Wall clock time and date at job start Tue Mar 31 2020 15:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99688 * 2 1 4 4 H 1.07997 * 119.99663 * 141.73058 * 3 2 1 5 5 C 1.38811 * 120.00052 * 321.72562 * 3 2 1 6 6 N 1.31624 * 119.99823 * 159.73487 * 5 3 2 7 7 Si 1.86799 * 120.00006 * 339.73516 * 5 3 2 8 8 H 1.48501 * 109.47212 * 95.70811 * 7 5 3 9 9 H 1.48497 * 109.46996 * 215.70618 * 7 5 3 10 10 H 1.48501 * 109.47161 * 335.70723 * 7 5 3 11 11 C 1.46498 * 120.00300 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.48559 * 296.49924 * 11 2 1 13 13 C 1.52928 * 109.50894 * 180.16513 * 12 11 2 14 14 H 1.08998 * 109.44164 * 180.21460 * 13 12 11 15 15 C 1.52974 * 109.66052 * 300.27956 * 13 12 11 16 16 C 1.52976 * 109.77316 * 59.24509 * 15 13 12 17 17 H 1.08996 * 109.44372 * 180.80660 * 16 15 13 18 18 C 1.52923 * 109.65812 * 300.75329 * 16 15 13 19 19 C 1.53159 * 109.43517 * 60.88158 * 16 15 13 20 20 N 1.46925 * 108.79621 * 305.56165 * 19 16 15 21 21 C 1.34779 * 120.64525 * 233.71976 * 20 19 16 22 22 O 1.21508 * 120.00582 * 5.12506 * 21 20 19 23 23 O 1.34637 * 119.99685 * 185.12578 * 21 20 19 24 24 C 1.45206 * 117.00181 * 174.15586 * 23 21 20 25 25 C 1.52999 * 109.46880 * 61.36466 * 24 23 21 26 26 C 1.53002 * 109.47112 * 181.36654 * 24 23 21 27 27 C 1.52999 * 109.46835 * 301.36568 * 24 23 21 28 28 C 1.46916 * 118.69933 * 53.73879 * 20 19 16 29 29 H 1.08999 * 109.47030 * 270.54656 * 1 2 3 30 30 H 1.09003 * 109.47313 * 30.54308 * 1 2 3 31 31 H 1.08996 * 109.47171 * 150.54661 * 1 2 3 32 32 H 0.97001 * 119.99778 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.48321 * 176.45982 * 11 2 1 34 34 H 1.09002 * 109.46826 * 60.15870 * 12 11 2 35 35 H 1.09002 * 109.46256 * 300.17554 * 12 11 2 36 36 H 1.08996 * 109.42404 * 299.14891 * 15 13 12 37 37 H 1.09005 * 109.42130 * 179.33141 * 15 13 12 38 38 H 1.09000 * 109.46423 * 179.73180 * 18 16 15 39 39 H 1.09000 * 109.46880 * 299.70722 * 18 16 15 40 40 H 1.09004 * 109.58045 * 65.35467 * 19 16 15 41 41 H 1.08995 * 109.58237 * 185.76035 * 19 16 15 42 42 H 1.08990 * 109.47281 * 66.36755 * 25 24 23 43 43 H 1.09002 * 109.46431 * 186.36573 * 25 24 23 44 44 H 1.08996 * 109.47231 * 306.36193 * 25 24 23 45 45 H 1.08990 * 109.47015 * 59.99586 * 26 24 23 46 46 H 1.08997 * 109.46824 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.46630 * 299.99773 * 26 24 23 48 48 H 1.08998 * 109.47451 * 59.99592 * 27 24 23 49 49 H 1.08997 * 109.47420 * 180.02562 * 27 24 23 50 50 H 1.09005 * 109.46890 * 299.99830 * 27 24 23 51 51 H 1.09003 * 109.58714 * 186.46372 * 28 20 19 52 52 H 1.09005 * 109.70012 * 66.12126 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0555 1.2865 0.5793 5 6 1.6793 2.2589 -0.7446 6 7 2.0711 3.4820 -0.4565 7 14 0.4905 1.9669 -2.1556 8 1 -0.9020 2.1639 -1.6785 9 1 0.7784 2.9262 -3.2520 10 1 0.6498 0.5786 -2.6579 11 6 2.1975 -1.2687 0.0006 12 6 1.8954 -2.0319 1.2917 13 6 2.6631 -3.3545 1.2947 14 1 2.4441 -3.8990 2.2132 15 6 2.2408 -4.1974 0.0900 16 6 2.5291 -3.4328 -1.2032 17 1 2.2132 -4.0320 -2.0571 18 6 1.7617 -2.1101 -1.2008 19 6 4.0313 -3.1521 -1.3052 20 7 4.4680 -2.4620 -0.0838 21 6 5.1324 -1.2916 -0.1562 22 8 5.2943 -0.7504 -1.2320 23 8 5.6167 -0.7221 0.9635 24 6 6.4324 0.4677 0.7982 25 6 5.6009 1.5681 0.1360 26 6 6.9165 0.9485 2.1677 27 6 7.6393 0.1401 -0.0832 28 6 4.1666 -3.0730 1.2178 29 1 -0.3633 0.0098 1.0276 30 1 -0.3634 0.8851 -0.5222 31 1 -0.3633 -0.8948 -0.5053 32 1 1.7427 4.2317 -0.9771 33 1 3.2675 -1.0707 -0.0630 34 1 0.8258 -2.2327 1.3532 35 1 2.2022 -1.4319 2.1485 36 1 1.1742 -4.4122 0.1539 37 1 2.7988 -5.1338 0.0894 38 1 1.9731 -1.5658 -2.1212 39 1 0.6923 -2.3106 -1.1350 40 1 4.5726 -4.0928 -1.4068 41 1 4.2269 -2.5205 -2.1717 42 1 4.8065 1.8807 0.8135 43 1 6.2413 2.4205 -0.0909 44 1 5.1628 1.1871 -0.7865 45 1 7.5087 0.1645 2.6395 46 1 7.5284 1.8419 2.0437 47 1 6.0565 1.1818 2.7956 48 1 7.2945 -0.2025 -1.0588 49 1 8.2520 1.0331 -0.2069 50 1 8.2317 -0.6439 0.3887 51 1 4.4516 -2.3891 2.0173 52 1 4.7189 -4.0070 1.3220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257850199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:30 Heat of formation + Delta-G solvation = -38.132039 kcal Electronic energy + Delta-G solvation = -32224.095837 eV Core-core repulsion = 28418.162241 eV Total energy + Delta-G solvation = -3805.933596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.22979 -39.38563 -36.54911 -35.55045 -33.95061 -33.00837 -32.38807 -31.53407 -29.17992 -27.12198 -26.79143 -26.14036 -25.89414 -25.46209 -23.23784 -21.93261 -21.20075 -19.95923 -19.08153 -18.26340 -17.61748 -16.61847 -16.16165 -15.59612 -15.24185 -15.02720 -14.60348 -14.23041 -14.08625 -13.81252 -13.71804 -13.42870 -13.22098 -13.10522 -13.00842 -12.51202 -12.33253 -12.20525 -12.13080 -11.88565 -11.75298 -11.59966 -11.50527 -11.31201 -11.08194 -11.06872 -10.95487 -10.81073 -10.62759 -10.59576 -10.42157 -10.14419 -9.91410 -9.78012 -9.71749 -9.60122 -9.43425 -9.32931 -8.35198 -8.04841 -6.61362 -5.84123 -3.24716 2.51082 3.29415 3.39995 3.55791 3.62115 4.15965 4.65670 4.80491 4.85973 4.89758 5.13312 5.15472 5.17256 5.31346 5.36174 5.36727 5.48282 5.55972 5.60294 5.73436 5.78032 5.79746 5.83009 5.85851 5.92184 5.94418 5.95844 6.04150 6.13264 6.21756 6.22391 6.27308 6.31614 6.34724 6.41391 6.47304 6.50429 6.54267 6.64297 6.66803 6.76429 6.81473 6.82591 6.91540 7.14493 7.19230 7.33849 7.72447 8.22346 8.57042 8.78884 9.16603 9.88138 10.30421 11.31315 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.008138 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.090370 B = 3439.780465 C = 5220.835945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.607 5.607 3 C -0.256 4.256 4 H 0.085 0.915 5 C 0.033 3.967 6 N -0.904 5.904 7 Si 0.882 3.118 8 H -0.292 1.292 9 H -0.306 1.306 10 H -0.271 1.271 11 C 0.157 3.843 12 C -0.123 4.123 13 C -0.102 4.102 14 H 0.076 0.924 15 C -0.104 4.104 16 C -0.101 4.101 17 H 0.076 0.924 18 C -0.128 4.128 19 C 0.135 3.865 20 N -0.596 5.596 21 C 0.664 3.336 22 O -0.556 6.556 23 O -0.362 6.362 24 C 0.137 3.863 25 C -0.178 4.178 26 C -0.138 4.138 27 C -0.179 4.179 28 C 0.120 3.880 29 H 0.011 0.989 30 H 0.038 0.962 31 H 0.028 0.972 32 H 0.259 0.741 33 H 0.097 0.903 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.067 0.933 50 H 0.052 0.948 51 H 0.090 0.910 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.839 -15.046 3.638 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.329 5.329 3 C -0.384 4.384 4 H 0.102 0.898 5 C -0.166 4.166 6 N -0.547 5.547 7 Si 0.714 3.286 8 H -0.221 1.221 9 H -0.235 1.235 10 H -0.196 1.196 11 C 0.050 3.950 12 C -0.162 4.162 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.142 4.142 16 C -0.121 4.121 17 H 0.095 0.905 18 C -0.167 4.167 19 C 0.013 3.987 20 N -0.338 5.338 21 C 0.420 3.580 22 O -0.444 6.444 23 O -0.277 6.277 24 C 0.100 3.900 25 C -0.235 4.235 26 C -0.195 4.195 27 C -0.237 4.237 28 C -0.002 4.002 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.109 0.891 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.949 -14.574 3.291 16.478 hybrid contribution -0.990 0.027 -0.892 1.333 sum 5.958 -14.547 2.400 15.902 Atomic orbital electron populations 1.21257 0.85880 0.98372 0.97788 1.44188 1.00076 1.02141 1.86545 1.18932 1.09584 0.86921 1.23009 0.89783 1.25455 0.98154 0.95483 0.97523 1.69836 1.46803 0.97829 1.40188 0.86864 0.80157 0.77644 0.83967 1.22070 1.23490 1.19643 1.21137 0.98557 0.85137 0.90195 1.22033 0.98955 0.94425 1.00810 1.21472 0.94848 0.97564 0.98249 0.90597 1.21459 1.01157 0.97284 0.94289 1.21482 0.94979 0.97767 0.97903 0.90545 1.22086 0.98806 0.94507 1.01320 1.21595 0.93961 0.96218 0.86899 1.46976 1.57895 1.20756 1.08123 1.17609 0.77109 0.80581 0.82676 1.90921 1.62303 1.62229 1.28957 1.86241 1.64362 1.43079 1.34027 1.22101 0.89137 0.82318 0.96401 1.22562 1.00147 0.96449 1.04353 1.21828 1.01742 1.00936 0.94973 1.22484 0.97219 1.01980 1.01987 1.21682 0.95366 0.98259 0.84943 0.97111 0.94375 0.95342 0.93094 0.88531 0.92893 0.92124 0.91847 0.92278 0.92057 0.92882 0.91754 0.88600 0.90423 0.92489 0.88540 0.92276 0.90470 0.91245 0.89823 0.91371 0.92912 0.89128 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.57 8.73 59.85 0.52 3.09 16 2 N -0.61 -14.87 2.37 -173.49 -0.41 -15.28 16 3 C -0.26 -7.24 9.84 -15.06 -0.15 -7.39 16 4 H 0.08 2.53 5.73 -52.49 -0.30 2.22 16 5 C 0.03 0.98 5.34 -17.43 -0.09 0.89 16 6 N -0.90 -27.85 13.97 55.49 0.78 -27.07 16 7 Si 0.88 23.56 24.91 -169.99 -4.23 19.32 16 8 H -0.29 -7.63 6.71 56.52 0.38 -7.25 16 9 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 10 H -0.27 -7.17 7.11 56.52 0.40 -6.77 16 11 C 0.16 3.19 2.25 -67.93 -0.15 3.04 16 12 C -0.12 -2.08 4.77 -26.77 -0.13 -2.21 16 13 C -0.10 -1.30 3.18 -90.59 -0.29 -1.58 16 14 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.10 -1.21 5.17 -26.76 -0.14 -1.35 16 16 C -0.10 -1.38 3.18 -90.59 -0.29 -1.67 16 17 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.13 -2.33 4.63 -26.77 -0.12 -2.45 16 19 C 0.13 1.89 5.76 -3.73 -0.02 1.87 16 20 N -0.60 -9.31 1.65 -178.61 -0.29 -9.60 16 21 C 0.66 12.40 5.11 54.06 0.28 12.68 16 22 O -0.56 -11.88 11.28 -19.28 -0.22 -12.09 16 23 O -0.36 -6.49 8.55 -40.32 -0.34 -6.84 16 24 C 0.14 2.28 1.13 -90.62 -0.10 2.18 16 25 C -0.18 -3.61 8.02 37.16 0.30 -3.32 16 26 C -0.14 -1.86 8.85 37.16 0.33 -1.53 16 27 C -0.18 -2.65 8.35 37.16 0.31 -2.34 16 28 C 0.12 1.56 5.75 -3.73 -0.02 1.54 16 29 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.95 3.18 -51.93 -0.17 0.79 16 31 H 0.03 0.58 6.25 -51.93 -0.32 0.25 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.10 2.08 2.54 -51.93 -0.13 1.94 16 34 H 0.05 0.89 7.76 -51.93 -0.40 0.49 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.95 6.56 -51.93 -0.34 0.61 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.55 7.00 -51.93 -0.36 1.18 16 42 H 0.08 1.79 6.38 -51.93 -0.33 1.46 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.10 2.30 5.65 -51.93 -0.29 2.01 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.08 1.42 5.99 -51.93 -0.31 1.11 16 49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.09 1.25 6.96 -51.93 -0.36 0.89 16 52 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -32.59 368.16 -7.77 -40.37 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.82 Total: 4.20 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 0.23 Total: 1.45 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.07 Total: -51.96 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.56 Total: -18.93 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.23 Total: 19.32 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.59 -7.77 -40.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257850199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.234 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds