Wall clock time and date at job start Tue Mar 31 2020 13:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99794 * 2 1 4 4 C 1.52992 * 109.47288 * 60.00103 * 3 2 1 5 5 C 1.52999 * 109.46897 * 299.99572 * 3 2 1 6 6 C 1.53007 * 109.47000 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47047 * 64.99945 * 6 3 2 8 8 C 1.34777 * 119.99852 * 180.02562 * 7 6 3 9 9 O 1.21288 * 120.00179 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00224 * 179.97438 * 8 7 6 11 11 H 1.09005 * 115.56827 * 325.72094 * 10 8 7 12 12 C 1.53058 * 117.50479 * 111.43827 * 10 8 7 13 13 C 1.52730 * 117.50768 * 179.97438 * 10 8 7 14 14 C 1.53218 * 117.84488 * 144.78398 * 13 10 8 15 15 C 1.53260 * 108.62110 * 162.99665 * 14 13 10 16 16 N 1.46803 * 109.45022 * 55.59618 * 15 14 13 17 17 C 1.46906 * 111.00388 * 170.80287 * 16 15 14 18 18 C 1.50703 * 109.46573 * 65.03661 * 17 16 15 19 19 H 1.08007 * 120.00181 * 354.97203 * 18 17 16 20 20 C 1.37878 * 119.99861 * 174.96443 * 18 17 16 21 21 N 1.31515 * 119.99803 * 0.28037 * 20 18 17 22 22 Si 1.86795 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47422 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46880 * 120.00709 * 22 20 18 25 25 H 1.48504 * 109.47488 * 240.00302 * 22 20 18 26 26 C 1.46808 * 111.56935 * 295.17488 * 16 15 14 27 27 C 1.53215 * 117.84929 * 0.27793 * 13 10 8 28 28 H 1.08998 * 109.47232 * 299.99777 * 1 2 3 29 29 H 1.09001 * 109.47216 * 60.00605 * 1 2 3 30 30 H 1.09009 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46996 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47214 * 299.99834 * 4 3 2 33 33 H 1.08992 * 109.47584 * 59.99641 * 4 3 2 34 34 H 1.08997 * 109.47465 * 300.00464 * 5 3 2 35 35 H 1.09007 * 109.46890 * 60.00603 * 5 3 2 36 36 H 1.08997 * 109.47226 * 180.02562 * 5 3 2 37 37 H 1.08996 * 109.47004 * 304.99859 * 6 3 2 38 38 H 1.08998 * 109.46978 * 184.99820 * 6 3 2 39 39 H 0.96999 * 120.00226 * 359.97438 * 7 6 3 40 40 H 1.08991 * 117.50708 * 0.02562 * 12 10 8 41 41 H 1.09000 * 117.53414 * 214.93066 * 12 10 8 42 42 H 1.08991 * 109.61305 * 43.25145 * 14 13 10 43 43 H 1.09001 * 109.61336 * 282.73181 * 14 13 10 44 44 H 1.09006 * 109.47614 * 295.60428 * 15 14 13 45 45 H 1.09002 * 109.48379 * 175.59701 * 15 14 13 46 46 H 1.08994 * 109.46920 * 305.04324 * 17 16 15 47 47 H 1.08998 * 109.47048 * 185.03647 * 17 16 15 48 48 H 0.97000 * 120.00246 * 359.72546 * 21 20 18 49 49 H 1.09005 * 109.47262 * 184.81594 * 26 16 15 50 50 H 1.08997 * 109.48027 * 304.83563 * 26 16 15 51 51 H 1.09005 * 109.60856 * 316.74912 * 27 13 10 52 52 H 1.08998 * 109.61014 * 77.08973 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1847 -0.0006 7 7 3.9756 0.5645 -1.2527 8 6 5.2882 0.3557 -1.4763 9 8 6.1050 0.6817 -0.6410 10 6 5.7411 -0.2828 -2.7639 11 1 5.0700 -1.0359 -3.1771 12 6 6.5160 0.5919 -3.7524 13 6 7.2415 -0.4921 -2.9580 14 6 7.6976 -1.7457 -3.7117 15 6 9.1504 -1.5471 -4.1576 16 7 9.9816 -1.2319 -2.9894 17 6 11.4085 -1.2491 -3.3383 18 6 11.6987 -0.1434 -4.3204 19 1 10.8904 0.4549 -4.7144 20 6 12.9961 0.1044 -4.7159 21 7 13.9797 -0.6277 -4.2402 22 14 13.3558 1.4743 -5.9337 23 1 12.0856 2.1400 -6.3193 24 1 14.2645 2.4677 -5.3070 25 1 14.0034 0.9047 -7.1426 26 6 9.6025 0.0526 -2.3880 27 6 8.1781 -0.0456 -1.8308 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 2.0017 3.0606 1.2489 32 1 0.4721 2.1508 1.2492 33 1 1.8803 1.5239 2.1391 34 1 1.8803 1.5237 -2.1392 35 1 0.4720 2.1507 -1.2493 36 1 2.0023 3.0603 -1.2496 37 1 3.8514 0.5683 0.8409 38 1 3.9784 2.1766 0.0889 39 1 3.3224 0.3034 -1.9205 40 1 6.6986 1.6289 -3.4710 41 1 6.3553 0.4144 -4.8157 42 1 7.0642 -1.8980 -4.5855 43 1 7.6322 -2.6122 -3.0537 44 1 9.2021 -0.7259 -4.8726 45 1 9.5148 -2.4609 -4.6270 46 1 11.6611 -2.2095 -3.7874 47 1 12.0045 -1.1009 -2.4378 48 1 13.7929 -1.3394 -3.6082 49 1 10.2931 0.2934 -1.5798 50 1 9.6430 0.8349 -3.1460 51 1 7.8631 0.9291 -1.4579 52 1 8.1488 -0.7741 -1.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:24 Heat of formation + Delta-G solvation = -62.162494 kcal Electronic energy + Delta-G solvation = -28446.507269 eV Core-core repulsion = 24639.531635 eV Total energy + Delta-G solvation = -3806.975635 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51081 -39.56083 -38.10500 -35.83403 -35.01110 -32.83478 -32.59619 -30.29002 -29.62789 -28.13374 -27.86138 -26.45030 -25.29764 -23.46536 -22.98593 -22.56808 -20.86396 -20.61485 -19.96342 -18.32342 -17.34798 -16.91884 -16.62416 -16.26115 -15.64298 -15.27939 -15.18290 -14.79074 -14.36813 -14.24254 -14.18657 -13.70470 -13.68053 -13.54202 -13.19215 -12.97199 -12.81705 -12.61537 -12.50766 -12.47696 -12.05018 -12.00367 -11.83737 -11.66267 -11.63295 -11.37352 -11.05429 -10.88787 -10.57467 -10.51711 -10.29321 -10.13710 -10.11095 -10.01980 -9.57055 -9.54196 -9.19915 -9.14859 -8.99971 -8.31911 -6.99662 -6.32119 -4.05661 2.54993 3.01020 3.23016 3.43596 3.47375 3.60318 3.94595 4.15900 4.34080 4.41540 4.54956 4.68568 4.82681 4.85475 4.86844 4.89388 5.01352 5.04818 5.14296 5.19641 5.21293 5.22134 5.30234 5.36460 5.38353 5.41388 5.52342 5.56724 5.68840 5.73184 5.83210 5.90827 6.02793 6.14359 6.19814 6.28280 6.32592 6.48758 6.57867 6.66772 6.70993 6.81591 6.86500 7.06401 7.19011 7.31759 7.41754 7.98839 8.22239 8.25652 8.32729 8.59526 8.86462 9.67760 11.04564 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.002252 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.176271 B =12429.231206 C =12600.594350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.376 6.376 3 C 0.099 3.901 4 C -0.177 4.177 5 C -0.180 4.180 6 C 0.137 3.863 7 N -0.726 5.726 8 C 0.544 3.456 9 O -0.528 6.528 10 C -0.197 4.197 11 H 0.118 0.882 12 C -0.147 4.147 13 C -0.068 4.068 14 C -0.080 4.080 15 C 0.070 3.930 16 N -0.539 5.539 17 C 0.175 3.825 18 C -0.624 4.624 19 H 0.051 0.949 20 C 0.019 3.981 21 N -0.912 5.912 22 Si 1.070 2.930 23 H -0.291 1.291 24 H -0.287 1.287 25 H -0.287 1.287 26 C 0.068 3.932 27 C -0.074 4.074 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.022 0.978 48 H 0.270 0.730 49 H 0.062 0.938 50 H 0.036 0.964 51 H 0.082 0.918 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.360 3.995 6.142 31.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.295 6.295 3 C 0.059 3.941 4 C -0.235 4.235 5 C -0.237 4.237 6 C 0.013 3.987 7 N -0.380 5.380 8 C 0.332 3.668 9 O -0.404 6.404 10 C -0.219 4.219 11 H 0.136 0.864 12 C -0.184 4.184 13 C -0.069 4.069 14 C -0.118 4.118 15 C -0.059 4.059 16 N -0.262 5.262 17 C 0.049 3.951 18 C -0.663 4.663 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.899 3.101 23 H -0.217 1.217 24 H -0.213 1.213 25 H -0.214 1.214 26 C -0.060 4.060 27 C -0.111 4.111 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.236 0.764 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.054 0.946 51 H 0.100 0.900 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -28.512 4.461 6.295 29.537 hybrid contribution -1.839 -0.041 -0.171 1.847 sum -30.350 4.419 6.125 31.276 Atomic orbital electron populations 1.22816 0.81344 1.02834 1.00223 1.88029 1.19650 1.26762 1.95030 1.21765 0.93103 0.83966 0.95248 1.22352 1.02134 1.01174 0.97823 1.22433 1.02036 1.01321 0.97952 1.21286 0.90455 0.99206 0.87786 1.45929 1.07712 1.63921 1.20410 1.19803 0.81667 0.77752 0.87610 1.90701 1.52108 1.51026 1.46607 1.22295 0.98045 1.04860 0.96652 0.86419 1.23040 1.02073 0.96878 0.96442 1.21571 0.88979 0.97181 0.99142 1.21322 0.96904 0.95339 0.98227 1.21787 0.90990 1.00297 0.92782 1.62197 1.05715 1.30506 1.27822 1.19837 0.83635 0.96262 0.95411 1.22617 0.95484 1.19212 1.29035 0.93053 1.25759 0.92577 1.00894 0.99326 1.70720 1.34104 1.20085 1.29901 0.83528 0.75155 0.75456 0.75923 1.21714 1.21346 1.21371 1.21907 0.94506 0.91419 0.98206 1.21448 0.92773 1.02113 0.94796 0.93711 0.93709 0.89603 0.90939 0.91614 0.91200 0.91540 0.91773 0.90940 0.90650 0.90058 0.76382 0.88526 0.88065 0.92289 0.91160 0.94504 0.91822 0.96475 0.95992 0.91944 0.91921 0.94604 0.89985 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.21 101.05 1.03 1.16 16 2 O -0.38 -3.04 10.29 -35.23 -0.36 -3.41 16 3 C 0.10 0.67 0.80 -90.62 -0.07 0.60 16 4 C -0.18 -0.96 8.25 37.15 0.31 -0.66 16 5 C -0.18 -0.99 8.02 37.16 0.30 -0.69 16 6 C 0.14 1.25 4.85 -4.04 -0.02 1.23 16 7 N -0.73 -7.28 5.19 -60.30 -0.31 -7.59 16 8 C 0.54 7.28 7.59 -10.99 -0.08 7.20 16 9 O -0.53 -8.95 13.13 5.55 0.07 -8.88 16 10 C -0.20 -2.48 5.93 -91.88 -0.54 -3.03 16 11 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 12 C -0.15 -1.95 9.62 -26.85 -0.26 -2.21 16 13 C -0.07 -1.07 2.01 -154.57 -0.31 -1.38 16 14 C -0.08 -1.27 5.87 -26.48 -0.16 -1.43 16 15 C 0.07 1.41 5.08 -3.74 -0.02 1.39 16 16 N -0.54 -12.24 4.78 -235.89 -1.13 -13.36 16 17 C 0.17 4.65 4.45 -4.97 -0.02 4.63 16 18 C -0.62 -17.75 7.79 -34.44 -0.27 -18.01 16 19 H 0.05 1.47 5.93 -52.48 -0.31 1.16 16 20 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 21 N -0.91 -28.12 13.65 55.43 0.76 -27.36 16 22 Si 1.07 25.83 29.90 -169.99 -5.08 20.75 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.07 1.47 4.99 -3.74 -0.02 1.45 16 27 C -0.07 -1.36 4.32 -26.49 -0.11 -1.47 16 28 H 0.04 0.20 6.42 -51.93 -0.33 -0.14 16 29 H 0.04 0.19 6.42 -51.93 -0.33 -0.14 16 30 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.29 6.54 -51.93 -0.34 -0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.37 6.57 -51.93 -0.34 0.03 16 35 H 0.06 0.29 6.54 -51.93 -0.34 -0.05 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.23 6.99 -40.82 -0.29 2.95 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.80 6.96 -51.93 -0.36 0.44 16 45 H 0.06 1.28 8.01 -51.93 -0.42 0.87 16 46 H 0.02 0.48 8.03 -51.93 -0.42 0.06 16 47 H 0.02 0.62 7.81 -51.93 -0.41 0.22 16 48 H 0.27 8.31 7.19 -40.82 -0.29 8.02 16 49 H 0.06 1.40 8.08 -51.93 -0.42 0.99 16 50 H 0.04 0.83 6.85 -51.93 -0.36 0.47 16 51 H 0.08 1.53 6.00 -51.93 -0.31 1.22 16 52 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 LS Contribution 395.47 15.07 5.96 5.96 Total: -1.00 -33.21 395.47 -9.57 -42.79 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -9.13 Total: 1.86 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.35 Total: -10.75 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.68 Total: -48.32 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.29 Total: -12.28 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.75 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.21 -9.57 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.375 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds