Wall clock time and date at job start Tue Mar 31 2020 13:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 114.00297 * 2 1 4 4 C 1.52995 * 109.46872 * 59.99708 * 3 2 1 5 5 C 1.53001 * 109.46818 * 300.00040 * 3 2 1 6 6 C 1.52994 * 109.47253 * 180.02562 * 3 2 1 7 7 N 1.46904 * 109.47169 * 296.50178 * 6 3 2 8 8 C 1.47659 * 111.00188 * 75.50187 * 7 6 3 9 9 C 1.54520 * 107.05149 * 123.12615 * 8 7 6 10 10 C 1.54887 * 102.59482 * 23.00474 * 9 8 7 11 11 H 1.08992 * 110.41755 * 80.14771 * 10 9 8 12 12 C 1.48269 * 111.00311 * 196.07224 * 7 6 3 13 13 H 1.09008 * 112.05728 * 92.36144 * 12 7 6 14 14 C 1.53119 * 108.11175 * 329.40219 * 12 7 6 15 15 C 1.52888 * 109.33346 * 182.69891 * 14 12 7 16 16 C 1.50344 * 109.30687 * 52.84367 * 15 14 12 17 17 O 1.21282 * 118.79583 * 158.35124 * 16 15 14 18 18 N 1.33346 * 122.40203 * 338.35610 * 16 15 14 19 19 C 1.46502 * 117.28793 * 179.76508 * 18 16 15 20 20 C 1.52997 * 109.47319 * 269.99935 * 19 18 16 21 21 C 1.50701 * 109.46777 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00433 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99626 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47108 * 89.99841 * 25 23 21 27 27 H 1.48505 * 109.47287 * 210.00087 * 25 23 21 28 28 H 1.48507 * 109.47045 * 329.99856 * 25 23 21 29 29 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46897 * 300.00173 * 1 2 3 31 31 H 1.08999 * 109.46774 * 59.99699 * 1 2 3 32 32 H 1.09004 * 109.46894 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47671 * 300.00414 * 4 3 2 34 34 H 1.09003 * 109.47166 * 60.00621 * 4 3 2 35 35 H 1.09001 * 109.47011 * 305.66508 * 5 3 2 36 36 H 1.08996 * 109.47162 * 65.65822 * 5 3 2 37 37 H 1.08992 * 109.47017 * 185.66062 * 5 3 2 38 38 H 1.08996 * 109.47205 * 176.50293 * 6 3 2 39 39 H 1.08999 * 109.47629 * 56.49414 * 6 3 2 40 40 H 1.08998 * 109.91701 * 3.77103 * 8 7 6 41 41 H 1.08999 * 109.91503 * 242.47417 * 8 7 6 42 42 H 1.09001 * 110.78690 * 264.72758 * 9 8 7 43 43 H 1.09004 * 110.78498 * 141.27802 * 9 8 7 44 44 H 1.09006 * 109.49191 * 302.65618 * 14 12 7 45 45 H 1.09001 * 109.49950 * 62.73679 * 14 12 7 46 46 H 1.09001 * 109.50432 * 172.80262 * 15 14 12 47 47 H 1.09002 * 109.49601 * 292.90099 * 15 14 12 48 48 H 1.09000 * 109.46881 * 30.00680 * 19 18 16 49 49 H 1.09007 * 109.46607 * 149.99684 * 19 18 16 50 50 H 1.08995 * 109.47049 * 300.00295 * 20 19 18 51 51 H 1.09004 * 109.46770 * 60.00224 * 20 19 18 52 52 H 0.96994 * 119.99922 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 -0.0006 7 7 3.9753 0.5296 1.2385 8 6 3.7108 -0.9223 1.1923 9 6 5.0618 -1.6365 1.4213 10 6 5.8919 -0.5593 2.1625 11 1 5.6257 -0.5345 3.2191 12 6 5.4271 0.7328 1.4606 13 1 5.6285 1.6114 2.0735 14 6 6.1071 0.8423 0.0930 15 6 7.6167 0.9853 0.2883 16 6 8.1121 -0.1299 1.1665 17 8 9.2862 -0.4308 1.1222 18 7 7.3078 -0.8004 1.9921 19 6 7.9082 -1.8700 2.7932 20 6 7.8297 -3.1896 2.0229 21 6 8.4467 -4.2899 2.8473 22 1 8.8538 -4.0701 3.8231 23 6 8.4916 -5.5772 2.3556 24 7 7.9963 -5.8448 1.1669 25 14 9.2558 -6.9413 3.3776 26 1 8.2115 -7.5674 4.2276 27 1 9.8410 -7.9665 2.4766 28 1 10.3227 -6.3744 4.2412 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.0019 3.0607 1.2490 33 1 0.4722 2.1508 1.2492 34 1 1.8805 1.5238 2.1392 35 1 1.7911 1.4754 -2.1363 36 1 0.4840 2.2387 -1.2000 37 1 2.0797 3.0207 -1.3014 38 1 3.9787 2.1784 -0.0633 39 1 3.8526 0.5906 -0.8577 40 1 3.3069 -1.1953 0.2174 41 1 3.0077 -1.1969 1.9787 42 1 5.5274 -1.8975 0.4709 43 1 4.9310 -2.5209 2.0449 44 1 5.8990 -0.0552 -0.4896 45 1 5.7242 1.7159 -0.4347 46 1 8.1152 0.9351 -0.6797 47 1 7.8333 1.9436 0.7604 48 1 8.9517 -1.6295 2.9967 49 1 7.3673 -1.9660 3.7347 50 1 6.7862 -3.4299 1.8195 51 1 8.3706 -3.0934 1.0814 52 1 8.0283 -6.7504 0.8209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273809749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:05 Heat of formation + Delta-G solvation = -72.070035 kcal Electronic energy + Delta-G solvation = -29928.815845 eV Core-core repulsion = 26121.410587 eV Total energy + Delta-G solvation = -3807.405258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.99839 -39.35578 -38.00260 -35.29113 -33.80412 -33.11865 -32.69760 -30.50823 -29.16565 -28.16364 -27.62051 -27.08698 -25.28812 -24.90000 -23.50437 -21.85044 -21.00434 -20.51936 -19.70740 -17.88598 -16.87673 -16.43883 -16.31691 -16.13015 -15.94667 -15.40930 -15.17185 -14.80362 -14.47140 -14.39119 -13.99841 -13.72255 -13.51601 -13.32052 -12.97694 -12.74896 -12.58915 -12.51422 -12.38133 -12.29016 -12.17019 -11.72082 -11.65740 -11.53632 -11.52207 -11.43166 -11.22673 -11.06821 -10.89481 -10.73694 -10.63265 -10.51960 -10.34775 -9.76854 -9.76185 -9.70639 -9.28218 -8.95111 -8.33679 -8.28965 -7.98549 -5.96317 -3.98468 3.11865 3.34848 3.40222 3.42632 3.46779 3.59820 3.91488 4.45444 4.50532 4.50589 4.68401 4.77218 4.83890 4.84918 4.92523 5.11891 5.18786 5.21396 5.25891 5.29821 5.34575 5.39172 5.39952 5.42629 5.48208 5.49720 5.56350 5.57919 5.63810 5.74447 5.78303 5.81924 5.87840 5.91041 6.10091 6.16943 6.21769 6.23067 6.43086 6.46773 6.63427 6.87922 6.90393 6.97039 7.03489 7.12281 7.70913 7.80407 8.05224 8.12651 8.42680 8.72602 9.08183 9.64750 11.15095 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003361 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.587638 B = 8327.742476 C = 9508.039581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.371 6.371 3 C 0.115 3.885 4 C -0.166 4.166 5 C -0.178 4.178 6 C 0.064 3.936 7 N -0.515 5.515 8 C 0.053 3.947 9 C -0.154 4.154 10 C 0.145 3.855 11 H 0.093 0.907 12 C 0.066 3.934 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.132 4.132 16 C 0.510 3.490 17 O -0.548 6.548 18 N -0.588 5.588 19 C 0.108 3.892 20 C 0.014 3.986 21 C -0.518 4.518 22 H 0.055 0.945 23 C 0.059 3.941 24 N -0.894 5.894 25 Si 0.893 3.107 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.061 0.939 50 H 0.022 0.978 51 H 0.019 0.981 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 19.026 -3.259 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.290 6.290 3 C 0.075 3.925 4 C -0.223 4.223 5 C -0.236 4.236 6 C -0.064 4.064 7 N -0.238 5.238 8 C -0.075 4.075 9 C -0.193 4.193 10 C 0.039 3.961 11 H 0.111 0.889 12 C -0.042 4.042 13 H 0.118 0.882 14 C -0.187 4.187 15 C -0.173 4.173 16 C 0.298 3.702 17 O -0.426 6.426 18 N -0.319 5.319 19 C -0.013 4.013 20 C -0.024 4.024 21 C -0.557 4.557 22 H 0.073 0.927 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.720 3.280 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.198 1.198 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.114 0.886 47 H 0.112 0.888 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.040 0.960 51 H 0.037 0.963 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.174 18.810 -3.005 24.989 hybrid contribution 0.471 -1.021 -0.299 1.163 sum -15.703 17.789 -3.304 23.957 Atomic orbital electron populations 1.22738 0.82080 1.02423 0.99780 1.88043 1.18996 1.27036 1.94961 1.21528 0.93215 0.83551 0.94182 1.22251 1.00210 1.00573 0.99270 1.22405 1.01803 1.00962 0.98443 1.22324 0.92324 0.99839 0.91921 1.63745 1.14036 1.12066 1.33995 1.22897 0.96537 0.85550 1.02513 1.23370 0.95102 0.99052 1.01809 1.21538 0.80654 0.93843 1.00061 0.88907 1.22851 0.87362 0.98331 0.95691 0.88203 1.22316 0.94965 1.03117 0.98349 1.21588 0.96353 0.98352 1.00965 1.19963 0.86189 0.83389 0.80677 1.90733 1.17021 1.67599 1.67259 1.47083 1.07788 1.35404 1.41633 1.21943 0.98221 0.87694 0.93437 1.19408 0.97568 0.89437 0.95952 1.21116 1.38776 0.92948 1.02877 0.92657 1.24982 0.95531 0.98749 0.95003 1.69972 1.46033 1.20215 1.17070 0.86587 0.79509 0.81805 0.80055 1.20695 1.21263 1.19840 0.89986 0.93908 0.94312 0.92136 0.93275 0.90113 0.91817 0.92144 0.91500 0.89587 0.93280 0.91277 0.90429 0.90777 0.89514 0.90835 0.90500 0.88556 0.88824 0.90732 0.92074 0.95996 0.96299 0.93071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.21 101.05 1.03 1.24 16 2 O -0.37 -3.82 7.86 -35.23 -0.28 -4.10 16 3 C 0.11 0.99 0.89 -90.62 -0.08 0.91 16 4 C -0.17 -1.33 8.06 37.15 0.30 -1.03 16 5 C -0.18 -1.24 8.07 37.16 0.30 -0.94 16 6 C 0.06 0.59 2.76 -3.82 -0.01 0.58 16 7 N -0.52 -5.55 4.20 -223.09 -0.94 -6.48 16 8 C 0.05 0.66 5.62 -2.61 -0.01 0.65 16 9 C -0.15 -2.35 4.68 -24.94 -0.12 -2.47 16 10 C 0.14 2.10 3.17 -67.30 -0.21 1.89 16 11 H 0.09 1.29 8.04 -51.93 -0.42 0.88 16 12 C 0.07 0.75 3.46 -66.26 -0.23 0.52 16 13 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 14 C -0.15 -1.65 3.94 -26.73 -0.11 -1.76 16 15 C -0.13 -1.72 6.08 -28.11 -0.17 -1.89 16 16 C 0.51 9.51 7.47 -11.79 -0.09 9.42 16 17 O -0.55 -12.85 16.20 5.56 0.09 -12.76 16 18 N -0.59 -10.66 2.51 -166.16 -0.42 -11.08 16 19 C 0.11 2.35 5.06 -4.04 -0.02 2.33 16 20 C 0.01 0.38 5.07 -27.88 -0.14 0.23 16 21 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 22 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 25 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.31 6.42 -51.93 -0.33 -0.03 16 31 H 0.04 0.26 6.55 -51.93 -0.34 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.36 6.54 -51.93 -0.34 0.02 16 34 H 0.08 0.78 7.51 -51.93 -0.39 0.39 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.38 6.86 -51.93 -0.36 0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.67 6.88 -51.93 -0.36 0.31 16 39 H 0.05 0.50 6.93 -51.93 -0.36 0.14 16 40 H 0.07 0.91 6.20 -51.93 -0.32 0.59 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 1.30 7.38 -51.93 -0.38 0.92 16 43 H 0.09 1.47 7.42 -51.93 -0.39 1.09 16 44 H 0.07 0.95 6.59 -51.93 -0.34 0.61 16 45 H 0.08 0.66 6.24 -51.93 -0.32 0.34 16 46 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.07 1.76 7.14 -51.93 -0.37 1.39 16 49 H 0.06 1.22 7.92 -51.92 -0.41 0.81 16 50 H 0.02 0.59 6.14 -51.93 -0.32 0.27 16 51 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 52 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 384.10 15.07 5.79 5.79 Total: -1.00 -33.46 384.10 -9.11 -42.57 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -9.10 Total: -0.42 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 0.03 Total: -4.00 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.62 Total: -44.19 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.19 Total: -16.85 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.46 -9.11 -42.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273809749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.504 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds