Wall clock time and date at job start Tue Mar 31 2020 14:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47449 * 2 1 4 4 C 1.53005 * 109.47337 * 239.99419 * 2 1 3 5 5 O 1.45200 * 109.46980 * 119.99736 * 2 1 3 6 6 C 1.34640 * 116.99969 * 59.99845 * 5 2 1 7 7 O 1.21511 * 119.99879 * 359.97438 * 6 5 2 8 8 N 1.34778 * 120.00304 * 180.02562 * 6 5 2 9 9 C 1.47481 * 125.65864 * 0.04081 * 8 6 5 10 10 C 1.55016 * 104.90111 * 203.98344 * 9 8 6 11 11 C 1.54539 * 101.52379 * 323.61177 * 10 9 8 12 12 C 1.47182 * 125.66506 * 180.02562 * 8 6 5 13 13 C 1.52242 * 110.18255 * 276.38030 * 11 10 9 14 14 C 1.53130 * 109.56155 * 295.78276 * 13 11 10 15 15 C 1.53000 * 109.39617 * 301.15751 * 14 13 11 16 16 C 1.53013 * 109.58959 * 60.53933 * 15 14 13 17 17 H 1.09004 * 109.48324 * 59.44958 * 16 15 14 18 18 N 1.46490 * 109.48411 * 179.48221 * 16 15 14 19 19 C 1.36935 * 120.00121 * 274.99659 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.52241 * 110.18324 * 153.31998 * 11 10 9 28 28 H 1.08999 * 109.46824 * 300.00838 * 1 2 3 29 29 H 1.09000 * 109.46875 * 60.00206 * 1 2 3 30 30 H 1.08995 * 109.47317 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47201 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46913 * 299.99770 * 3 2 1 33 33 H 1.08998 * 109.47048 * 59.99767 * 3 2 1 34 34 H 1.08995 * 109.47214 * 300.00427 * 4 2 1 35 35 H 1.09000 * 109.46832 * 60.00348 * 4 2 1 36 36 H 1.08998 * 109.47349 * 180.02562 * 4 2 1 37 37 H 1.08999 * 110.35370 * 322.83735 * 9 8 6 38 38 H 1.08997 * 110.35480 * 85.01897 * 9 8 6 39 39 H 1.08998 * 111.01754 * 205.55494 * 10 9 8 40 40 H 1.09001 * 111.01922 * 81.67177 * 10 9 8 41 41 H 1.08998 * 109.90564 * 59.17483 * 12 8 6 42 42 H 1.08996 * 109.90602 * 297.91182 * 12 8 6 43 43 H 1.08999 * 109.45263 * 175.75957 * 13 11 10 44 44 H 1.08990 * 109.44182 * 55.80429 * 13 11 10 45 45 H 1.09001 * 109.48203 * 181.17844 * 14 13 11 46 46 H 1.08998 * 109.49467 * 61.14080 * 14 13 11 47 47 H 1.09001 * 109.45370 * 300.50381 * 15 14 13 48 48 H 1.09000 * 109.45511 * 180.57420 * 15 14 13 49 49 H 0.97000 * 120.00577 * 95.00258 * 18 16 15 50 50 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 51 51 H 1.09007 * 109.45043 * 304.18372 * 27 11 10 52 52 H 1.08994 * 109.45544 * 184.24066 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9507 -2.5094 0.5041 8 7 2.0670 -2.6654 2.4173 9 6 2.9158 -2.1396 3.5027 10 6 3.5961 -3.3894 4.1177 11 6 2.4650 -4.4375 4.0173 12 6 1.7480 -4.0725 2.7080 13 6 1.5198 -4.3055 5.2035 14 6 2.2713 -4.6328 6.4969 15 6 2.8287 -6.0553 6.4146 16 6 3.7978 -6.1592 5.2351 17 1 4.6137 -5.4492 5.3713 18 7 4.3394 -7.5185 5.1659 19 6 5.4290 -7.8607 5.9214 20 1 5.8889 -7.1285 6.5686 21 6 5.9426 -9.1487 5.8555 22 7 5.3824 -10.0409 5.0664 23 14 7.4286 -9.6156 6.8867 24 1 7.7778 -11.0371 6.6365 25 1 8.5785 -8.7515 6.5173 26 1 7.1112 -9.4292 8.3253 27 6 3.0534 -5.8392 3.9358 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2491 35 1 1.6768 -0.2076 -2.1392 36 1 3.1300 -0.7218 -1.2490 37 1 3.6662 -1.4586 3.1012 38 1 2.3052 -1.6322 4.2496 39 1 3.8735 -3.2120 5.1568 40 1 4.4627 -3.6919 3.5298 41 1 2.1059 -4.7090 1.8987 42 1 0.6713 -4.1916 2.8289 43 1 0.6867 -4.9978 5.0826 44 1 1.1397 -3.2852 5.2527 45 1 1.5883 -4.5582 7.3431 46 1 3.0921 -3.9278 6.6290 47 1 2.0083 -6.7590 6.2734 48 1 3.3552 -6.2929 7.3389 49 1 3.9263 -8.1763 4.5850 50 1 4.6106 -9.7985 4.5313 51 1 3.7474 -5.8933 3.0969 52 1 2.2507 -6.5620 3.7898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257789302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:50 Heat of formation + Delta-G solvation = -102.430981 kcal Electronic energy + Delta-G solvation = -29126.067289 eV Core-core repulsion = 25317.345481 eV Total energy + Delta-G solvation = -3808.721807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08413 -41.06201 -38.49175 -37.38306 -35.89489 -34.97735 -33.05999 -32.41104 -30.76833 -29.47668 -28.37745 -28.29518 -27.14448 -25.61971 -24.35988 -23.24554 -22.82465 -21.55414 -20.53302 -19.77413 -19.30885 -18.54346 -17.77621 -17.50039 -17.03650 -16.37125 -16.05414 -15.88693 -15.61133 -15.41571 -15.31923 -14.94215 -14.81098 -14.64380 -14.07099 -13.97860 -13.70680 -13.60219 -13.34857 -13.26545 -13.04008 -12.90953 -12.87204 -12.82425 -12.67572 -12.50699 -12.45395 -12.29208 -12.18548 -12.05944 -11.91111 -11.76554 -11.52122 -11.41091 -11.31602 -11.19038 -11.10121 -10.93648 -10.77865 -9.82697 -9.07553 -8.35825 -5.28989 1.02243 1.58305 1.68440 1.70331 1.84358 2.72869 2.85732 3.30899 3.42644 3.49525 3.59887 3.74708 3.79170 3.86919 3.94119 4.12366 4.16477 4.22380 4.25970 4.39547 4.45953 4.47959 4.55702 4.58834 4.60553 4.61998 4.69429 4.72170 4.73245 4.75439 4.83166 4.85459 4.87434 4.92500 5.04469 5.07674 5.13580 5.15061 5.21043 5.27049 5.28850 5.30240 5.34224 5.41338 5.44317 5.51653 5.62150 5.67910 6.38479 6.52311 7.13864 7.21371 8.04286 8.16286 9.16330 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002513 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.064003 B =11137.336474 C =11480.946779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.364 6.364 6 C 0.661 3.339 7 O -0.596 6.596 8 N -0.604 5.604 9 C 0.108 3.892 10 C -0.123 4.123 11 C -0.051 4.051 12 C 0.140 3.860 13 C -0.096 4.096 14 C -0.107 4.107 15 C -0.128 4.128 16 C 0.184 3.816 17 H 0.046 0.954 18 N -0.753 5.753 19 C -0.321 4.321 20 H 0.067 0.933 21 C -0.110 4.110 22 N -0.980 5.980 23 Si 1.125 2.875 24 H -0.296 1.296 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.098 4.098 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.036 0.964 49 H 0.356 0.644 50 H 0.243 0.757 51 H 0.050 0.950 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.410 26.478 -5.870 28.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.238 4.238 5 O -0.278 6.278 6 C 0.417 3.583 7 O -0.488 6.488 8 N -0.344 5.344 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.052 4.052 12 C 0.018 3.982 13 C -0.133 4.133 14 C -0.144 4.144 15 C -0.169 4.169 16 C 0.076 3.924 17 H 0.064 0.936 18 N -0.394 5.394 19 C -0.452 4.452 20 H 0.085 0.915 21 C -0.301 4.301 22 N -0.629 5.629 23 Si 0.950 3.050 24 H -0.222 1.222 25 H -0.204 1.204 26 H -0.204 1.204 27 C -0.137 4.137 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.187 0.813 50 H 0.053 0.947 51 H 0.069 0.931 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.492 25.397 -5.716 27.382 hybrid contribution -1.235 0.152 -0.875 1.521 sum -9.726 25.549 -6.591 28.121 Atomic orbital electron populations 1.22458 0.93858 1.03516 1.03701 1.22453 0.94728 0.92784 0.81353 1.21873 1.02369 0.90375 1.04455 1.22479 1.01506 1.02095 0.97690 1.86315 1.71535 1.22601 1.47387 1.17664 0.78689 0.80898 0.81088 1.90890 1.42774 1.71208 1.43903 1.47310 1.53150 1.12597 1.21386 1.22523 0.93556 0.96661 0.88561 1.22924 0.96801 0.93270 1.03054 1.20916 0.95945 0.94393 0.93936 1.21891 1.00235 0.79306 0.96737 1.21417 0.96911 1.02538 0.92467 1.21528 1.00100 0.95211 0.97609 1.22085 0.98501 0.97405 0.98867 1.20347 0.93669 0.85182 0.93199 0.93644 1.42720 1.34913 1.09711 1.52087 1.20346 1.06783 0.98058 1.20048 0.91520 1.27150 1.07110 0.92751 1.03080 1.70991 1.24828 1.36512 1.30535 0.82656 0.72524 0.75361 0.74419 1.22217 1.20355 1.20362 1.21554 0.98940 0.95696 0.97477 0.91763 0.88979 0.92294 0.91333 0.87863 0.90974 0.92396 0.88890 0.92214 0.89595 0.89103 0.87565 0.91454 0.92511 0.90693 0.91755 0.89716 0.90764 0.90724 0.94068 0.94532 0.81256 0.94678 0.93144 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 8.37 71.98 0.60 -2.50 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.20 16 3 C -0.13 -1.47 8.85 71.98 0.64 -0.84 16 4 C -0.18 -3.38 8.37 71.98 0.60 -2.77 16 5 O -0.36 -8.37 9.42 -55.50 -0.52 -8.90 16 6 C 0.66 17.92 7.93 129.79 1.03 18.95 16 7 O -0.60 -19.10 12.21 19.80 0.24 -18.86 16 8 N -0.60 -14.50 3.33 -942.61 -3.14 -17.64 16 9 C 0.11 1.98 6.60 86.88 0.57 2.56 16 10 C -0.12 -2.53 4.91 31.81 0.16 -2.37 16 11 C -0.05 -1.18 0.55 -51.93 -0.03 -1.21 16 12 C 0.14 3.44 6.05 86.48 0.52 3.96 16 13 C -0.10 -1.95 4.57 30.39 0.14 -1.81 16 14 C -0.11 -2.42 5.73 30.64 0.18 -2.25 16 15 C -0.13 -4.29 5.48 30.60 0.17 -4.12 16 16 C 0.18 6.92 2.59 45.04 0.12 7.04 16 17 H 0.05 1.74 7.34 -2.39 -0.02 1.73 16 18 N -0.75 -37.74 5.12 -322.73 -1.65 -39.39 16 19 C -0.32 -17.93 9.93 84.03 0.83 -17.09 16 20 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 21 C -0.11 -6.45 5.50 84.86 0.47 -5.98 16 22 N -0.98 -62.25 13.70 21.65 0.30 -61.96 16 23 Si 1.13 52.27 29.92 68.60 2.05 54.32 16 24 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 27 C -0.10 -3.07 4.02 30.39 0.12 -2.95 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.46 5.88 -2.39 -0.01 1.45 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.47 8.05 -2.39 -0.02 1.45 16 38 H 0.09 1.33 7.73 -2.39 -0.02 1.31 16 39 H 0.11 1.93 6.06 -2.39 -0.01 1.92 16 40 H 0.07 1.59 7.99 -2.39 -0.02 1.57 16 41 H 0.06 1.58 7.80 -2.39 -0.02 1.57 16 42 H 0.07 1.79 7.83 -2.39 -0.02 1.78 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.38 7.44 -2.39 -0.02 1.36 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.53 6.32 -2.39 -0.02 1.51 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.36 18.94 6.63 -92.71 -0.61 18.33 16 50 H 0.24 15.40 6.77 -92.71 -0.63 14.77 16 51 H 0.05 1.71 8.10 -2.38 -0.02 1.70 16 52 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -71.96 390.96 3.79 -68.16 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.42 Total: 33.45 kcal Atomic # 6 Polarization: -15.29 SS G_CDS: 6.11 Total: -9.19 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -4.50 Total: -118.99 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.28 Total: -27.76 kcal Atomic # 14 Polarization: 52.27 SS G_CDS: 2.05 Total: 54.32 kcal Total: -71.96 3.79 -68.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257789302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.267 kcal (2) G-P(sol) polarization free energy of solvation -71.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds