Wall clock time and date at job start Tue Mar 31 2020 13:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99940 * 2 1 4 4 C 1.53005 * 109.47136 * 60.00497 * 3 2 1 5 5 C 1.52994 * 109.47391 * 299.99858 * 3 2 1 6 6 C 1.52999 * 109.46818 * 179.97438 * 3 2 1 7 7 N 1.46502 * 109.47294 * 65.00148 * 6 3 2 8 8 C 1.46921 * 124.34627 * 269.97668 * 7 6 3 9 9 C 1.53823 * 105.34136 * 196.41118 * 8 7 6 10 10 C 1.53981 * 102.47013 * 335.29628 * 9 8 7 11 11 C 1.34503 * 124.35059 * 89.97202 * 7 6 3 12 12 O 1.21281 * 124.94165 * 359.59785 * 11 7 6 13 13 C 1.52237 * 110.62808 * 93.11535 * 9 8 7 14 14 C 1.53284 * 109.37350 * 180.99498 * 13 9 8 15 15 C 1.53129 * 109.05198 * 303.56187 * 14 13 9 16 16 C 1.53036 * 109.39476 * 58.24148 * 15 14 13 17 17 N 1.45966 * 110.79611 * 217.21421 * 9 8 7 18 18 C 1.46897 * 111.00340 * 52.44286 * 17 9 8 19 19 C 1.50694 * 109.47188 * 179.52635 * 18 17 9 20 20 H 1.07995 * 120.00173 * 5.22439 * 19 18 17 21 21 C 1.37884 * 120.00241 * 185.22737 * 19 18 17 22 22 N 1.31512 * 119.99715 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47322 * 60.00252 * 23 21 19 25 25 H 1.48501 * 109.46886 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47311 * 299.99527 * 23 21 19 27 27 H 1.08996 * 109.47127 * 59.99464 * 1 2 3 28 28 H 1.08995 * 109.47299 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46865 * 300.00056 * 1 2 3 30 30 H 1.08998 * 109.46899 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46603 * 299.99147 * 4 3 2 32 32 H 1.08990 * 109.47428 * 59.99557 * 4 3 2 33 33 H 1.09005 * 109.47101 * 300.00523 * 5 3 2 34 34 H 1.08999 * 109.46958 * 59.99957 * 5 3 2 35 35 H 1.08998 * 109.47035 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.47501 * 305.00294 * 6 3 2 37 37 H 1.09004 * 109.47442 * 184.99968 * 6 3 2 38 38 H 1.09001 * 110.27339 * 77.45112 * 8 7 6 39 39 H 1.09000 * 110.27038 * 315.37679 * 8 7 6 40 40 H 1.09001 * 110.51409 * 142.77144 * 10 9 8 41 41 H 1.09000 * 110.51116 * 265.34031 * 10 9 8 42 42 H 1.09007 * 109.48962 * 300.96030 * 13 9 8 43 43 H 1.08998 * 109.48840 * 61.00303 * 13 9 8 44 44 H 1.09008 * 109.55949 * 183.68696 * 14 13 9 45 45 H 1.08999 * 109.53871 * 63.42637 * 14 13 9 46 46 H 1.09000 * 109.48252 * 298.26691 * 15 14 13 47 47 H 1.08990 * 109.48788 * 178.23073 * 15 14 13 48 48 H 1.08994 * 109.47145 * 60.23232 * 16 15 14 49 49 H 1.09007 * 109.46573 * 180.22272 * 16 15 14 50 50 H 1.08998 * 109.47131 * 299.52698 * 18 17 9 51 51 H 1.08997 * 109.47073 * 59.52701 * 18 17 9 52 52 H 0.96997 * 120.00464 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5589 2.0647 1.2493 5 6 1.5589 2.0648 -1.2492 6 6 3.5355 1.1846 0.0006 7 7 3.9767 0.5639 -1.2509 8 6 4.1398 -0.8831 -1.4461 9 6 4.9947 -1.0286 -2.7166 10 6 4.7086 0.2879 -3.4623 11 6 4.2845 1.2455 -2.3688 12 8 4.2296 2.4516 -2.4843 13 6 6.4714 -1.1301 -2.3607 14 6 7.2973 -1.2488 -3.6465 15 6 6.8008 -2.4542 -4.4500 16 6 5.3133 -2.2782 -4.7634 17 7 4.5566 -2.1745 -3.5075 18 6 3.1120 -2.1141 -3.7667 19 6 2.6997 -3.3046 -4.5936 20 1 3.4188 -4.0763 -4.8251 21 6 1.4045 -3.4086 -5.0546 22 7 0.5286 -2.4690 -4.7724 23 14 0.8933 -4.8846 -6.0790 24 1 1.0945 -6.1273 -5.2914 25 1 -0.5398 -4.7591 -6.4472 26 1 1.7186 -4.9410 -7.3122 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 2.0018 3.0606 1.2491 31 1 0.4723 2.1509 1.2493 32 1 1.8804 1.5238 2.1392 33 1 1.8805 1.5238 -2.1392 34 1 0.4723 2.1508 -1.2492 35 1 2.0026 3.0603 -1.2494 36 1 3.8508 0.5684 0.8426 37 1 3.9786 2.1765 0.0902 38 1 3.1685 -1.3569 -1.5883 39 1 4.6544 -1.3237 -0.5922 40 1 5.6094 0.6493 -3.9585 41 1 3.9047 0.1503 -4.1854 42 1 6.7759 -0.2375 -1.8141 43 1 6.6361 -2.0106 -1.7397 44 1 8.3485 -1.3874 -3.3935 45 1 7.1804 -0.3420 -4.2399 46 1 6.9444 -3.3638 -3.8669 47 1 7.3625 -2.5268 -5.3811 48 1 5.1704 -1.3705 -5.3496 49 1 4.9577 -3.1375 -5.3320 50 1 2.5722 -2.1250 -2.8198 51 1 2.8780 -1.1974 -4.3078 52 1 -0.3827 -2.5422 -5.0964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032455.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:05 Heat of formation + Delta-G solvation = -86.984975 kcal Electronic energy + Delta-G solvation = -30953.525326 eV Core-core repulsion = 27145.473308 eV Total energy + Delta-G solvation = -3808.052018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32668 -40.16469 -39.22118 -36.79517 -35.50466 -34.55816 -33.67536 -32.27380 -29.81965 -28.80666 -28.54267 -28.27553 -27.44171 -25.91958 -25.54628 -23.19700 -22.24818 -21.28908 -20.39423 -19.56780 -18.63438 -17.96441 -17.48331 -17.06943 -16.93633 -16.36086 -16.15441 -16.03339 -15.83618 -15.54256 -15.29771 -15.05816 -14.91092 -14.34632 -14.22780 -14.07652 -13.93499 -13.65802 -13.44361 -13.35538 -13.23424 -13.07231 -12.98502 -12.91424 -12.73955 -12.68348 -12.55847 -12.35369 -12.28369 -12.05662 -11.96790 -11.66881 -11.50953 -11.44050 -11.04832 -10.90519 -10.88392 -10.55961 -10.53074 -9.60488 -8.92846 -8.17109 -6.25697 1.41667 1.43813 1.50243 1.51255 2.01373 2.41168 2.79541 3.06949 3.16397 3.47053 3.68681 3.74626 3.80954 3.87010 3.93248 3.98607 4.15940 4.30768 4.32413 4.37158 4.43961 4.45302 4.51312 4.55112 4.57502 4.60142 4.65718 4.69179 4.76974 4.82414 4.84195 4.86951 4.97767 5.03072 5.05828 5.08729 5.12159 5.16793 5.25030 5.28470 5.33006 5.38451 5.50260 5.57173 5.62121 5.68932 6.04373 6.10892 6.30026 6.35669 6.71987 6.91672 7.12795 7.43137 8.93176 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009940 B = 0.005738 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.341429 B = 4878.983551 C = 6943.482478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.392 6.392 3 C 0.090 3.910 4 C -0.166 4.166 5 C -0.163 4.163 6 C 0.136 3.864 7 N -0.598 5.598 8 C 0.114 3.886 9 C 0.109 3.891 10 C -0.187 4.187 11 C 0.523 3.477 12 O -0.573 6.573 13 C -0.092 4.092 14 C -0.116 4.116 15 C -0.109 4.109 16 C 0.063 3.937 17 N -0.517 5.517 18 C 0.208 3.792 19 C -0.523 4.523 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.930 5.930 23 Si 0.962 3.038 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.269 1.269 27 H 0.027 0.973 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.010 0.990 49 H 0.066 0.934 50 H 0.014 0.986 51 H -0.037 1.037 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.970 5.365 11.447 15.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.312 6.312 3 C 0.050 3.950 4 C -0.224 4.224 5 C -0.220 4.220 6 C 0.015 3.985 7 N -0.329 5.329 8 C -0.009 4.009 9 C 0.018 3.982 10 C -0.228 4.228 11 C 0.311 3.689 12 O -0.453 6.453 13 C -0.129 4.129 14 C -0.153 4.153 15 C -0.147 4.147 16 C -0.065 4.065 17 N -0.240 5.240 18 C 0.082 3.918 19 C -0.562 4.562 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.570 5.570 23 Si 0.787 3.213 24 H -0.192 1.192 25 H -0.214 1.214 26 H -0.194 1.194 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.028 0.972 49 H 0.084 0.916 50 H 0.032 0.968 51 H -0.019 1.019 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.950 5.444 11.720 15.719 hybrid contribution -1.717 0.375 -1.592 2.371 sum 7.233 5.819 10.128 13.739 Atomic orbital electron populations 1.22788 0.80903 1.02792 1.00251 1.87976 1.20405 1.27718 1.95071 1.22122 0.94242 0.83580 0.95104 1.22282 1.02553 1.01141 0.96409 1.22276 1.01252 1.00630 0.97863 1.21664 0.91124 1.00211 0.85526 1.48201 1.64903 1.07736 1.12068 1.22269 1.00610 0.79757 0.98233 1.21460 0.96976 0.87109 0.92676 1.23058 1.03501 0.97916 0.98344 1.20901 0.75647 0.87610 0.84693 1.90617 1.56712 1.14905 1.83096 1.21437 0.89903 1.03017 0.98570 1.21636 1.00112 0.97861 0.95737 1.21588 0.93131 0.99183 1.00757 1.22016 0.94354 0.99651 0.90474 1.61781 1.05236 1.37936 1.19079 1.19449 0.83680 0.94210 0.94472 1.21480 0.95798 1.06792 1.32090 0.91495 1.25830 0.96708 0.99100 0.97673 1.70103 1.04383 1.35365 1.47184 0.85547 0.76853 0.79715 0.79180 1.19207 1.21414 1.19353 0.95402 0.90104 0.91342 0.90025 0.91416 0.90041 0.95961 0.92211 0.91265 0.87096 0.87830 0.91878 0.87950 0.87367 0.90702 0.90688 0.89595 0.89101 0.92687 0.90980 0.90379 0.97169 0.91569 0.96816 1.01927 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.21 113.37 1.16 1.97 16 2 O -0.39 -12.58 10.17 -148.98 -1.51 -14.10 16 3 C 0.09 2.43 0.91 -10.79 -0.01 2.42 16 4 C -0.17 -3.12 8.25 71.98 0.59 -2.53 16 5 C -0.16 -5.30 7.06 71.98 0.51 -4.80 16 6 C 0.14 3.50 5.17 86.38 0.45 3.95 16 7 N -0.60 -19.17 2.54 -818.56 -2.08 -21.24 16 8 C 0.11 3.80 6.26 86.58 0.54 4.35 16 9 C 0.11 3.65 0.61 4.06 0.00 3.66 16 10 C -0.19 -6.85 4.56 30.41 0.14 -6.71 16 11 C 0.52 19.39 6.31 87.93 0.56 19.95 16 12 O -0.57 -23.70 16.49 -3.03 -0.05 -23.75 16 13 C -0.09 -2.28 4.76 30.44 0.14 -2.14 16 14 C -0.12 -2.65 5.80 30.73 0.18 -2.47 16 15 C -0.11 -2.88 6.07 30.65 0.19 -2.70 16 16 C 0.06 2.32 4.98 86.30 0.43 2.75 16 17 N -0.52 -20.81 4.58 -851.09 -3.89 -24.70 16 18 C 0.21 10.67 4.16 85.56 0.36 11.02 16 19 C -0.52 -28.77 8.29 25.60 0.21 -28.56 16 20 H 0.07 3.57 6.57 -2.91 -0.02 3.55 16 21 C 0.01 0.29 5.46 84.66 0.46 0.76 16 22 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 23 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 24 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 H 0.03 0.86 6.42 -2.39 -0.02 0.84 16 28 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.07 1.47 6.42 -2.38 -0.02 1.45 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.22 6.54 -2.39 -0.02 1.20 16 32 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.02 0.90 6.26 -2.38 -0.01 0.88 16 34 H 0.06 1.82 6.54 -2.39 -0.02 1.81 16 35 H 0.07 2.18 7.90 -2.39 -0.02 2.16 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.45 7.93 -2.39 -0.02 2.43 16 38 H 0.06 2.66 5.29 -2.39 -0.01 2.64 16 39 H 0.10 2.81 7.88 -2.39 -0.02 2.79 16 40 H 0.11 3.57 6.21 -2.39 -0.01 3.56 16 41 H 0.07 3.37 5.66 -2.39 -0.01 3.35 16 42 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.05 1.31 6.54 -2.39 -0.02 1.29 16 46 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.01 0.39 7.18 -2.39 -0.02 0.38 16 49 H 0.07 2.72 6.13 -2.38 -0.01 2.71 16 50 H 0.01 0.79 5.72 -2.39 -0.01 0.77 16 51 H -0.04 -2.13 6.00 -2.39 -0.01 -2.14 16 52 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -68.83 379.55 1.58 -67.25 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.91 Total: 25.25 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 5.90 Total: 0.91 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.69 Total: -101.52 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.56 Total: -37.85 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -68.83 1.58 -67.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032455.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.734 kcal (2) G-P(sol) polarization free energy of solvation -68.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds