Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99940 * 2 1 4 4 C 1.53005 * 109.47136 * 60.00497 * 3 2 1 5 5 C 1.52994 * 109.47391 * 299.99858 * 3 2 1 6 6 C 1.52999 * 109.46818 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47294 * 65.00148 * 6 3 2 8 8 C 1.46921 * 124.34627 * 269.97668 * 7 6 3 9 9 C 1.53823 * 105.34136 * 196.41118 * 8 7 6 10 10 C 1.53981 * 102.47013 * 335.29628 * 9 8 7 11 11 C 1.34503 * 124.35059 * 89.97202 * 7 6 3 12 12 O 1.21281 * 124.94165 * 359.59785 * 11 7 6 13 13 C 1.52237 * 110.62808 * 93.11535 * 9 8 7 14 14 C 1.53284 * 109.37350 * 180.99498 * 13 9 8 15 15 C 1.53129 * 109.05198 * 303.56187 * 14 13 9 16 16 C 1.53036 * 109.39476 * 58.24148 * 15 14 13 17 17 N 1.45966 * 110.79611 * 217.21421 * 9 8 7 18 18 C 1.46897 * 111.00340 * 52.44286 * 17 9 8 19 19 C 1.50694 * 109.47188 * 179.52635 * 18 17 9 20 20 H 1.07995 * 120.00173 * 5.22439 * 19 18 17 21 21 C 1.37884 * 120.00241 * 185.22737 * 19 18 17 22 22 N 1.31512 * 119.99715 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47322 * 60.00252 * 23 21 19 25 25 H 1.48501 * 109.46886 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47311 * 299.99527 * 23 21 19 27 27 H 1.08996 * 109.47127 * 59.99464 * 1 2 3 28 28 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46865 * 300.00056 * 1 2 3 30 30 H 1.08998 * 109.46899 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46603 * 299.99147 * 4 3 2 32 32 H 1.08990 * 109.47428 * 59.99557 * 4 3 2 33 33 H 1.09005 * 109.47101 * 300.00523 * 5 3 2 34 34 H 1.08999 * 109.46958 * 59.99957 * 5 3 2 35 35 H 1.08998 * 109.47035 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47501 * 305.00294 * 6 3 2 37 37 H 1.09004 * 109.47442 * 184.99968 * 6 3 2 38 38 H 1.09001 * 110.27339 * 77.45112 * 8 7 6 39 39 H 1.09000 * 110.27038 * 315.37679 * 8 7 6 40 40 H 1.09001 * 110.51409 * 142.77144 * 10 9 8 41 41 H 1.09000 * 110.51116 * 265.34031 * 10 9 8 42 42 H 1.09007 * 109.48962 * 300.96030 * 13 9 8 43 43 H 1.08998 * 109.48840 * 61.00303 * 13 9 8 44 44 H 1.09008 * 109.55949 * 183.68696 * 14 13 9 45 45 H 1.08999 * 109.53871 * 63.42637 * 14 13 9 46 46 H 1.09000 * 109.48252 * 298.26691 * 15 14 13 47 47 H 1.08990 * 109.48788 * 178.23073 * 15 14 13 48 48 H 1.08994 * 109.47145 * 60.23232 * 16 15 14 49 49 H 1.09007 * 109.46573 * 180.22272 * 16 15 14 50 50 H 1.08998 * 109.47131 * 299.52698 * 18 17 9 51 51 H 1.08997 * 109.47073 * 59.52701 * 18 17 9 52 52 H 0.96997 * 120.00464 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5589 2.0647 1.2493 5 6 1.5589 2.0648 -1.2492 6 6 3.5355 1.1846 0.0006 7 7 3.9767 0.5639 -1.2509 8 6 4.1398 -0.8831 -1.4461 9 6 4.9947 -1.0286 -2.7166 10 6 4.7086 0.2879 -3.4623 11 6 4.2845 1.2455 -2.3688 12 8 4.2296 2.4516 -2.4843 13 6 6.4714 -1.1301 -2.3607 14 6 7.2973 -1.2488 -3.6465 15 6 6.8008 -2.4542 -4.4500 16 6 5.3133 -2.2782 -4.7634 17 7 4.5566 -2.1745 -3.5075 18 6 3.1120 -2.1141 -3.7667 19 6 2.6997 -3.3046 -4.5936 20 1 3.4188 -4.0763 -4.8251 21 6 1.4045 -3.4086 -5.0546 22 7 0.5286 -2.4690 -4.7724 23 14 0.8933 -4.8846 -6.0790 24 1 1.0945 -6.1273 -5.2914 25 1 -0.5398 -4.7591 -6.4472 26 1 1.7186 -4.9410 -7.3122 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.0018 3.0606 1.2491 31 1 0.4723 2.1509 1.2493 32 1 1.8804 1.5238 2.1392 33 1 1.8805 1.5238 -2.1392 34 1 0.4723 2.1508 -1.2492 35 1 2.0026 3.0603 -1.2494 36 1 3.8508 0.5684 0.8426 37 1 3.9786 2.1765 0.0902 38 1 3.1685 -1.3569 -1.5883 39 1 4.6544 -1.3237 -0.5922 40 1 5.6094 0.6493 -3.9585 41 1 3.9047 0.1503 -4.1854 42 1 6.7759 -0.2375 -1.8141 43 1 6.6361 -2.0106 -1.7397 44 1 8.3485 -1.3874 -3.3935 45 1 7.1804 -0.3420 -4.2399 46 1 6.9444 -3.3638 -3.8669 47 1 7.3625 -2.5268 -5.3811 48 1 5.1704 -1.3705 -5.3496 49 1 4.9577 -3.1375 -5.3320 50 1 2.5722 -2.1250 -2.8198 51 1 2.8780 -1.1974 -4.3078 52 1 -0.3827 -2.5422 -5.0964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -67.588077 kcal Electronic energy + Delta-G solvation = -30952.684213 eV Core-core repulsion = 27145.473308 eV Total energy + Delta-G solvation = -3807.210906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92563 -38.92380 -37.82239 -35.38823 -33.76634 -33.34340 -31.91056 -30.98899 -28.44151 -27.35356 -27.16901 -26.91589 -26.16834 -24.60614 -23.94475 -21.56118 -20.88740 -20.08643 -19.04052 -18.22999 -16.80763 -16.60314 -15.95483 -15.85825 -15.33740 -15.06701 -14.81366 -14.62307 -14.28265 -14.00470 -13.84748 -13.77857 -13.54691 -13.17075 -12.92853 -12.54906 -12.37390 -12.33336 -12.30129 -11.96394 -11.86422 -11.80288 -11.69832 -11.64072 -11.32445 -11.15426 -11.06153 -10.85796 -10.75244 -10.65558 -10.49282 -10.22832 -10.14246 -9.96605 -9.60372 -9.43905 -9.33047 -9.12453 -8.48989 -8.20906 -7.23818 -6.05442 -4.06827 2.97292 3.30553 3.31436 3.35968 3.38279 3.91714 4.37184 4.56631 4.80828 4.84477 4.96367 5.02356 5.07082 5.17764 5.23550 5.29919 5.37737 5.40467 5.45918 5.55214 5.56707 5.59221 5.62993 5.66544 5.74416 5.87138 5.89896 5.94652 5.97437 6.00766 6.08213 6.13401 6.13520 6.14391 6.25784 6.28724 6.38704 6.46232 6.49953 6.54165 6.76287 6.79555 6.86283 7.29101 7.37245 7.40550 7.50778 7.76047 8.04993 8.15024 8.51650 8.55624 9.00067 9.57059 11.04819 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.005738 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.341429 B = 4878.983551 C = 6943.482478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.093 3.907 4 C -0.175 4.175 5 C -0.170 4.170 6 C 0.144 3.856 7 N -0.607 5.607 8 C 0.109 3.891 9 C 0.109 3.891 10 C -0.191 4.191 11 C 0.525 3.475 12 O -0.548 6.548 13 C -0.098 4.098 14 C -0.120 4.120 15 C -0.119 4.119 16 C 0.065 3.935 17 N -0.519 5.519 18 C 0.187 3.813 19 C -0.513 4.513 20 H 0.064 0.936 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.044 0.956 28 H 0.085 0.915 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.023 0.977 49 H 0.090 0.910 50 H 0.039 0.961 51 H -0.001 1.001 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.799 5.862 9.729 13.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C 0.052 3.948 4 C -0.233 4.233 5 C -0.227 4.227 6 C 0.021 3.979 7 N -0.340 5.340 8 C -0.013 4.013 9 C 0.017 3.983 10 C -0.233 4.233 11 C 0.314 3.686 12 O -0.426 6.426 13 C -0.136 4.136 14 C -0.157 4.157 15 C -0.156 4.156 16 C -0.063 4.063 17 N -0.242 5.242 18 C 0.062 3.938 19 C -0.552 4.552 20 H 0.082 0.918 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.042 0.958 49 H 0.108 0.892 50 H 0.057 0.943 51 H 0.016 0.984 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.759 5.957 9.980 13.445 hybrid contribution -1.004 0.189 -1.050 1.465 sum 5.755 6.146 8.930 12.274 Atomic orbital electron populations 1.22742 0.81549 1.02802 0.99566 1.88011 1.19486 1.26329 1.94915 1.21985 0.94068 0.84162 0.94570 1.22354 1.02143 1.00788 0.98004 1.22343 1.00961 1.00952 0.98474 1.21319 0.91260 0.99157 0.86117 1.48185 1.65941 1.08181 1.11650 1.22383 1.02294 0.79549 0.97084 1.21273 0.94586 0.88945 0.93504 1.23153 1.04312 0.96984 0.98829 1.20908 0.75600 0.87951 0.84132 1.90645 1.55332 1.13998 1.82643 1.21428 0.92868 1.01637 0.97636 1.21627 0.98560 0.98846 0.96677 1.21649 0.96530 0.98194 0.99275 1.21983 0.91548 1.01362 0.91431 1.61845 1.07804 1.36363 1.18226 1.19900 0.80695 0.96501 0.96667 1.21113 0.95595 1.06246 1.32198 0.91791 1.24958 0.96601 0.96318 0.96417 1.69950 1.04134 1.33308 1.45791 0.86607 0.77368 0.83118 0.80591 1.20174 1.21447 1.20312 0.93714 0.89615 0.94529 0.91501 0.91899 0.91733 0.91466 0.92691 0.91436 0.89828 0.89042 0.88039 0.90886 0.88784 0.86870 0.92348 0.90847 0.92391 0.92406 0.91442 0.92440 0.95830 0.89216 0.94346 0.98372 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.21 101.05 1.03 1.45 16 2 O -0.37 -5.86 10.17 -35.23 -0.36 -6.22 16 3 C 0.09 1.29 0.91 -90.62 -0.08 1.21 16 4 C -0.17 -1.86 8.25 37.16 0.31 -1.56 16 5 C -0.17 -2.67 7.06 37.15 0.26 -2.41 16 6 C 0.14 1.96 5.17 -4.04 -0.02 1.94 16 7 N -0.61 -9.74 2.54 -172.61 -0.44 -10.18 16 8 C 0.11 1.82 6.26 -3.38 -0.02 1.80 16 9 C 0.11 1.82 0.61 -131.56 -0.08 1.74 16 10 C -0.19 -3.38 4.56 -27.02 -0.12 -3.50 16 11 C 0.53 9.52 6.31 -10.75 -0.07 9.45 16 12 O -0.55 -11.10 16.49 5.56 0.09 -11.01 16 13 C -0.10 -1.36 4.76 -26.97 -0.13 -1.49 16 14 C -0.12 -1.56 5.80 -26.52 -0.15 -1.72 16 15 C -0.12 -1.71 6.07 -26.65 -0.16 -1.87 16 16 C 0.06 1.18 4.98 -3.76 -0.02 1.16 16 17 N -0.52 -10.17 4.58 -220.36 -1.01 -11.18 16 18 C 0.19 4.50 4.16 -4.98 -0.02 4.48 16 19 C -0.51 -13.56 8.29 -34.44 -0.29 -13.85 16 20 H 0.06 1.66 6.57 -52.49 -0.34 1.32 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 23 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.04 0.66 6.42 -51.93 -0.33 0.32 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.42 6.42 -51.92 -0.33 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.29 6.26 -51.93 -0.33 0.97 16 34 H 0.05 0.80 6.54 -51.93 -0.34 0.46 16 35 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 1.18 7.93 -51.93 -0.41 0.77 16 38 H 0.10 2.02 5.29 -51.93 -0.27 1.75 16 39 H 0.07 1.07 7.88 -51.93 -0.41 0.66 16 40 H 0.09 1.54 6.21 -51.93 -0.32 1.22 16 41 H 0.11 2.32 5.66 -51.93 -0.29 2.03 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 45 H 0.06 0.77 6.54 -51.93 -0.34 0.43 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 48 H 0.02 0.44 7.18 -51.93 -0.37 0.07 16 49 H 0.09 1.80 6.13 -51.93 -0.32 1.48 16 50 H 0.04 1.01 5.72 -51.93 -0.30 0.71 16 51 H 0.00 -0.04 6.00 -51.93 -0.31 -0.35 16 52 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -29.70 379.55 -8.66 -38.35 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.72 Total: 5.02 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 0.34 Total: -1.66 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.71 Total: -46.18 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.27 Total: -17.23 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.70 -8.66 -38.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.236 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds