5.9426 -9.1487 5.8555 22 7 5.3824 -10.0409 5.0664 23 14 7.4286 -9.6156 6.8867 24 1 7.7778 -11.0371 6.6365 25 1 8.5785 -8.7515 6.5173 26 1 7.1112 -9.4292 8.3253 27 6 3.0534 -5.8392 3.9358 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7218 -1.2490 37 1 3.6662 -1.4586 3.1012 38 1 2.3052 -1.6322 4.2496 39 1 3.8735 -3.2120 5.1568 40 1 4.4627 -3.6919 3.5298 41 1 2.1059 -4.7090 1.8987 42 1 0.6713 -4.1916 2.8289 43 1 0.6867 -4.9978 5.0826 44 1 1.1397 -3.2852 5.2527 45 1 1.5883 -4.5582 7.3431 46 1 3.0921 -3.9278 6.6290 47 1 2.0083 -6.7590 6.2734 48 1 3.3552 -6.2929 7.3389 49 1 3.9263 -8.1763 4.5850 50 1 4.6106 -9.7985 4.5313 51 1 3.7474 -5.8933 3.0969 52 1 2.2507 -6.5620 3.7898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257789302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:51 Heat of formation + Delta-G solvation = -83.669495 kcal Electronic energy + Delta-G solvation = -29125.253730 eV Core-core repulsion = 25317.345481 eV Total energy + Delta-G solvation = -3807.908248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08714 -40.01245 -37.39974 -36.12940 -34.41274 -33.92820 -31.47734 -31.12911 -29.76751 -27.81970 -27.68585 -27.62704 -26.02119 -23.80497 -23.13976 -22.13737 -21.70994 -20.26026 -19.58944 -18.59420 -17.77503 -17.11505 -16.81500 -16.54386 -15.67154 -15.35971 -15.04611 -14.55958 -14.20505 -14.03836 -13.93352 -13.74617 -13.71020 -13.56788 -13.09608 -12.78798 -12.65848 -12.56287 -12.53119 -12.35834 -12.15607 -12.12550 -11.99989 -11.61225 -11.50220 -11.39469 -11.22093 -10.91166 -10.75053 -10.67082 -10.60512 -10.56949 -10.22728 -10.13983 -10.04280 -9.89396 -9.77462 -9.11790 -8.87162 -8.82969 -7.01621 -6.08410 -3.08090 1.95006 2.73774 3.51723 3.55190 3.72535 3.72795 4.35164 4.44844 4.48922 4.50106 4.63482 4.64479 4.75016 5.05819 5.08992 5.18073 5.22291 5.23807 5.26048 5.39381 5.40556 5.45445 5.49202 5.51777 5.59224 5.59417 5.66422 5.68822 5.69679 5.72632 5.81526 5.86844 5.88976 5.94692 6.00808 6.03992 6.06735 6.11359 6.23030 6.25732 6.30495 6.36043 6.46850 6.51619 6.67614 6.91059 7.07020 7.37803 7.82268 8.22384 8.77276 9.25097 10.11382 10.26450 11.40068 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002513 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.064003 B =11137.336474 C =11480.946779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.666 3.334 7 O -0.570 6.570 8 N -0.601 5.601 9 C 0.104 3.896 10 C -0.126 4.126 11 C -0.061 4.061 12 C 0.136 3.864 13 C -0.102 4.102 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.188 3.812 17 H 0.049 0.951 18 N -0.737 5.737 19 C -0.328 4.328 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.945 5.945 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.296 1.296 26 H -0.296 1.296 27 C -0.109 4.109 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.366 0.634 50 H 0.255 0.745 51 H 0.065 0.935 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.192 23.163 -6.694 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.421 3.579 7 O -0.460 6.460 8 N -0.342 5.342 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.062 4.062 12 C 0.015 3.985 13 C -0.139 4.139 14 C -0.155 4.155 15 C -0.177 4.177 16 C 0.078 3.922 17 H 0.067 0.933 18 N -0.379 5.379 19 C -0.459 4.459 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.591 5.591 23 Si 0.909 3.091 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.223 1.223 27 C -0.147 4.147 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.199 0.801 50 H 0.066 0.934 51 H 0.084 0.916 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.259 22.003 -6.556 24.399 hybrid contribution -1.268 1.121 -0.556 1.782 sum -9.526 23.124 -7.113 26.001 Atomic orbital electron populations 1.22511 0.94062 1.05083 1.02342 1.22059 0.94341 0.91498 0.82248 1.21851 1.02279 0.92542 1.03027 1.22517 1.01606 1.03563 0.96395 1.86305 1.71580 1.23590 1.46262 1.17487 0.78840 0.80361 0.81180 1.90896 1.41595 1.70532 1.42958 1.47239 1.53109 1.12756 1.21107 1.22412 0.93423 0.97138 0.88863 1.22945 0.97714 0.93305 1.02392 1.21063 0.95312 0.96403 0.93416 1.22020 1.00100 0.79096 0.97283 1.21439 0.97497 1.00992 0.93997 1.21595 0.99283 0.98382 0.96221 1.22253 0.99668 0.94367 1.01363 1.20109 0.93159 0.88086 0.90834 0.93333 1.42444 1.35202 1.07696 1.52553 1.20011 1.06673 0.98207 1.20971 0.91857 1.25742 1.04486 0.92167 1.02012 1.70879 1.24032 1.35549 1.28592 0.83263 0.74879 0.76070 0.74858 1.21084 1.22320 1.22321 1.21724 0.99728 0.93432 0.99864 0.92260 0.91205 0.89367 0.91462 0.90180 0.91521 0.89345 0.91203 0.92160 0.90433 0.91276 0.88893 0.90086 0.90819 0.91108 0.91723 0.92317 0.92635 0.92108 0.92916 0.92098 0.80118 0.93376 0.91634 0.91953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 8.37 37.16 0.31 -1.42 16 2 C 0.14 1.33 1.13 -90.62 -0.10 1.23 16 3 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 4 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.36 -4.43 9.42 -40.32 -0.38 -4.81 16 6 C 0.67 9.24 7.93 54.06 0.43 9.67 16 7 O -0.57 -9.00 12.21 -19.28 -0.24 -9.24 16 8 N -0.60 -7.61 3.33 -176.46 -0.59 -8.20 16 9 C 0.10 1.09 6.60 -2.44 -0.02 1.08 16 10 C -0.13 -1.42 4.91 -24.86 -0.12 -1.54 16 11 C -0.06 -0.75 0.55 -154.12 -0.09 -0.83 16 12 C 0.14 1.72 6.05 -3.32 -0.02 1.70 16 13 C -0.10 -1.18 4.57 -27.05 -0.12 -1.30 16 14 C -0.12 -1.49 5.73 -26.66 -0.15 -1.64 16 15 C -0.14 -2.31 5.48 -26.72 -0.15 -2.46 16 16 C 0.19 3.52 2.59 -67.86 -0.18 3.35 16 17 H 0.05 0.94 7.34 -51.93 -0.38 0.56 16 18 N -0.74 -17.98 5.12 -53.36 -0.27 -18.26 16 19 C -0.33 -9.04 9.93 -15.06 -0.15 -9.19 16 20 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 21 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 22 N -0.94 -29.18 13.70 55.49 0.76 -28.42 16 23 Si 1.08 25.83 29.92 -169.99 -5.09 20.74 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.30 -6.76 7.11 56.52 0.40 -6.36 16 27 C -0.11 -1.69 4.02 -27.05 -0.11 -1.79 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 1.10 5.88 -51.93 -0.31 0.79 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 38 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 39 H 0.09 0.99 6.06 -51.93 -0.31 0.68 16 40 H 0.08 0.99 7.99 -51.93 -0.41 0.58 16 41 H 0.07 1.00 7.80 -51.93 -0.40 0.60 16 42 H 0.07 0.88 7.83 -51.93 -0.41 0.48 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.73 6.32 -51.93 -0.33 0.41 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.37 9.30 6.63 -40.82 -0.27 9.03 16 50 H 0.26 7.75 6.77 -40.82 -0.28 7.47 16 51 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 52 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -32.17 390.96 -9.14 -41.31 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -9.31 Total: 7.71 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 0.08 Total: -6.74 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.10 Total: -54.87 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.62 Total: -14.04 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.09 Total: 20.74 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.17 -9.14 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257789302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.361 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds