Wall clock time and date at job start Tue Mar 31 2020 15:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36942 * 119.99688 * 2 1 4 4 H 1.07997 * 119.99663 * 141.73058 * 3 2 1 5 5 C 1.38811 * 120.00052 * 321.72562 * 3 2 1 6 6 N 1.31624 * 119.99823 * 159.73487 * 5 3 2 7 7 Si 1.86799 * 120.00006 * 339.73516 * 5 3 2 8 8 H 1.48501 * 109.47212 * 95.70811 * 7 5 3 9 9 H 1.48497 * 109.46996 * 215.70618 * 7 5 3 10 10 H 1.48501 * 109.47161 * 335.70723 * 7 5 3 11 11 C 1.46498 * 120.00300 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.48559 * 296.49924 * 11 2 1 13 13 C 1.52928 * 109.50894 * 180.16513 * 12 11 2 14 14 H 1.08998 * 109.44164 * 180.21460 * 13 12 11 15 15 C 1.52974 * 109.66052 * 300.27956 * 13 12 11 16 16 C 1.52976 * 109.77316 * 59.24509 * 15 13 12 17 17 H 1.08996 * 109.44372 * 180.80660 * 16 15 13 18 18 C 1.52923 * 109.65812 * 300.75329 * 16 15 13 19 19 C 1.53159 * 109.43517 * 60.88158 * 16 15 13 20 20 N 1.46925 * 108.79621 * 305.56165 * 19 16 15 21 21 C 1.34779 * 120.64525 * 233.71976 * 20 19 16 22 22 O 1.21508 * 120.00582 * 5.12506 * 21 20 19 23 23 O 1.34637 * 119.99685 * 185.12578 * 21 20 19 24 24 C 1.45206 * 117.00181 * 174.15586 * 23 21 20 25 25 C 1.52999 * 109.46880 * 61.36466 * 24 23 21 26 26 C 1.53002 * 109.47112 * 181.36654 * 24 23 21 27 27 C 1.52999 * 109.46835 * 301.36568 * 24 23 21 28 28 C 1.46916 * 118.69933 * 53.73879 * 20 19 16 29 29 H 1.08999 * 109.47030 * 270.54656 * 1 2 3 30 30 H 1.09003 * 109.47313 * 30.54308 * 1 2 3 31 31 H 1.08996 * 109.47171 * 150.54661 * 1 2 3 32 32 H 0.97001 * 119.99778 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.48321 * 176.45982 * 11 2 1 34 34 H 1.09002 * 109.46826 * 60.15870 * 12 11 2 35 35 H 1.09002 * 109.46256 * 300.17554 * 12 11 2 36 36 H 1.08996 * 109.42404 * 299.14891 * 15 13 12 37 37 H 1.09005 * 109.42130 * 179.33141 * 15 13 12 38 38 H 1.09000 * 109.46423 * 179.73180 * 18 16 15 39 39 H 1.09000 * 109.46880 * 299.70722 * 18 16 15 40 40 H 1.09004 * 109.58045 * 65.35467 * 19 16 15 41 41 H 1.08995 * 109.58237 * 185.76035 * 19 16 15 42 42 H 1.08990 * 109.47281 * 66.36755 * 25 24 23 43 43 H 1.09002 * 109.46431 * 186.36573 * 25 24 23 44 44 H 1.08996 * 109.47231 * 306.36193 * 25 24 23 45 45 H 1.08990 * 109.47015 * 59.99586 * 26 24 23 46 46 H 1.08997 * 109.46824 * 180.02562 * 26 24 23 47 47 H 1.09002 * 109.46630 * 299.99773 * 26 24 23 48 48 H 1.08998 * 109.47451 * 59.99592 * 27 24 23 49 49 H 1.08997 * 109.47420 * 180.02562 * 27 24 23 50 50 H 1.09005 * 109.46890 * 299.99830 * 27 24 23 51 51 H 1.09003 * 109.58714 * 186.46372 * 28 20 19 52 52 H 1.09005 * 109.70012 * 66.12126 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.0555 1.2865 0.5793 5 6 1.6793 2.2589 -0.7446 6 7 2.0711 3.4820 -0.4565 7 14 0.4905 1.9669 -2.1556 8 1 -0.9020 2.1639 -1.6785 9 1 0.7784 2.9262 -3.2520 10 1 0.6498 0.5786 -2.6579 11 6 2.1975 -1.2687 0.0006 12 6 1.8954 -2.0319 1.2917 13 6 2.6631 -3.3545 1.2947 14 1 2.4441 -3.8990 2.2132 15 6 2.2408 -4.1974 0.0900 16 6 2.5291 -3.4328 -1.2032 17 1 2.2132 -4.0320 -2.0571 18 6 1.7617 -2.1101 -1.2008 19 6 4.0313 -3.1521 -1.3052 20 7 4.4680 -2.4620 -0.0838 21 6 5.1324 -1.2916 -0.1562 22 8 5.2943 -0.7504 -1.2320 23 8 5.6167 -0.7221 0.9635 24 6 6.4324 0.4677 0.7982 25 6 5.6009 1.5681 0.1360 26 6 6.9165 0.9485 2.1677 27 6 7.6393 0.1401 -0.0832 28 6 4.1666 -3.0730 1.2178 29 1 -0.3633 0.0098 1.0276 30 1 -0.3634 0.8851 -0.5222 31 1 -0.3633 -0.8948 -0.5053 32 1 1.7427 4.2317 -0.9771 33 1 3.2675 -1.0707 -0.0630 34 1 0.8258 -2.2327 1.3532 35 1 2.2022 -1.4319 2.1485 36 1 1.1742 -4.4122 0.1539 37 1 2.7988 -5.1338 0.0894 38 1 1.9731 -1.5658 -2.1212 39 1 0.6923 -2.3106 -1.1350 40 1 4.5726 -4.0928 -1.4068 41 1 4.2269 -2.5205 -2.1717 42 1 4.8065 1.8807 0.8135 43 1 6.2413 2.4205 -0.0909 44 1 5.1628 1.1871 -0.7865 45 1 7.5087 0.1645 2.6395 46 1 7.5284 1.8419 2.0437 47 1 6.0565 1.1818 2.7956 48 1 7.2945 -0.2025 -1.0588 49 1 8.2520 1.0331 -0.2069 50 1 8.2317 -0.6439 0.3887 51 1 4.4516 -2.3891 2.0173 52 1 4.7189 -4.0070 1.3220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257850199.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:29 Heat of formation + Delta-G solvation = -57.970720 kcal Electronic energy + Delta-G solvation = -32224.956106 eV Core-core repulsion = 28418.162241 eV Total energy + Delta-G solvation = -3806.793866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.52579 -40.71320 -38.03021 -37.26155 -35.33978 -34.45063 -33.54504 -33.50782 -30.76007 -28.41130 -28.27323 -27.88738 -27.32619 -26.57049 -25.08110 -23.24542 -22.41123 -21.49181 -20.52405 -19.62668 -18.93879 -18.63530 -17.56998 -17.24395 -16.89675 -16.53231 -15.98299 -15.61483 -15.36443 -15.08931 -15.02817 -14.87169 -14.73522 -14.55327 -14.37292 -14.26649 -14.03316 -13.90129 -13.34650 -13.28743 -13.12232 -12.91068 -12.82104 -12.80850 -12.77912 -12.56762 -12.42570 -12.33301 -12.16667 -11.99727 -11.77824 -11.69059 -11.66040 -11.47126 -11.23870 -11.11222 -10.96817 -10.81103 -10.52431 -9.28087 -8.63623 -8.14077 -5.49846 1.20784 1.25794 1.33165 1.43666 1.89472 2.41493 2.96388 3.13799 3.37437 3.70559 3.82042 3.85283 3.87338 4.02462 4.06429 4.11696 4.24873 4.33117 4.47254 4.50166 4.51770 4.60275 4.64814 4.65422 4.69975 4.73750 4.80005 4.80936 4.85610 4.87981 4.92274 4.94146 4.95035 4.95985 4.98062 5.04033 5.13515 5.16620 5.30535 5.34258 5.36253 5.39773 5.54255 5.57676 5.61528 5.67926 5.73772 6.02638 6.30183 6.41767 7.07858 7.41476 7.72183 8.14809 9.05059 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009926 B = 0.008138 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.090370 B = 3439.780465 C = 5220.835945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.623 5.623 3 C -0.237 4.237 4 H 0.054 0.946 5 C -0.023 4.023 6 N -0.946 5.946 7 Si 0.938 3.062 8 H -0.279 1.279 9 H -0.316 1.316 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.115 4.115 13 C -0.094 4.094 14 H 0.112 0.888 15 C -0.097 4.097 16 C -0.094 4.094 17 H 0.105 0.895 18 C -0.123 4.123 19 C 0.130 3.870 20 N -0.592 5.592 21 C 0.653 3.347 22 O -0.595 6.595 23 O -0.366 6.366 24 C 0.132 3.868 25 C -0.164 4.164 26 C -0.131 4.131 27 C -0.170 4.170 28 C 0.115 3.885 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.020 0.980 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -19.550 4.577 21.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.347 5.347 3 C -0.367 4.367 4 H 0.072 0.928 5 C -0.218 4.218 6 N -0.592 5.592 7 Si 0.769 3.231 8 H -0.207 1.207 9 H -0.246 1.246 10 H -0.194 1.194 11 C 0.037 3.963 12 C -0.154 4.154 13 C -0.114 4.114 14 H 0.130 0.870 15 C -0.134 4.134 16 C -0.114 4.114 17 H 0.123 0.877 18 C -0.163 4.163 19 C 0.009 3.991 20 N -0.333 5.333 21 C 0.410 3.590 22 O -0.486 6.486 23 O -0.281 6.281 24 C 0.096 3.904 25 C -0.222 4.222 26 C -0.188 4.188 27 C -0.227 4.227 28 C -0.007 4.007 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.038 0.962 39 H 0.076 0.924 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.116 0.884 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.105 0.895 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.178 -19.154 4.255 20.892 hybrid contribution -1.044 1.425 -1.128 2.096 sum 6.134 -17.728 3.127 19.018 Atomic orbital electron populations 1.21266 0.84883 0.98661 0.98392 1.44412 1.00949 1.02541 1.86808 1.18863 1.08208 0.88451 1.21146 0.92821 1.25982 1.00657 0.95394 0.99763 1.69956 1.49232 0.98498 1.41479 0.85936 0.79073 0.77020 0.81029 1.20662 1.24577 1.19449 1.21420 0.97612 0.84125 0.93188 1.21897 0.99932 0.96229 0.97389 1.21500 0.93640 0.95329 1.00896 0.87049 1.21476 1.02562 0.97915 0.91463 1.21502 0.93553 0.95471 1.00856 0.87674 1.21974 0.99843 0.96473 0.97963 1.21792 0.95053 0.97048 0.85212 1.47199 1.56635 1.19609 1.09875 1.17969 0.77499 0.81324 0.82239 1.90900 1.63914 1.63492 1.30272 1.86242 1.64692 1.43223 1.33935 1.22284 0.88948 0.80816 0.98398 1.22357 0.99694 0.98361 1.01745 1.21831 1.01650 1.02618 0.92669 1.22382 0.96493 1.03574 1.00214 1.21951 0.96250 0.99460 0.83020 0.96198 0.96453 0.92531 0.93445 0.89914 0.92504 0.94675 0.90754 0.88210 0.96152 0.92355 0.87381 0.91867 0.94367 0.91254 0.92618 0.89536 0.88450 0.92825 0.92488 0.89475 0.90443 0.90641 0.87588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.13 8.73 127.77 1.12 6.25 16 2 N -0.62 -31.38 2.37 -702.79 -1.66 -33.04 16 3 C -0.24 -14.17 9.84 84.03 0.83 -13.34 16 4 H 0.05 3.51 5.73 -2.91 -0.02 3.50 16 5 C -0.02 -1.40 5.34 84.86 0.45 -0.95 16 6 N -0.95 -61.72 13.97 21.65 0.30 -61.42 16 7 Si 0.94 50.81 24.91 68.60 1.71 52.52 16 8 H -0.28 -14.35 6.71 99.48 0.67 -13.68 16 9 H -0.32 -17.47 7.11 99.48 0.71 -16.76 16 10 H -0.27 -14.31 7.11 99.48 0.71 -13.60 16 11 C 0.14 5.80 2.25 44.99 0.10 5.90 16 12 C -0.12 -3.72 4.77 30.57 0.15 -3.58 16 13 C -0.09 -1.98 3.18 -10.77 -0.03 -2.02 16 14 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 15 C -0.10 -1.67 5.17 30.58 0.16 -1.51 16 16 C -0.09 -2.22 3.18 -10.77 -0.03 -2.25 16 17 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 18 C -0.12 -4.36 4.63 30.57 0.14 -4.22 16 19 C 0.13 3.33 5.76 86.35 0.50 3.83 16 20 N -0.59 -17.61 1.65 -949.40 -1.56 -19.17 16 21 C 0.65 25.02 5.11 129.79 0.66 25.68 16 22 O -0.59 -27.03 11.28 19.82 0.22 -26.80 16 23 O -0.37 -13.45 8.55 -55.47 -0.47 -13.93 16 24 C 0.13 4.51 1.13 -10.79 -0.01 4.50 16 25 C -0.16 -7.23 8.02 71.98 0.58 -6.65 16 26 C -0.13 -3.44 8.85 71.98 0.64 -2.80 16 27 C -0.17 -4.93 8.35 71.98 0.60 -4.33 16 28 C 0.11 2.57 5.75 86.35 0.50 3.07 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.02 0.86 3.18 -2.39 -0.01 0.85 16 31 H 0.06 2.23 6.25 -2.39 -0.01 2.21 16 32 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 33 H 0.08 3.67 2.54 -2.39 -0.01 3.67 16 34 H 0.06 1.77 7.76 -2.39 -0.02 1.75 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.96 6.56 -2.39 -0.02 1.94 16 40 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.06 7.00 -2.39 -0.02 2.04 16 42 H 0.04 1.93 6.38 -2.39 -0.02 1.91 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 44 H 0.05 2.91 5.65 -2.39 -0.01 2.89 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.06 1.99 5.99 -2.39 -0.01 1.98 16 49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 51 H 0.08 1.95 6.96 -2.39 -0.02 1.93 16 52 H 0.11 1.56 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -79.66 368.16 5.73 -73.92 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.86 Total: 20.33 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 6.33 Total: 7.59 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -2.92 Total: -113.63 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.25 Total: -40.73 kcal Atomic # 14 Polarization: 50.81 SS G_CDS: 1.71 Total: 52.52 kcal Total: -79.66 5.73 -73.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257850199.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.953 kcal (2) G-P(sol) polarization free energy of solvation -79.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds