Wall clock time and date at job start Tue Mar 31 2020 13:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 114.00297 * 2 1 4 4 C 1.52995 * 109.46872 * 59.99708 * 3 2 1 5 5 C 1.53001 * 109.46818 * 300.00040 * 3 2 1 6 6 C 1.52994 * 109.47253 * 180.02562 * 3 2 1 7 7 N 1.46904 * 109.47169 * 296.50178 * 6 3 2 8 8 C 1.47659 * 111.00188 * 75.50187 * 7 6 3 9 9 C 1.54520 * 107.05149 * 123.12615 * 8 7 6 10 10 C 1.54887 * 102.59482 * 23.00474 * 9 8 7 11 11 H 1.08992 * 110.41755 * 80.14771 * 10 9 8 12 12 C 1.48269 * 111.00311 * 196.07224 * 7 6 3 13 13 H 1.09008 * 112.05728 * 92.36144 * 12 7 6 14 14 C 1.53119 * 108.11175 * 329.40219 * 12 7 6 15 15 C 1.52888 * 109.33346 * 182.69891 * 14 12 7 16 16 C 1.50344 * 109.30687 * 52.84367 * 15 14 12 17 17 O 1.21282 * 118.79583 * 158.35124 * 16 15 14 18 18 N 1.33346 * 122.40203 * 338.35610 * 16 15 14 19 19 C 1.46502 * 117.28793 * 179.76508 * 18 16 15 20 20 C 1.52997 * 109.47319 * 269.99935 * 19 18 16 21 21 C 1.50701 * 109.46777 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00433 * 0.02562 * 21 20 19 23 23 C 1.37878 * 119.99626 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47108 * 89.99841 * 25 23 21 27 27 H 1.48505 * 109.47287 * 210.00087 * 25 23 21 28 28 H 1.48507 * 109.47045 * 329.99856 * 25 23 21 29 29 H 1.09003 * 109.47150 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46897 * 300.00173 * 1 2 3 31 31 H 1.08999 * 109.46774 * 59.99699 * 1 2 3 32 32 H 1.09004 * 109.46894 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47671 * 300.00414 * 4 3 2 34 34 H 1.09003 * 109.47166 * 60.00621 * 4 3 2 35 35 H 1.09001 * 109.47011 * 305.66508 * 5 3 2 36 36 H 1.08996 * 109.47162 * 65.65822 * 5 3 2 37 37 H 1.08992 * 109.47017 * 185.66062 * 5 3 2 38 38 H 1.08996 * 109.47205 * 176.50293 * 6 3 2 39 39 H 1.08999 * 109.47629 * 56.49414 * 6 3 2 40 40 H 1.08998 * 109.91701 * 3.77103 * 8 7 6 41 41 H 1.08999 * 109.91503 * 242.47417 * 8 7 6 42 42 H 1.09001 * 110.78690 * 264.72758 * 9 8 7 43 43 H 1.09004 * 110.78498 * 141.27802 * 9 8 7 44 44 H 1.09006 * 109.49191 * 302.65618 * 14 12 7 45 45 H 1.09001 * 109.49950 * 62.73679 * 14 12 7 46 46 H 1.09001 * 109.50432 * 172.80262 * 15 14 12 47 47 H 1.09002 * 109.49601 * 292.90099 * 15 14 12 48 48 H 1.09000 * 109.46881 * 30.00680 * 19 18 16 49 49 H 1.09007 * 109.46607 * 149.99684 * 19 18 16 50 50 H 1.08995 * 109.47049 * 300.00295 * 20 19 18 51 51 H 1.09004 * 109.46770 * 60.00224 * 20 19 18 52 52 H 0.96994 * 119.99922 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 -0.0006 7 7 3.9753 0.5296 1.2385 8 6 3.7108 -0.9223 1.1923 9 6 5.0618 -1.6365 1.4213 10 6 5.8919 -0.5593 2.1625 11 1 5.6257 -0.5345 3.2191 12 6 5.4271 0.7328 1.4606 13 1 5.6285 1.6114 2.0735 14 6 6.1071 0.8423 0.0930 15 6 7.6167 0.9853 0.2883 16 6 8.1121 -0.1299 1.1665 17 8 9.2862 -0.4308 1.1222 18 7 7.3078 -0.8004 1.9921 19 6 7.9082 -1.8700 2.7932 20 6 7.8297 -3.1896 2.0229 21 6 8.4467 -4.2899 2.8473 22 1 8.8538 -4.0701 3.8231 23 6 8.4916 -5.5772 2.3556 24 7 7.9963 -5.8448 1.1669 25 14 9.2558 -6.9413 3.3776 26 1 8.2115 -7.5674 4.2276 27 1 9.8410 -7.9665 2.4766 28 1 10.3227 -6.3744 4.2412 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.0019 3.0607 1.2490 33 1 0.4722 2.1508 1.2492 34 1 1.8805 1.5238 2.1392 35 1 1.7911 1.4754 -2.1363 36 1 0.4840 2.2387 -1.2000 37 1 2.0797 3.0207 -1.3014 38 1 3.9787 2.1784 -0.0633 39 1 3.8526 0.5906 -0.8577 40 1 3.3069 -1.1953 0.2174 41 1 3.0077 -1.1969 1.9787 42 1 5.5274 -1.8975 0.4709 43 1 4.9310 -2.5209 2.0449 44 1 5.8990 -0.0552 -0.4896 45 1 5.7242 1.7159 -0.4347 46 1 8.1152 0.9351 -0.6797 47 1 7.8333 1.9436 0.7604 48 1 8.9517 -1.6295 2.9967 49 1 7.3673 -1.9660 3.7347 50 1 6.7862 -3.4299 1.8195 51 1 8.3706 -3.0934 1.0814 52 1 8.0283 -6.7504 0.8209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273809749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:04 Heat of formation + Delta-G solvation = -94.465833 kcal Electronic energy + Delta-G solvation = -29929.786999 eV Core-core repulsion = 26121.410587 eV Total energy + Delta-G solvation = -3808.376413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20317 -40.33480 -39.08665 -36.83454 -35.31566 -34.38440 -34.02743 -31.89825 -30.76983 -29.24201 -28.19544 -27.78829 -26.93728 -26.02861 -24.75794 -23.53856 -22.24478 -21.82779 -20.46165 -19.17209 -18.53585 -17.97237 -17.53750 -17.16131 -16.95418 -16.63565 -16.40916 -16.00371 -15.89868 -15.53049 -15.09693 -14.75584 -14.73971 -14.43358 -14.26980 -14.24361 -13.73340 -13.67548 -13.45736 -13.34913 -13.13595 -13.00778 -12.84582 -12.73623 -12.67336 -12.56815 -12.41888 -12.24176 -12.20767 -12.06049 -11.96768 -11.77406 -11.70683 -11.48705 -11.37966 -11.15867 -10.59322 -10.55123 -10.34722 -9.61912 -9.23975 -8.23420 -6.35410 1.36638 1.39469 1.50344 1.64901 2.06627 2.39802 2.93600 2.98197 3.09818 3.40847 3.54085 3.69246 3.84005 3.94937 4.10791 4.16498 4.19566 4.26009 4.28751 4.36452 4.41259 4.45590 4.57149 4.61623 4.63137 4.69366 4.72673 4.77313 4.80546 4.84149 4.85384 4.88185 4.94566 4.98173 5.00336 5.06491 5.09495 5.19262 5.26172 5.29741 5.32082 5.37093 5.47823 5.60583 5.61220 5.81439 5.93751 6.10572 6.17729 6.49374 6.62718 6.79931 7.23850 7.33586 8.88580 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.003361 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.587638 B = 8327.742476 C = 9508.039581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.398 6.398 3 C 0.111 3.889 4 C -0.160 4.160 5 C -0.174 4.174 6 C 0.060 3.940 7 N -0.505 5.505 8 C 0.071 3.929 9 C -0.151 4.151 10 C 0.137 3.863 11 H 0.105 0.895 12 C 0.077 3.923 13 H 0.129 0.871 14 C -0.142 4.142 15 C -0.119 4.119 16 C 0.497 3.503 17 O -0.606 6.606 18 N -0.586 5.586 19 C 0.122 3.878 20 C 0.029 3.971 21 C -0.544 4.544 22 H 0.062 0.938 23 C 0.001 3.999 24 N -0.932 5.932 25 Si 0.969 3.031 26 H -0.265 1.265 27 H -0.283 1.283 28 H -0.265 1.265 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.118 0.882 46 H 0.100 0.900 47 H 0.130 0.870 48 H 0.053 0.947 49 H 0.082 0.918 50 H 0.010 0.990 51 H -0.032 1.032 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.950 21.477 -2.544 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C 0.071 3.929 4 C -0.218 4.218 5 C -0.232 4.232 6 C -0.068 4.068 7 N -0.228 5.228 8 C -0.057 4.057 9 C -0.191 4.191 10 C 0.033 3.967 11 H 0.123 0.877 12 C -0.031 4.031 13 H 0.147 0.853 14 C -0.180 4.180 15 C -0.159 4.159 16 C 0.288 3.712 17 O -0.489 6.489 18 N -0.315 5.315 19 C -0.001 4.001 20 C -0.009 4.009 21 C -0.582 4.582 22 H 0.080 0.920 23 C -0.197 4.197 24 N -0.572 5.572 25 Si 0.793 3.207 26 H -0.191 1.191 27 H -0.209 1.209 28 H -0.189 1.189 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.136 0.864 46 H 0.118 0.882 47 H 0.148 0.852 48 H 0.072 0.928 49 H 0.100 0.900 50 H 0.028 0.972 51 H -0.014 1.014 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.607 21.291 -2.287 27.723 hybrid contribution 0.867 -1.815 -0.570 2.091 sum -16.740 19.476 -2.857 25.840 Atomic orbital electron populations 1.22824 0.81076 1.02747 1.00597 1.88005 1.20251 1.28363 1.95168 1.21645 0.92633 0.83241 0.95348 1.22193 1.00732 1.00822 0.98012 1.22363 1.02447 1.01267 0.97082 1.22491 0.93191 1.00669 0.90445 1.63845 1.13413 1.10381 1.35160 1.22671 0.94356 0.86680 1.02025 1.23231 0.97124 0.98939 0.99795 1.21831 0.78174 0.95567 1.01168 0.87714 1.22904 0.87408 0.97089 0.95709 0.85300 1.22323 0.93571 1.03824 0.98299 1.21604 0.97378 0.97097 0.99866 1.21148 0.85462 0.84192 0.80432 1.90700 1.19668 1.69599 1.68920 1.47099 1.09322 1.34075 1.40987 1.21488 0.97879 0.86674 0.94014 1.19183 0.95659 0.92000 0.94050 1.21568 1.39182 0.94021 1.03472 0.91981 1.25994 0.95822 1.01660 0.96236 1.70119 1.47116 1.21040 1.18940 0.85397 0.78913 0.78066 0.78368 1.19055 1.20867 1.18908 0.90060 0.93255 0.93236 0.90758 0.92664 0.91806 0.92637 0.91486 0.89844 0.86873 0.94343 0.92055 0.90364 0.93904 0.92090 0.93280 0.86421 0.88185 0.85218 0.92806 0.89992 0.97197 1.01384 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.21 113.37 1.16 1.50 16 2 O -0.40 -7.68 7.86 -148.98 -1.17 -8.85 16 3 C 0.11 1.62 0.89 -10.80 -0.01 1.61 16 4 C -0.16 -2.08 8.06 71.98 0.58 -1.50 16 5 C -0.17 -1.91 8.07 71.98 0.58 -1.33 16 6 C 0.06 0.93 2.76 86.30 0.24 1.17 16 7 N -0.51 -9.71 4.20 -859.74 -3.61 -13.32 16 8 C 0.07 1.76 5.62 86.67 0.49 2.25 16 9 C -0.15 -4.85 4.68 31.76 0.15 -4.71 16 10 C 0.14 3.92 3.17 46.40 0.15 4.07 16 11 H 0.11 2.79 8.04 -2.39 -0.02 2.77 16 12 C 0.08 1.54 3.46 45.10 0.16 1.70 16 13 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 14 C -0.14 -2.78 3.94 30.60 0.12 -2.66 16 15 C -0.12 -2.87 6.08 29.70 0.18 -2.69 16 16 C 0.50 18.85 7.47 87.77 0.66 19.50 16 17 O -0.61 -29.75 16.20 -3.04 -0.05 -29.80 16 18 N -0.59 -21.74 2.51 -798.79 -2.01 -23.75 16 19 C 0.12 5.56 5.06 86.38 0.44 6.00 16 20 C 0.03 1.64 5.07 29.85 0.15 1.79 16 21 C -0.54 -32.58 9.11 25.60 0.23 -32.35 16 22 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 23 C 0.00 0.04 5.46 84.65 0.46 0.51 16 24 N -0.93 -59.19 13.29 21.45 0.28 -58.90 16 25 Si 0.97 46.05 29.54 68.60 2.03 48.08 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 28 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 0.62 6.42 -2.38 -0.02 0.61 16 31 H 0.05 0.58 6.55 -2.39 -0.02 0.57 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.65 6.54 -2.39 -0.02 0.63 16 34 H 0.06 1.07 7.51 -2.39 -0.02 1.05 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 0.65 6.86 -2.39 -0.02 0.64 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.11 1.17 6.88 -2.39 -0.02 1.15 16 39 H 0.04 0.71 6.93 -2.39 -0.02 0.69 16 40 H 0.06 1.65 6.20 -2.39 -0.01 1.63 16 41 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.04 1.62 7.38 -2.39 -0.02 1.61 16 43 H 0.06 2.23 7.42 -2.38 -0.02 2.21 16 44 H 0.05 1.24 6.59 -2.38 -0.02 1.22 16 45 H 0.12 1.45 6.24 -2.39 -0.01 1.43 16 46 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.05 2.67 7.14 -2.39 -0.02 2.65 16 49 H 0.08 3.34 7.92 -2.38 -0.02 3.33 16 50 H 0.01 0.57 6.14 -2.39 -0.01 0.55 16 51 H -0.03 -2.13 8.14 -2.39 -0.02 -2.15 16 52 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -78.22 384.10 2.09 -76.13 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.89 Total: 15.54 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 5.73 Total: -5.14 kcal Atomic # 7 Polarization: -90.64 SS G_CDS: -5.33 Total: -95.97 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.22 Total: -38.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -78.22 2.09 -76.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273809749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.332 kcal (2) G-P(sol) polarization free energy of solvation -78.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds